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{{UBERON
{{UBERON
|id=UBERON:0001905
|alt_id=UBERON:FMA_62033-MA_0000175-XAO_0000160
|name=pineal body
|anatomical_img_id=FMA:62033
|namespace=
|def="The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [FMA:62033, Wikipedia:Pineal_gland]
|xref=AAO:0010549;;ABA:PIN;;BM:P;;BTO:0001067;;EFO:0000865;;EHDAA2:0001466;;EHDAA:7523;;EMAPA:18778;;EV:0100131;;EV:0100221;;FMA:62033;;GAID:453;;galen:PinealGland;;http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Illu_pituitary_pineal_glands.jpg/200px-Illu_pituitary_pineal_glands.jpg;;MA:0000175;;MAT:0000448;;MESH:A.06.407.635;;ncithesaurus:Pineal_Gland;;NIF_GrossAnatomy:birnlex_1184;;NIF_GrossAnatomy:nlx_anat_1010009;;OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA;;SCTID:181126002;;TAO:0000019;;VHOG:0000051;;XAO:0000160;;ZFA:0000019
|is_a=UBERON:0002757;;UBERON:0003296;;UBERON:0010134
|synonym="corpus pineale" EXACT [];;"epiphysis" RELATED [ZFA:0000019];;"epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri];;"glandula pinealis" EXACT [FMA:TA];;"glandula pinealis" EXACT [FMA:62033, FMA:TA];;"pineal gland" EXACT [FMA:62033];;"pineal organ" EXACT [ZFA:0000019]
|comment=AO notes: part of midbrain in HOG, but this is inconsistent with ABA.
|comment=AO notes: part of midbrain in HOG, but this is inconsistent with ABA.
|alt_id=UBERON:FMA_62033-MA_0000175-XAO_0000160
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [FMA:62033, Wikipedia:Pineal_gland]
|subset=organ_slim;;uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001905
|is_a=UBERON:0002757 ;;UBERON:0003296 ;;UBERON:0010134
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=pineal body
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0015238
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001941;;"spatially_disjoint_from" UBERON:0001942;;UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001941;;"spatially_disjoint_from" UBERON:0001942;;UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string
|is_obsolete=
|subset=organ_slim;;uberon_slim;;vertebrate_core
|preceded_by=
|synonym="corpus pineale" EXACT [];;"epiphysis" RELATED [ZFA:0000019];;"epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri];;"glandula pinealis" EXACT [FMA:TA];;"glandula pinealis" EXACT [FMA:62033, FMA:TA];;"pineal gland" EXACT [FMA:62033];;"pineal organ" EXACT [ZFA:0000019]
|union_of=
|xref=AAO:0010549;;ABA:PIN;;BM:P;;BTO:0001067;;EFO:0000865;;EHDAA2:0001466;;EHDAA:7523;;EMAPA:18778;;EV:0100131;;EV:0100221;;FMA:62033;;GAID:453;;galen:PinealGland;;http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Illu_pituitary_pineal_glands.jpg/200px-Illu_pituitary_pineal_glands.jpg;;MA:0000175;;MAT:0000448;;MESH:A.06.407.635;;ncithesaurus:Pineal_Gland;;NIF_GrossAnatomy:birnlex_1184;;NIF_GrossAnatomy:nlx_anat_1010009;;OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA;;SCTID:181126002;;TAO:0000019;;VHOG:0000051;;XAO:0000160;;ZFA:0000019
}}
}}

Latest revision as of 17:23, 12 September 2014

Name:pineal body
Namespace:FANTOM
Definition:"The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [FMA:62033, Wikipedia:Pineal_gland]
Xrefs:
links:

AAO:0010549
ABA:PIN
BM:P
BTO:0001067
EFO:0000865
EHDAA2:0001466
EHDAA:7523
EMAPA:18778
EV:0100131
EV:0100221
FMA:62033
GAID:453
galen:PinealGland
[1]
[2]
MA:0000175
MAT:0000448
MESH:A.06.407.635
ncithesaurus:Pineal_Gland
NIF_GrossAnatomy:birnlex_1184
NIF_GrossAnatomy:nlx_anat_1010009
OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA
SCTID:181126002
TAO:0000019
VHOG:0000051
XAO:0000160

ZFA:0000019
Synonyms: "corpus pineale" EXACT []
"epiphysis" RELATED [ZFA:0000019]
"epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri]
"glandula pinealis" EXACT [FMA:TA]
"glandula pinealis" EXACT [FMA:62033, FMA:TA]
"pineal gland" EXACT [FMA:62033]
"pineal organ" EXACT [ZFA:0000019]
Comments:AO notes: part of midbrain in HOG, but this is inconsistent with ABA.
Alt_id: UBERON:FMA_62033-MA_0000175-XAO_0000160
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002757(regional part of epithalamus),UBERON:0003296(gland of diencephalon),UBERON:0010134(secretory circumventricular organ)
part_of:UBERON:0015238(pineal complex)



Children

derives from:FF:0010160 (human pineal gland - adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001905 (pineal body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.