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|located_in=
|located_in=
|name=membranous labyrinth
|name=membranous labyrinth
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001846
|part_of=UBERON:0001846

Latest revision as of 17:21, 12 September 2014

Name:membranous labyrinth
Namespace:FANTOM
Definition:"Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth]
Xrefs:
links:

AAO:0011060
EHDAA:4698
EMAPA:17815
EV:0100367
FMA:61022
[ Gray924.png Gray924.png]
[ 200px-Gray924.png 200px-Gray924.png]
MA:0000242
ncithesaurus:Membranous_Labyrinth
SCTID:263790009
VHOG:0000729

XAO:0000194
Synonyms: "labyrinthus membranaceus" RELATED LATIN [Wikipedia:Membranous_labyrinth]
Comments:inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now
Alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0005641(otocyst epithelium)
part_of:UBERON:0001846(internal ear)



Children

part of:UBERON:0002499 (cochlear labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001849 (membranous labyrinth), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_ff6b9d38f6a159b0c39897a75ae91190p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_ff6b9d38f6a159b0c39897a75ae91190p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_ff6b9d38f6a159b0c39897a75ae91190p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_ff6b9d38f6a159b0c39897a75ae91190p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Strc
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_ff6b9d38f6a159b0c39897a75ae91190p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_ff6b9d38f6a159b0c39897a75ae91190p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_ff6b9d38f6a159b0c39897a75ae91190p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_ff6b9d38f6a159b0c39897a75ae91190p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_ff6b9d38f6a159b0c39897a75ae91190p41@Cacnb2
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Otof
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_ff6b9d38f6a159b0c39897a75ae91190p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_ff6b9d38f6a159b0c39897a75ae91190p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_ff6b9d38f6a159b0c39897a75ae91190p11@Tecta
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_ff6b9d38f6a159b0c39897a75ae91190p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_ff6b9d38f6a159b0c39897a75ae91190p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_ff6b9d38f6a159b0c39897a75ae91190p3@Epyc
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_ff6b9d38f6a159b0c39897a75ae91190p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_ff6b9d38f6a159b0c39897a75ae91190p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_ff6b9d38f6a159b0c39897a75ae91190p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Fanca

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