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{{UBERON
{{UBERON
|id=UBERON:0001899
|alt_id=UBERON:FMA_62009-MA_0000172-MIAA_0000422-ZFA_0000509
|name=epithalamus
|namespace=
|def="The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]. a dorsal posterior segment of the diencephalon (a segment in the middle of the brain also containing the hypothalamus and the thalamus) which includes the habenula, the stria medullaris and the pineal body. Its function is the connection between the limbic system to other parts of the brain[WP] Some functions of its components include the secretion of melatonin by the pineal gland. " [Wikipedia:Epithalamus]
|xref=AAO:0010482;;ABA:EPI;;BM:Die-Epi;;BTO:0000175;;EFO:0000918;;EHDAA:5433;;EHDAA2:0000448;;EMAPA:17532;;EV:0100220;;FMA:62009;;GAID:455;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Epithalamus.png/200px-Epithalamus.png;;MA:0000172;;MAT:0000422;;MESH:A.08.186.211.577.200;;MIAA:0000422;;ncithesaurus:Epithalamus;;NIF_GrossAnatomy:birnlex_1710;;OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA;;SCTID:281487003;;TAO:0000509;;VHOG:0000178;;ZFA:0000509
|is_a=UBERON:0000481;;UBERON:0004121
|synonym=
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_62009-MA_0000172-MIAA_0000422-ZFA_0000509
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]. a dorsal posterior segment of the diencephalon (a segment in the middle of the brain also containing the hypothalamus and the thalamus) which includes the habenula, the stria medullaris and the pineal body. Its function is the connection between the limbic system to other parts of the brain[WP] Some functions of its components include the secretion of melatonin by the pineal gland. " [Wikipedia:Epithalamus]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001899
|is_a=UBERON:0002784
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0001894
|name=epithalamus
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001897
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001903;;"spatially_disjoint_from" UBERON:0002733;;"spatially_disjoint_from" UBERON:0002736;;UBPROP:0000001 "Dorsal segment of the diencephalon containing the habenular ganglia, a choroid plexus, and the pineal organ.[AAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="epithalamus" RELATED LATIN [Wikipedia:Epithalamus]
|union_of=
|xref=AAO:0010482;;ABA:EPI;;BM:Die-Epi;;BTO:0000175;;EFO:0000918;;EHDAA2:0000448;;EHDAA:5433;;EMAPA:17532;;EV:0100220;;FMA:62009;;GAID:455;;http://upload.wikimedia.org/wikipedia/commons/c/cb/Epithalamus.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Epithalamus.png/200px-Epithalamus.png;;MA:0000172;;MAT:0000422;;MESH:A.08.186.211.577.200;;MIAA:0000422;;ncithesaurus:Epithalamus;;NIF_GrossAnatomy:birnlex_1710;;OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA;;SCTID:281487003;;TAO:0000509;;VHOG:0000178;;ZFA:0000509
}}
}}

Latest revision as of 17:23, 12 September 2014

Name:epithalamus
Namespace:FANTOM
Definition:"The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]. a dorsal posterior segment of the diencephalon (a segment in the middle of the brain also containing the hypothalamus and the thalamus) which includes the habenula, the stria medullaris and the pineal body. Its function is the connection between the limbic system to other parts of the brain[WP] Some functions of its components include the secretion of melatonin by the pineal gland. " [Wikipedia:Epithalamus]
Xrefs:
links:

AAO:0010482
ABA:EPI
BM:Die-Epi
BTO:0000175
EFO:0000918
EHDAA2:0000448
EHDAA:5433
EMAPA:17532
EV:0100220
FMA:62009
GAID:455
[ Epithalamus.png Epithalamus.png]
[ 200px-Epithalamus.png 200px-Epithalamus.png]
MA:0000172
MAT:0000422
MESH:A.08.186.211.577.200
MIAA:0000422
ncithesaurus:Epithalamus
NIF_GrossAnatomy:birnlex_1710
OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA
SCTID:281487003
TAO:0000509
VHOG:0000178

ZFA:0000509
Synonyms: "epithalamus" RELATED LATIN [Wikipedia:Epithalamus]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_62009-MA_0000172-MIAA_0000422-ZFA_0000509
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002784(regional part of diencephalon)
part_of:UBERON:0001897(dorsal plus ventral thalamus)



Children

part of:UBERON:0002757 (regional part of epithalamus),UBERON:0015238 (pineal complex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001899 (epithalamus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr8:135515989..135515991,+#_ae0613b2138001e5975adea23c7bf53ap@chr8:135515989..135515991, +
3.29e-195FFCP PHASE2:Hg19::chr17:74463567..74463574,+#_ae0613b2138001e5975adea23c7bf53ap4@AANAT
3.29e-195FFCP PHASE1:Hg19::chr8:135472861..135472868,-#_ae0613b2138001e5975adea23c7bf53ap@chr8:135472861..135472868, -
3.29e-195FFCP PHASE2:Hg19::chr1:13820103..13820109,+#_ae0613b2138001e5975adea23c7bf53ap@chr1:13820103..13820109, +
3.29e-195FFCP PHASE1:Hg19::chr6:13009334..13009341,-#_ae0613b2138001e5975adea23c7bf53ap@chr6:13009334..13009341, -
3.29e-195FFCP PHASE1:Hg19::chr12:60826120..60826127,+#_ae0613b2138001e5975adea23c7bf53ap@chr12:60826120..60826127, +
3.29e-195FFCP PHASE2:Hg19::chr1:57914395..57914398,+#_ae0613b2138001e5975adea23c7bf53ap@chr1:57914395..57914398, +
3.29e-195FFCP PHASE1:Hg19::chr16:18036005..18036011,-#_ae0613b2138001e5975adea23c7bf53ap@chr16:18036005..18036011, -
3.29e-195FFCP PHASE1:Hg19::chr12:121088132..121088135,+#_ae0613b2138001e5975adea23c7bf53ap15@CABP1
3.29e-195FFCP PHASE1:Hg19::chr11:18039672..18039678,-#_ae0613b2138001e5975adea23c7bf53ap@chr11:18039672..18039678, -
3.29e-195FFCP PHASE1:Hg19::chr1:154540028..154540037,+#_ae0613b2138001e5975adea23c7bf53ap4@CHRNB2
3.29e-195FFCP PHASE2:Hg19::chr9:37692930..37692936,+#_ae0613b2138001e5975adea23c7bf53ap@chr9:37692930..37692936, +
3.29e-195FFCP PHASE1:Hg19::chr13:52650486..52650491,-#_ae0613b2138001e5975adea23c7bf53ap@chr13:52650486..52650491, -
3.29e-195FFCP PHASE2:Hg19::chr17:55484129..55484139,+#_ae0613b2138001e5975adea23c7bf53ap@chr17:55484129..55484139, +
3.29e-195FFCP PHASE2:Hg19::chr7:9202487..9202498,-#_ae0613b2138001e5975adea23c7bf53ap@chr7:9202487..9202498, -
3.29e-195FFCP PHASE2:Hg19::chr16:50898038..50898042,-#_ae0613b2138001e5975adea23c7bf53ap@chr16:50898038..50898042, -
3.29e-195FFCP PHASE2:Hg19::chr3:54952412..54952416,-#_ae0613b2138001e5975adea23c7bf53ap@chr3:54952412..54952416, -
3.29e-195FFCP PHASE2:Hg19::chr10:80984180..80984190,-#_ae0613b2138001e5975adea23c7bf53ap@chr10:80984180..80984190, -
3.29e-195FFCP PHASE1:Hg19::chr16:50898098..50898107,-#_ae0613b2138001e5975adea23c7bf53ap@chr16:50898098..50898107, -
3.29e-195FFCP PHASE2:Hg19::chr8:99033409..99033415,+#_ae0613b2138001e5975adea23c7bf53ap16@MATN2
3.29e-195FFCP PHASE1:Hg19::chr8:116085391..116085419,+#_ae0613b2138001e5975adea23c7bf53ap@chr8:116085391..116085419, +
3.29e-195FFCP PHASE2:Hg19::chr2:17141934..17141935,+#_ae0613b2138001e5975adea23c7bf53ap@chr2:17141934..17141935, +
3.29e-195FFCP PHASE2:Hg19::chr1:99860883..99860921,-#_ae0613b2138001e5975adea23c7bf53ap@chr1:99860883..99860921, -
3.29e-195FFCP PHASE2:Hg19::chr11:18053180..18053192,-#_ae0613b2138001e5975adea23c7bf53ap@chr11:18053180..18053192, -
3.29e-195FFCP PHASE1:Hg19::chr1:204667243..204667248,+#_ae0613b2138001e5975adea23c7bf53ap@chr1:204667243..204667248, +
3.29e-195FFCP PHASE2:Hg19::chr7:9178350..9178369,-#_ae0613b2138001e5975adea23c7bf53ap@chr7:9178350..9178369, -
3.29e-195FFCP PHASE1:Hg19::chr11:18042584..18042593,-#_ae0613b2138001e5975adea23c7bf53ap@chr11:18042584..18042593, -
3.29e-195FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_ae0613b2138001e5975adea23c7bf53ap4@ENST00000439998
3.29e-195FFCP PHASE2:Hg19::chr14:57197193..57197194,-#_ae0613b2138001e5975adea23c7bf53ap1@ENST00000554597
3.29e-195FFCP PHASE1:Hg19::chr2:17185958..17185998,+#_ae0613b2138001e5975adea23c7bf53ap@chr2:17185958..17185998, +
3.29e-195FFCP PHASE1:Hg19::chr3:17085717..17085733,-#_ae0613b2138001e5975adea23c7bf53ap2@PLCL2-AS1
3.29e-195FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_ae0613b2138001e5975adea23c7bf53ap@chr3:139938385..139938390, +
3.29e-195FFCP PHASE1:Hg19::chrX:146290937..146290942,+#_ae0613b2138001e5975adea23c7bf53ap@chrX:146290937..146290942, +
3.29e-195FFCP PHASE2:Hg19::chr2:17040158..17040170,+#_ae0613b2138001e5975adea23c7bf53ap@chr2:17040158..17040170, +
3.29e-195FFCP PHASE2:Hg19::chr8:135522475..135522486,-#_ae0613b2138001e5975adea23c7bf53ap16@ZFAT
3.29e-195FFCP PHASE1:Hg19::chr11:72297712..72297715,-#_ae0613b2138001e5975adea23c7bf53ap@chr11:72297712..72297715, -
3.29e-195FFCP PHASE2:Hg19::chr2:4224059..4224062,-#_ae0613b2138001e5975adea23c7bf53ap@chr2:4224059..4224062, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473205..135473218,-#_ae0613b2138001e5975adea23c7bf53ap@chr8:135473205..135473218, -
3.29e-195FFCP PHASE2:Hg19::chr18:56963093..56963105,-#_ae0613b2138001e5975adea23c7bf53ap@chr18:56963093..56963105, -
3.29e-195FFCP PHASE2:Hg19::chr7:120842768..120842790,-#_ae0613b2138001e5975adea23c7bf53ap@chr7:120842768..120842790, -
3.29e-195FFCP PHASE1:Hg19::chr7:9186866..9186885,-#_ae0613b2138001e5975adea23c7bf53ap@chr7:9186866..9186885, -
3.29e-195FFCP PHASE2:Hg19::chr16:51175701..51175708,-#_ae0613b2138001e5975adea23c7bf53ap@chr16:51175701..51175708, -
3.29e-195FFCP PHASE1:Hg19::chr3:100942645..100942655,-#_ae0613b2138001e5975adea23c7bf53ap@chr3:100942645..100942655, -
3.29e-195FFCP PHASE2:Hg19::chr2:108604491..108604499,+#_ae0613b2138001e5975adea23c7bf53ap8@SLC5A7
3.29e-195FFCP PHASE1:Hg19::chr8:135515939..135515941,+#_ae0613b2138001e5975adea23c7bf53ap@chr8:135515939..135515941, +
3.29e-195FFCP PHASE2:Hg19::chr16:18066345..18066365,-#_ae0613b2138001e5975adea23c7bf53ap@chr16:18066345..18066365, -
3.29e-195FFCP PHASE1:Hg19::chr1:45782001..45782009,+#_ae0613b2138001e5975adea23c7bf53ap@chr1:45782001..45782009, +
3.29e-195FFCP PHASE1:Hg19::chr17:6328202..6328224,-#_ae0613b2138001e5975adea23c7bf53ap1@BC014398
3.29e-195FFCP PHASE1:Hg19::chr7:9782610..9782613,+#_ae0613b2138001e5975adea23c7bf53ap@chr7:9782610..9782613, +
3.29e-195FFCP PHASE1:Hg19::chr11:18041206..18041211,-#_ae0613b2138001e5975adea23c7bf53ap@chr11:18041206..18041211, -
3.29e-195FFCP PHASE2:Hg19::chr11:18067951..18067954,-#_ae0613b2138001e5975adea23c7bf53ap@chr11:18067951..18067954, -
3.29e-195FFCP PHASE2:Hg19::chr9:137539895..137539904,+#_ae0613b2138001e5975adea23c7bf53ap@chr9:137539895..137539904, +
3.29e-195FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_ae0613b2138001e5975adea23c7bf53ap@chr3:107545606..107545631, -
3.29e-195FFCP PHASE1:Hg19::chr8:135474173..135474185,-#_ae0613b2138001e5975adea23c7bf53ap@chr8:135474173..135474185, -
3.29e-195FFCP PHASE2:Hg19::chr8:135473063..135473075,-#_ae0613b2138001e5975adea23c7bf53ap@chr8:135473063..135473075, -
3.29e-195FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_ae0613b2138001e5975adea23c7bf53ap@chr7:129084265..129084288, -
3.29e-195FFCP PHASE1:Hg19::chr4:20985967..20985972,-#_ae0613b2138001e5975adea23c7bf53ap28@KCNIP4
3.29e-195FFCP PHASE2:Hg19::chr8:135504353..135504365,-#_ae0613b2138001e5975adea23c7bf53ap@chr8:135504353..135504365, -
3.29e-195FFCP PHASE2:Hg19::chr8:87755821..87755822,-#_ae0613b2138001e5975adea23c7bf53ap10@CNGB3
3.29e-195FFCP PHASE1:Hg19::chr1:57914395..57914398,+#_ae0613b2138001e5975adea23c7bf53ap@chr1:57914395..57914398, +
3.29e-195FFCP PHASE1:Hg19::chr15:55470964..55470974,-#_ae0613b2138001e5975adea23c7bf53ap@chr15:55470964..55470974, -
3.29e-195FFCP PHASE2:Hg19::chr1:45782019..45782028,+#_ae0613b2138001e5975adea23c7bf53ap@chr1:45782019..45782028, +
3.29e-195FFCP PHASE2:Hg19::chr7:9782665..9782674,+#_ae0613b2138001e5975adea23c7bf53ap@chr7:9782665..9782674, +
3.29e-195FFCP PHASE1:Hg19::chr1:13820103..13820109,+#_ae0613b2138001e5975adea23c7bf53ap@chr1:13820103..13820109, +
3.29e-195FFCP PHASE2:Hg19::chr1:240177602..240177607,+#_ae0613b2138001e5975adea23c7bf53ap17@FMN2
3.29e-195FFCP PHASE2:Hg19::chr7:75864329..75864335,+#_ae0613b2138001e5975adea23c7bf53ap11@SRRM3
3.29e-195FFCP PHASE2:Hg19::chr5:134871183..134871197,-#_ae0613b2138001e5975adea23c7bf53ap3@NEUROG1
3.29e-195FFCP PHASE2:Hg19::chr11:72297717..72297725,-#_ae0613b2138001e5975adea23c7bf53ap@chr11:72297717..72297725, -
3.29e-195FFCP PHASE1:Hg19::chr2:17141934..17141935,+#_ae0613b2138001e5975adea23c7bf53ap@chr2:17141934..17141935, +
3.29e-195FFCP PHASE1:Hg19::chr1:99860883..99860921,-#_ae0613b2138001e5975adea23c7bf53ap@chr1:99860883..99860921, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473472..135473477,-#_ae0613b2138001e5975adea23c7bf53ap@chr8:135473472..135473477, -
3.29e-195FFCP PHASE2:Hg19::chr3:192894646..192894653,-#_ae0613b2138001e5975adea23c7bf53ap2@ENST00000414895
3.29e-195FFCP PHASE1:Hg19::chr7:9202487..9202498,-#_ae0613b2138001e5975adea23c7bf53ap@chr7:9202487..9202498, -
3.29e-195FFCP PHASE2:Hg19::chr5:119867229..119867240,+#_ae0613b2138001e5975adea23c7bf53ap9@PRR16
3.29e-195FFCP PHASE2:Hg19::chr8:135473748..135473753,-#_ae0613b2138001e5975adea23c7bf53ap@chr8:135473748..135473753, -
3.29e-195FFCP PHASE1:Hg19::chr3:54952412..54952416,-#_ae0613b2138001e5975adea23c7bf53ap@chr3:54952412..54952416, -
3.29e-195FFCP PHASE2:Hg19::chr11:18041194..18041197,-#_ae0613b2138001e5975adea23c7bf53ap@chr11:18041194..18041197, -
3.29e-195FFCP PHASE2:Hg19::chr17:74463608..74463612,+#_ae0613b2138001e5975adea23c7bf53ap5@AANAT
3.29e-195FFCP PHASE1:Hg19::chr2:17040158..17040170,+#_ae0613b2138001e5975adea23c7bf53ap@chr2:17040158..17040170, +
3.29e-195FFCP PHASE1:Hg19::chr14:49512240..49512248,-#_ae0613b2138001e5975adea23c7bf53ap@chr14:49512240..49512248, -
3.29e-195FFCP PHASE1:Hg19::chr7:9178350..9178369,-#_ae0613b2138001e5975adea23c7bf53ap@chr7:9178350..9178369, -
3.29e-195FFCP PHASE2:Hg19::chr9:92310419..92310432,+#_ae0613b2138001e5975adea23c7bf53ap@chr9:92310419..92310432, +
3.29e-195FFCP PHASE2:Hg19::chr4:1188439..1188454,-#_ae0613b2138001e5975adea23c7bf53ap@chr4:1188439..1188454, -
3.29e-195FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_ae0613b2138001e5975adea23c7bf53ap@chr8:135504314..135504320, -
3.29e-195FFCP PHASE1:Hg19::chr7:36878535..36878540,+#_ae0613b2138001e5975adea23c7bf53ap4@ENST00000439998
3.29e-195FFCP PHASE2:Hg19::chr16:18036005..18036011,-#_ae0613b2138001e5975adea23c7bf53ap@chr16:18036005..18036011, -
3.29e-195FFCP PHASE2:Hg19::chr1:57914399..57914402,+#_ae0613b2138001e5975adea23c7bf53ap@chr1:57914399..57914402, +
3.29e-195FFCP PHASE1:Hg19::chr11:18040537..18040547,-#_ae0613b2138001e5975adea23c7bf53ap@chr11:18040537..18040547, -
3.29e-195FFCP PHASE1:Hg19::chr3:139938385..139938390,+#_ae0613b2138001e5975adea23c7bf53ap@chr3:139938385..139938390, +
3.29e-195FFCP PHASE1:Hg19::chr13:52650530..52650533,-#_ae0613b2138001e5975adea23c7bf53ap@chr13:52650530..52650533, -
3.29e-195FFCP PHASE2:Hg19::chr5:136699666..136699696,-#_ae0613b2138001e5975adea23c7bf53ap@chr5:136699666..136699696, -
3.29e-195FFCP PHASE1:Hg19::chrX:33146501..33146521,-#_ae0613b2138001e5975adea23c7bf53ap32@DMD
3.29e-195FFCP PHASE2:Hg19::chr16:50898098..50898107,-#_ae0613b2138001e5975adea23c7bf53ap@chr16:50898098..50898107, -
3.29e-195FFCP PHASE2:Hg19::chr3:54952420..54952425,-#_ae0613b2138001e5975adea23c7bf53ap@chr3:54952420..54952425, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_ae0613b2138001e5975adea23c7bf53ap@chr8:135473983..135473986, -
3.29e-195FFCP PHASE2:Hg19::chr8:99033417..99033423,+#_ae0613b2138001e5975adea23c7bf53ap17@MATN2
3.29e-195FFCP PHASE1:Hg19::chr2:4224059..4224062,-#_ae0613b2138001e5975adea23c7bf53ap@chr2:4224059..4224062, -
3.29e-195FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_ae0613b2138001e5975adea23c7bf53ap@chr8:87751918..87751928, -
3.29e-195FFCP PHASE1:Hg19::chr8:116127086..116127103,+#_ae0613b2138001e5975adea23c7bf53ap@chr8:116127086..116127103, +
3.29e-195FFCP PHASE1:Hg19::chr7:120842768..120842790,-#_ae0613b2138001e5975adea23c7bf53ap@chr7:120842768..120842790, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Dorsal segment of the diencephalon containing the habenular ganglia, a choroid plexus, and the pineal organ.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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