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{{UBERON
{{UBERON
|id=UBERON:0001758
|alt_id=UBERON:FMA_56665-MA_0002467
|name=periodontium
|namespace=
|def="The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium]
|xref=BTO:0001021;;FMA:56665;;GAID:216;;http://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg;;MESH:A.14.254.646;;ncithesaurus:Periodontium
|is_a=UBERON:0000479;;UBERON:0004119;;UBERON:0004121
|synonym="paradentium" RELATED [MESH:A.14.254.646];;"periodontal ligament" RELATED INCONSISTENT [FMA:56665];;"periodontal membrane" RELATED [MA:0002467];;"tooth supporting structure" RELATED [MESH:A.14.254.646]
|comment=note FMA treats periodontium and periodontal ligament as the same
|comment=note FMA treats periodontium and periodontal ligament as the same
|alt_id=UBERON:FMA_56665-MA_0002467
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001758
|is_a=UBERON:0000479
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=periodontium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003672
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="paradentium" RELATED [MESH:A.14.254.646];;"periodontal ligament" RELATED INCONSISTENT [FMA:56665];;"periodontal membrane" RELATED [MA:0002467];;"tooth supporting structure" RELATED [MESH:A.14.254.646]
|union_of=
|xref=BTO:0001021;;FMA:56665;;GAID:216;;http://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg;;MESH:A.14.254.646;;ncithesaurus:Periodontium
}}
}}

Latest revision as of 17:20, 12 September 2014

Name:periodontium
Namespace:FANTOM
Definition:"The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium]
Xrefs:
links:

BTO:0001021
FMA:56665
GAID:216
[1]
MESH:A.14.254.646

ncithesaurus:Periodontium
Synonyms: "paradentium" RELATED [MESH:A.14.254.646]
"periodontal ligament" RELATED INCONSISTENT [FMA:56665]
"periodontal membrane" RELATED [MA:0002467]
"tooth supporting structure" RELATED [MESH:A.14.254.646]
Comments:note FMA treats periodontium and periodontal ligament as the same
Alt_id: UBERON:FMA_56665-MA_0002467

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000479(tissue)
part_of:UBERON:0003672(dentition)



Children

part of:CL:0002556 (fibroblast of periodontium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001758 (periodontium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.06e-63FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_19c8670d68dde466e135758d5df20e7ap1@ENST00000427892, p1@uc001dgp.1
7.06e-63FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_19c8670d68dde466e135758d5df20e7ap1@ENST00000427892, p1@uc001dgp.1
1.23e-62FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_a6fe15afb18b9ba4988c32de6f3d268dp@chr1:75599683..75599699, -
1.23e-62FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_a6fe15afb18b9ba4988c32de6f3d268dp@chr1:75599683..75599699, -
2.45e-58FFCP PHASE1:Hg19::chr6:707779..707821,+#_4ccc82409135baca1cf00e06ceb1a32cp@chr6:707779..707821, +
2.45e-58FFCP PHASE2:Hg19::chr6:707779..707821,+#_4ccc82409135baca1cf00e06ceb1a32cp@chr6:707779..707821, +
4.63e-53FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_2545d83fe9d8060ae2f78feca69a5b01p@chr1:75599672..75599682, -
4.63e-53FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_2545d83fe9d8060ae2f78feca69a5b01p@chr1:75599672..75599682, -
9.31e-47FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_2fc01b4fe5fa7634c9d426b74cc7fc43p2@LHX8
9.31e-47FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_2fc01b4fe5fa7634c9d426b74cc7fc43p2@LHX8
4.34e-43FFCP PHASE1:Hg19::chr1:75602043..75602093,+#_379e0d2d4c198fdebc462c11570c09c4p1@LHX8
4.34e-43FFCP PHASE2:Hg19::chr1:75602043..75602093,+#_379e0d2d4c198fdebc462c11570c09c4p1@LHX8
1.34e-37FFCP PHASE1:Hg19::chr6:129908113..129908144,-#_7fb499d54af7a0f555c92a3a3be6cc65p@chr6:129908113..129908144, -
1.34e-37FFCP PHASE2:Hg19::chr6:129908113..129908144,-#_7fb499d54af7a0f555c92a3a3be6cc65p@chr6:129908113..129908144, -
5.69e-35FFCP PHASE1:Hg19::chr2:172953513..172953549,-#_49643a93e1c8481891d6aa53155a9a12p@chr2:172953513..172953549, -
5.69e-35FFCP PHASE2:Hg19::chr2:172953513..172953549,-#_49643a93e1c8481891d6aa53155a9a12p@chr2:172953513..172953549, -
1.19e-32FFCP PHASE1:Hg19::chr6:1389871..1389876,+#_d6ef6faef80827b15c3de0493bcefdc2p4@FOXF2
1.19e-32FFCP PHASE2:Hg19::chr6:1389871..1389876,+#_d6ef6faef80827b15c3de0493bcefdc2p4@FOXF2
2.68e-31FFCP PHASE1:Hg19::chr18:34273182..34273194,+#_80caf3ab903823203055f7aec1da18d5p6@FHOD3
2.68e-31FFCP PHASE2:Hg19::chr18:34273182..34273194,+#_80caf3ab903823203055f7aec1da18d5p6@FHOD3
2.78e-30FFCP PHASE1:Hg19::chr4:152086796..152086808,-#_0c23777be41d4e5e8e64b9164b36af06p18@SH3D19
2.78e-30FFCP PHASE2:Hg19::chr4:152086796..152086808,-#_0c23777be41d4e5e8e64b9164b36af06p18@SH3D19
7.33e-29FFCP PHASE1:Hg19::chr6:1389613..1389637,-#_2b5414c617419e14060ed3b4de6883b5p@chr6:1389613..1389637, -
7.33e-29FFCP PHASE2:Hg19::chr6:1389613..1389637,-#_2b5414c617419e14060ed3b4de6883b5p@chr6:1389613..1389637, -
2.08e-27FFCP PHASE1:Hg19::chr12:115777087..115777091,+#_28b84382fdbf1e61382a853e5ced297ap@chr12:115777087..115777091, +
2.08e-27FFCP PHASE2:Hg19::chr12:115777087..115777091,+#_28b84382fdbf1e61382a853e5ced297ap@chr12:115777087..115777091, +
2.21e-25FFCP PHASE2:Hg19::chr11:7987028..7987043,-#_4dba9097502e6ad6e8a74f112c15a974p2@NLRP10
2.21e-25FFCP PHASE1:Hg19::chr11:7987028..7987043,-#_4dba9097502e6ad6e8a74f112c15a974p2@NLRP10
4.34e-23FFCP PHASE1:Hg19::chr1:75600979..75601005,+#_4e6b95766999864e5db9dfb9018bdb36p@chr1:75600979..75601005, +
4.34e-23FFCP PHASE2:Hg19::chr1:75600979..75601005,+#_4e6b95766999864e5db9dfb9018bdb36p@chr1:75600979..75601005, +
3.51e-22FFCP PHASE1:Hg19::chr18:65337698..65337712,+#_766a371db65db97bf25981adb699289ap@chr18:65337698..65337712, +
3.51e-22FFCP PHASE2:Hg19::chr18:65337698..65337712,+#_766a371db65db97bf25981adb699289ap@chr18:65337698..65337712, +
6.23e-22FFCP PHASE1:Hg19::chr1:31882992..31883005,+#_3e617948c6149036d7afafd342137c2bp14@SERINC2
6.23e-22FFCP PHASE2:Hg19::chr1:31882992..31883005,+#_3e617948c6149036d7afafd342137c2bp14@SERINC2
4.63e-21FFCP PHASE1:Hg19::chr9:96717678..96717689,-#_461373c1917def380539eb8e0f264aa7p2@BARX1
4.63e-21FFCP PHASE2:Hg19::chr9:96717678..96717689,-#_461373c1917def380539eb8e0f264aa7p2@BARX1
5.39e-21FFCP PHASE1:Hg19::chr10:28034772..28034783,-#_2b24f87f068816f7cfb9e8674eeb74eep4@MKX
5.39e-21FFCP PHASE2:Hg19::chr10:28034772..28034783,-#_2b24f87f068816f7cfb9e8674eeb74eep4@MKX
4.99e-20FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_e205b0daef08902e8ff3c6ee268a4e92p2@PAX9
4.99e-20FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_e205b0daef08902e8ff3c6ee268a4e92p2@PAX9
5.89e-20FFCP PHASE1:Hg19::chr1:75602768..75602785,+#_977750e6db63f72ac7d0864cc6761d7ep@chr1:75602768..75602785, +
5.89e-20FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_977750e6db63f72ac7d0864cc6761d7ep@chr1:75602768..75602785, +
6.5e-20FFCP PHASE1:Hg19::chr6:148761434..148761452,+#_aa6e6b0261f3c7eb4090a274614dc9fdp11@SASH1
6.5e-20FFCP PHASE2:Hg19::chr6:148761434..148761452,+#_aa6e6b0261f3c7eb4090a274614dc9fdp11@SASH1
3.13e-18FFCP PHASE2:Hg19::chr8:57354324..57354335,-#_a9cc7109c07806d421dc8b51f08a6d17p@chr8:57354324..57354335, -
3.13e-18FFCP PHASE1:Hg19::chr8:57354324..57354335,-#_a9cc7109c07806d421dc8b51f08a6d17p@chr8:57354324..57354335, -
3.96e-18FFCP PHASE2:Hg19::chr1:83982415..83982420,+#_7291bc68ad1f2ec232438a6b90252b76p@chr1:83982415..83982420, +
3.96e-18FFCP PHASE1:Hg19::chr1:83982415..83982420,+#_7291bc68ad1f2ec232438a6b90252b76p@chr1:83982415..83982420, +
4.73e-18FFCP PHASE1:Hg19::chr10:24738381..24738397,+#_5168fd95183bfac8315e8a7b812c475fp17@KIAA1217
4.73e-18FFCP PHASE2:Hg19::chr10:24738381..24738397,+#_5168fd95183bfac8315e8a7b812c475fp17@KIAA1217
6.46e-18FFCP PHASE1:Hg19::chr4:108204864..108204887,-#_12ce675e5fb17533affedbb29f1acd46p3@DKK2
6.46e-18FFCP PHASE2:Hg19::chr4:108204864..108204887,-#_12ce675e5fb17533affedbb29f1acd46p3@DKK2
9.07e-18FFCP PHASE2:Hg19::chr1:75602005..75602017,+#_0db8c72681a480e9f90258de78a001dfp@chr1:75602005..75602017, +
9.07e-18FFCP PHASE1:Hg19::chr1:75602749..75602758,+#_0db8c72681a480e9f90258de78a001dfp@chr1:75602749..75602758, +
9.07e-18FFCP PHASE2:Hg19::chr1:75602749..75602758,+#_0db8c72681a480e9f90258de78a001dfp@chr1:75602749..75602758, +
9.07e-18FFCP PHASE1:Hg19::chr4:14094655..14094663,+#_0db8c72681a480e9f90258de78a001dfp@chr4:14094655..14094663, +
9.07e-18FFCP PHASE2:Hg19::chr4:14094655..14094663,+#_0db8c72681a480e9f90258de78a001dfp@chr4:14094655..14094663, +
9.07e-18FFCP PHASE1:Hg19::chr1:75602005..75602017,+#_0db8c72681a480e9f90258de78a001dfp@chr1:75602005..75602017, +
9.28e-18FFCP PHASE1:Hg19::chr6:116479897..116479942,-#_dd18ac16e05c5ee3a96e5e33296523a8p2@COL10A1
9.28e-18FFCP PHASE2:Hg19::chr6:116479897..116479942,-#_dd18ac16e05c5ee3a96e5e33296523a8p2@COL10A1
1.22e-17FFCP PHASE1:Hg19::chr10:15761954..15761965,-#_185801a1f5011fbc24d5b7da86cb4927p7@ITGA8
1.22e-17FFCP PHASE2:Hg19::chr10:15761954..15761965,-#_185801a1f5011fbc24d5b7da86cb4927p7@ITGA8
1.85e-17FFCP PHASE1:Hg19::chr1:241577071..241577081,+#_530abf622f593964ef070205470dfab7p@chr1:241577071..241577081, +
1.85e-17FFCP PHASE2:Hg19::chr1:241577071..241577081,+#_530abf622f593964ef070205470dfab7p@chr1:241577071..241577081, +
3.81e-17FFCP PHASE2:Hg19::chr6:1389647..1389668,-#_573cd7f324f9b583432ed2e2e4245672p@chr6:1389647..1389668, -
3.81e-17FFCP PHASE1:Hg19::chr6:1389647..1389668,-#_573cd7f324f9b583432ed2e2e4245672p@chr6:1389647..1389668, -
4.15e-17FFCP PHASE1:Hg19::chr1:68257383..68257394,-#_52d6aa2f0658c60b7c2c842958665f6bp@chr1:68257383..68257394, -
4.15e-17FFCP PHASE2:Hg19::chr1:68257383..68257394,-#_52d6aa2f0658c60b7c2c842958665f6bp@chr1:68257383..68257394, -
6.03e-17FFCP PHASE2:Hg19::chr6:148761457..148761478,+#_6f725de4e60ed802bf070ca4fd0de318p8@SASH1
6.03e-17FFCP PHASE1:Hg19::chr6:148761457..148761478,+#_6f725de4e60ed802bf070ca4fd0de318p8@SASH1
2.11e-16FFCP PHASE2:Hg19::chr4:47857451..47857469,-#_3312e6cfccd86e03aac041158c6531d8p@chr4:47857451..47857469, -
2.11e-16FFCP PHASE1:Hg19::chr4:47857451..47857469,-#_3312e6cfccd86e03aac041158c6531d8p@chr4:47857451..47857469, -
2.59e-16FFCP PHASE1:Hg19::chr15:33406335..33406350,-#_bb8738ac6dfc320131ae1149d4b28e3bp@chr15:33406335..33406350, -
2.59e-16FFCP PHASE2:Hg19::chr15:33406335..33406350,-#_bb8738ac6dfc320131ae1149d4b28e3bp@chr15:33406335..33406350, -
3.17e-16FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_299809e2dba403a1d55f27dcaedfdb89p1@ENST00000555639
3.17e-16FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_299809e2dba403a1d55f27dcaedfdb89p1@ENST00000555639
4.64e-16FFCP PHASE1:Hg19::chr18:34273196..34273214,+#_75f6336a96b46cd26640f4158094bfdbp2@FHOD3
4.64e-16FFCP PHASE2:Hg19::chr18:34273196..34273214,+#_75f6336a96b46cd26640f4158094bfdbp2@FHOD3
7.23e-16FFCP PHASE1:Hg19::chr3:37204870..37204881,-#_fa6212d2d2afb85828d7ac852909f6adp@chr3:37204870..37204881, -
7.23e-16FFCP PHASE2:Hg19::chr3:37204870..37204881,-#_fa6212d2d2afb85828d7ac852909f6adp@chr3:37204870..37204881, -
1.02e-15FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_e029331023a882eeda8f903bd53cf99dp1@ENST00000449986
1.02e-15FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_e029331023a882eeda8f903bd53cf99dp1@ENST00000449986
1.12e-15FFCP PHASE2:Hg19::chr4:152090554..152090566,+#_3889b98fd0800a10fd217a59856e6f4ep@chr4:152090554..152090566, +
1.12e-15FFCP PHASE1:Hg19::chr4:152090554..152090566,+#_3889b98fd0800a10fd217a59856e6f4ep@chr4:152090554..152090566, +
1.13e-15FFCP PHASE1:Hg19::chr8:57354211..57354220,+#_4393fe8f83aeb347309481bd6e5831b6p@chr8:57354211..57354220, +
1.13e-15FFCP PHASE1:Hg19::chr18:59685444..59685459,-#_4393fe8f83aeb347309481bd6e5831b6p@chr18:59685444..59685459, -
1.13e-15FFCP PHASE2:Hg19::chr18:59685444..59685459,-#_4393fe8f83aeb347309481bd6e5831b6p@chr18:59685444..59685459, -
1.13e-15FFCP PHASE2:Hg19::chr8:57354211..57354220,+#_4393fe8f83aeb347309481bd6e5831b6p@chr8:57354211..57354220, +
1.31e-15FFCP PHASE1:Hg19::chr1:75600318..75600329,+#_fe82443a209b961a56426b4862485939p4@LHX8
1.31e-15FFCP PHASE2:Hg19::chr1:75600318..75600329,+#_fe82443a209b961a56426b4862485939p4@LHX8
1.31e-15FFCP PHASE1:Hg19::chr4:13890014..13890023,+#_fe82443a209b961a56426b4862485939p@chr4:13890014..13890023, +
1.31e-15FFCP PHASE2:Hg19::chr4:13890014..13890023,+#_fe82443a209b961a56426b4862485939p@chr4:13890014..13890023, +
2.33e-15FFCP PHASE1:Hg19::chr10:28033614..28033628,-#_b4880690db1604ab36c0453f7666a734p@chr10:28033614..28033628, -
2.33e-15FFCP PHASE2:Hg19::chr10:28033614..28033628,-#_b4880690db1604ab36c0453f7666a734p@chr10:28033614..28033628, -
4.6e-15FFCP PHASE1:Hg19::chr8:57354251..57354262,-#_0653b56faca2fafdf3fab7dcc951906fp@chr8:57354251..57354262, -
4.6e-15FFCP PHASE2:Hg19::chr8:57354251..57354262,-#_0653b56faca2fafdf3fab7dcc951906fp@chr8:57354251..57354262, -
5.3e-15FFCP PHASE1:Hg19::chr7:134005080..134005095,-#_5db111254dacf1dd580cbbed411cd570p@chr7:134005080..134005095, -
5.3e-15FFCP PHASE2:Hg19::chr7:134005080..134005095,-#_5db111254dacf1dd580cbbed411cd570p@chr7:134005080..134005095, -
5.54e-15FFCP PHASE1:Hg19::chr17:78808278..78808309,-#_3d7952b4333758c80a8be6b8d2b0b5adp@chr17:78808278..78808309, -
5.54e-15FFCP PHASE2:Hg19::chr17:78808278..78808309,-#_3d7952b4333758c80a8be6b8d2b0b5adp@chr17:78808278..78808309, -

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