UBERON:0001828: Difference between revisions

Latest revision as of 17:20, 12 September 2014

gingiva

Namespace:

FANTOM

Definition:

"The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva]

Xrefs:

Expandlinks:

Synonyms:

"gum" EXACT [FMA:59762]
"gum tissue" EXACT [UBERON:cjm]

Comments:

AO notes: FMA has gingiva of upper and lower jaw

Alt_id:

UBERON:FMA_59762-MA_0000342

Subset:

uberon_slim

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0003729(mouth mucosa)
part_of:	UBERON:0003729(mouth mucosa),UBERON:0011595(jaw region)

Children

part of:	UBERON:0001949 (gingival epithelium),CL:0002552 (fibroblast of gingiva)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
11222-116B7 (Fibroblast - Gingival, donor4 (GFH2))
11237-116D4 (Fibroblast - Gingival, donor1)
11302-117B6 (Gingival epithelial cells, donor2 (GEA14))
11303-117B7 (Fibroblast - Gingival, donor5 (GFH3))
11318-117D4 (Fibroblast - Gingival, donor2)
11379-118B2 (Gingival epithelial cells, donor3 (GEA15))
11394-118C8 (Fibroblast - Gingival, donor3)
11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
11922-125H5 (Fibroblast - Gingival, donor6 (control))

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001828 (gingiva), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
3.28e-61	FFCP PHASE2:Hg19::chr1:75599672..75599682,-	p@chr1:75599672..75599682, -
3.28e-61	FFCP PHASE1:Hg19::chr1:75599672..75599682,-	p@chr1:75599672..75599682, -
8.7e-48	FFCP PHASE2:Hg19::chr1:75598362..75598407,-	p1@ENST00000427892, p1@uc001dgp.1
8.7e-48	FFCP PHASE1:Hg19::chr1:75598362..75598407,-	p1@ENST00000427892, p1@uc001dgp.1
7.14e-38	FFCP PHASE2:Hg19::chr4:143470541..143470551,+	p@chr4:143470541..143470551, +
7.14e-38	FFCP PHASE1:Hg19::chr4:143470541..143470551,+	p@chr4:143470541..143470551, +
6.5e-34	FFCP PHASE1:Hg19::chr9:94586900..94586909,-	p@chr9:94586900..94586909, -
6.5e-34	FFCP PHASE2:Hg19::chr9:94586900..94586909,-	p@chr9:94586900..94586909, -
9.08e-34	FFCP PHASE2:Hg19::chr1:14465017..14465026,+	p@chr1:14465017..14465026, +
9.08e-34	FFCP PHASE2:Hg19::chr17:73753856..73753871,+	p1@CU674593
9.08e-34	FFCP PHASE1:Hg19::chr17:73753856..73753871,+	p1@CU674593
9.08e-34	FFCP PHASE1:Hg19::chr1:14465017..14465026,+	p@chr1:14465017..14465026, +
1.96e-33	FFCP PHASE2:Hg19::chr1:75599683..75599699,-	p@chr1:75599683..75599699, -
1.96e-33	FFCP PHASE1:Hg19::chr1:75599683..75599699,-	p@chr1:75599683..75599699, -
1.15e-32	FFCP PHASE1:Hg19::chr8:130798890..130798901,-	p3@GSDMC
1.15e-32	FFCP PHASE2:Hg19::chr8:130798890..130798901,-	p3@GSDMC
1.59e-32	FFCP PHASE1:Hg19::chr11:93754560..93754567,+	p@chr11:93754560..93754567, +
1.59e-32	FFCP PHASE2:Hg19::chr11:93754560..93754567,+	p@chr11:93754560..93754567, +
2.71e-32	FFCP PHASE2:Hg19::chr10:105791095..105791110,-	p@chr10:105791095..105791110, -
2.71e-32	FFCP PHASE1:Hg19::chr10:105791095..105791110,-	p@chr10:105791095..105791110, -
1.23e-28	FFCP PHASE2:Hg19::chr1:153533849..153533860,-	p@chr1:153533849..153533860, -
1.23e-28	FFCP PHASE1:Hg19::chr7:40883542..40883550,+	p@chr7:40883542..40883550, +
1.23e-28	FFCP PHASE1:Hg19::chr1:153533849..153533860,-	p@chr1:153533849..153533860, -
1.23e-28	FFCP PHASE2:Hg19::chr7:40883542..40883550,+	p@chr7:40883542..40883550, +
1.64e-28	FFCP PHASE1:Hg19::chr3:190252374..190252383,-	p@chr3:190252374..190252383, -
1.64e-28	FFCP PHASE2:Hg19::chr3:190252374..190252383,-	p@chr3:190252374..190252383, -
2.17e-28	FFCP PHASE2:Hg19::chr21:44957893..44957903,-	p@chr21:44957893..44957903, -
2.17e-28	FFCP PHASE1:Hg19::chr21:44957893..44957903,-	p@chr21:44957893..44957903, -
2.38e-28	FFCP PHASE2:Hg19::chr1:241577071..241577081,+	p@chr1:241577071..241577081, +
2.38e-28	FFCP PHASE1:Hg19::chr1:241577071..241577081,+	p@chr1:241577071..241577081, +
2.87e-28	FFCP PHASE2:Hg19::chr10:106205489..106205498,+	p@chr10:106205489..106205498, +
2.87e-28	FFCP PHASE1:Hg19::chr10:106205489..106205498,+	p@chr10:106205489..106205498, +
3.05e-27	FFCP PHASE2:Hg19::chr2:172953513..172953549,-	p@chr2:172953513..172953549, -
3.05e-27	FFCP PHASE1:Hg19::chr2:172953513..172953549,-	p@chr2:172953513..172953549, -
3.26e-27	FFCP PHASE2:Hg19::chr16:70597904..70597915,+	p5@SF3B3
3.26e-27	FFCP PHASE1:Hg19::chr16:70597904..70597915,+	p5@SF3B3
1.11e-25	FFCP PHASE2:Hg19::chr12:85306433..85306434,-	p5@SLC6A15
1.11e-25	FFCP PHASE2:Hg19::chr15:40531729..40531738,+	p15@PAK6
1.11e-25	FFCP PHASE1:Hg19::chr15:40531729..40531738,+	p15@PAK6
1.11e-25	FFCP PHASE1:Hg19::chr12:85306433..85306434,-	p5@SLC6A15
1.43e-25	FFCP PHASE2:Hg19::chr9:108870138..108870152,+	p1@uc004bcw.2
1.43e-25	FFCP PHASE1:Hg19::chr9:108870138..108870152,+	p1@uc004bcw.2
2.37e-25	FFCP PHASE2:Hg19::chr16:82671490..82671521,+	p@chr16:82671490..82671521, +
2.37e-25	FFCP PHASE1:Hg19::chr16:82671490..82671521,+	p@chr16:82671490..82671521, +
2.8e-25	FFCP PHASE1:Hg19::chr1:75600318..75600329,+	p4@LHX8
2.8e-25	FFCP PHASE2:Hg19::chr1:75600318..75600329,+	p4@LHX8
1.15e-24	FFCP PHASE1:Hg19::chr1:75600067..75600094,+	p2@LHX8
1.15e-24	FFCP PHASE2:Hg19::chr1:75600067..75600094,+	p2@LHX8
7.04e-24	FFCP PHASE2:Hg19::chr1:83982415..83982420,+	p@chr1:83982415..83982420, +
7.04e-24	FFCP PHASE1:Hg19::chr1:83982415..83982420,+	p@chr1:83982415..83982420, +
9.45e-24	FFCP PHASE2:Hg19::chr6:1389690..1389700,-	p@chr6:1389690..1389700, -
9.45e-24	FFCP PHASE1:Hg19::chr6:1389690..1389700,-	p@chr6:1389690..1389700, -
5.97e-23	FFCP PHASE1:Hg19::chr4:152086796..152086808,-	p18@SH3D19
5.97e-23	FFCP PHASE2:Hg19::chr4:152086796..152086808,-	p18@SH3D19
6.43e-23	FFCP PHASE2:Hg19::chr11:13030878..13030889,+	p2@RASSF10
6.43e-23	FFCP PHASE1:Hg19::chr11:13030878..13030889,+	p2@RASSF10
7.47e-23	FFCP PHASE2:Hg19::chr18:20493879..20493891,+	p@chr18:20493879..20493891, +
7.47e-23	FFCP PHASE1:Hg19::chr18:20493879..20493891,+	p@chr18:20493879..20493891, +
8.67e-23	FFCP PHASE2:Hg19::chr8:124850358..124850380,+	p@chr8:124850358..124850380, +
8.67e-23	FFCP PHASE1:Hg19::chr8:124850358..124850380,+	p@chr8:124850358..124850380, +
1.34e-22	FFCP PHASE2:Hg19::chr1:75602043..75602093,+	p1@LHX8
1.34e-22	FFCP PHASE1:Hg19::chr1:75602043..75602093,+	p1@LHX8
1.83e-21	FFCP PHASE2:Hg19::chr6:148761357..148761368,+	p21@SASH1
1.83e-21	FFCP PHASE1:Hg19::chr6:148761357..148761368,+	p21@SASH1
4.5e-21	FFCP PHASE2:Hg19::chr13:30259768..30259777,+	p@chr13:30259768..30259777, +
4.5e-21	FFCP PHASE1:Hg19::chr13:30259768..30259777,+	p@chr13:30259768..30259777, +
5.91e-21	FFCP PHASE2:Hg19::chr5:167247119..167247129,+	p@chr5:167247119..167247129, +
5.91e-21	FFCP PHASE1:Hg19::chr5:167247119..167247129,+	p@chr5:167247119..167247129, +
6.32e-21	FFCP PHASE1:Hg19::chr13:75017232..75017235,+	p@chr13:75017232..75017235, +
6.32e-21	FFCP PHASE2:Hg19::chr5:52619638..52619641,+	p@chr5:52619638..52619641, +
6.32e-21	FFCP PHASE1:Hg19::chr5:52619638..52619641,+	p@chr5:52619638..52619641, +
6.32e-21	FFCP PHASE2:Hg19::chr13:75017232..75017235,+	p@chr13:75017232..75017235, +
7.35e-21	FFCP PHASE2:Hg19::chr18:46607960..46607989,-	p@chr18:46607960..46607989, -
7.35e-21	FFCP PHASE1:Hg19::chr18:46607960..46607989,-	p@chr18:46607960..46607989, -
8.88e-21	FFCP PHASE2:Hg19::chr11:129511955..129511961,-	p@chr11:129511955..129511961, -
8.88e-21	FFCP PHASE1:Hg19::chr11:129511955..129511961,-	p@chr11:129511955..129511961, -
8.98e-21	FFCP PHASE1:Hg19::chr3:52440350..52440361,-	p@chr3:52440350..52440361, -
8.98e-21	FFCP PHASE2:Hg19::chr1:183213228..183213235,+	p@chr1:183213228..183213235, +
8.98e-21	FFCP PHASE1:Hg19::chr1:183213228..183213235,+	p@chr1:183213228..183213235, +
8.98e-21	FFCP PHASE2:Hg19::chr3:52440350..52440361,-	p@chr3:52440350..52440361, -
9.92e-21	FFCP PHASE2:Hg19::chr12:115777087..115777091,+	p@chr12:115777087..115777091, +
9.92e-21	FFCP PHASE1:Hg19::chr12:115777087..115777091,+	p@chr12:115777087..115777091, +
9.92e-21	FFCP PHASE1:Hg19::chr3:170459091..170459101,-	p4@ENST00000473110
9.92e-21	FFCP PHASE2:Hg19::chr3:170459091..170459101,-	p4@ENST00000473110
1.1e-20	FFCP PHASE1:Hg19::chr8:130798565..130798567,-	p4@GSDMC
1.1e-20	FFCP PHASE2:Hg19::chr10:5567644..5567657,+	p@chr10:5567644..5567657, +
1.1e-20	FFCP PHASE1:Hg19::chr10:5567644..5567657,+	p@chr10:5567644..5567657, +
1.1e-20	FFCP PHASE2:Hg19::chr8:130798565..130798567,-	p4@GSDMC
1.21e-20	FFCP PHASE1:Hg19::chr10:106205503..106205518,+	p@chr10:106205503..106205518, +
1.21e-20	FFCP PHASE2:Hg19::chr17:73720330..73720338,+	p22@ITGB4
1.21e-20	FFCP PHASE1:Hg19::chr17:73720330..73720338,+	p22@ITGB4
1.21e-20	FFCP PHASE2:Hg19::chr10:106205503..106205518,+	p@chr10:106205503..106205518, +
3.09e-19	FFCP PHASE1:Hg19::chr19:10665857..10665900,-	p@chr19:10665857..10665900, -
3.09e-19	FFCP PHASE2:Hg19::chr19:10665857..10665900,-	p@chr19:10665857..10665900, -
3.29e-19	FFCP PHASE2:Hg19::chr11:392625..392628,+	p13@PKP3
3.29e-19	FFCP PHASE1:Hg19::chr11:392625..392628,+	p13@PKP3
3.73e-19	FFCP PHASE1:Hg19::chr9:113801625..113801636,-	p29@LPAR1
3.73e-19	FFCP PHASE2:Hg19::chr9:113801625..113801636,-	p29@LPAR1
4.43e-18	FFCP PHASE2:Hg19::chr4:152086844..152086857,-	p11@SH3D19
4.43e-18	FFCP PHASE1:Hg19::chr4:152086844..152086857,-	p11@SH3D19

Showing 1 to 100 of 100 entries

@@ Line 10: / Line 10: @@
 |has_quality=
 |id=UBERON:0001828
-|is_a=UBERON:0000479;;UBERON:0004119;;UBERON:0004121
+|is_a=UBERON:0003729
 |is_obsolete=
 |located_in=
 |name=gingiva
-|namespace=
+|namespace=FANTOM
 |obo_creation_date=
-|part_of=UBERON:0000166;;UBERON:0003729
+|part_of=UBERON:0003729;;UBERON:0011595
 |preceded_by=
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl

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UBERON:0001828: Difference between revisions

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Latest revision as of 17:20, 12 September 2014

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