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{{UBERON
{{UBERON
|id=UBERON:0001982
|alt_id=UBERON:FMA_63194-MA_0000065-XAO_0000116
|name=capillary
|namespace=
|def="Microvessel of the blood circulation system lined with vascular endothelial cells[ZFA]. Any of the smallest blood vessels connecting arterioles with venules." [NLM:capillary, Wikipedia:Capillary]
|xref=AAO:0010252;;BTO:0002045;;EFO:0001906;;EMAPA:28039;;EMAPA:28075;;EV:0100035;;FMA:63194;;http://upload.wikimedia.org/wikipedia/commons/2/2f/A_red_blood_cell_in_a_capillary\,_pancreatic_tissue_-_TEM.jpg;;MA:0000065;;MESH:A.07.231.432.410;;ncithesaurus:Capillary;;NIF_GrossAnatomy:nlx_anat_090902;;OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA;;TAO:0005250;;VHOG:0001253;;XAO:0000116;;ZFA:0005250
|is_a=UBERON:0001981;;UBERON:0010523
|synonym="blood capillary" EXACT [];;"capillary vessel" EXACT []
|comment=
|comment=
|alt_id=UBERON:FMA_63194-MA_0000065-XAO_0000116
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Microvessel of the blood circulation system lined with vascular endothelial cells[ZFA]. Any of the smallest blood vessels connecting arterioles with venules." [NLM:capillary, Wikipedia:Capillary]
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001982
|is_a=UBERON:0001981 ;;UBERON:0010523
|is_obsolete=
|located_in=
|located_in=
|name=capillary
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Any of the tiny blood vessels connecting the arterioles to the venules.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Any of the tiny blood vessels connecting the arterioles to the venules.[AAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="blood capillary" EXACT [];;"capillary vessel" EXACT []
|union_of=
|xref=AAO:0010252;;BTO:0002045;;EFO:0001906;;EMAPA:28039;;EMAPA:28075;;EV:0100035;;FMA:63194;;http://upload.wikimedia.org/wikipedia/commons/2/2f/A_red_blood_cell_in_a_capillary\,_pancreatic_tissue_-_TEM.jpg;;MA:0000065;;MESH:A.07.231.432.410;;ncithesaurus:Capillary;;NIF_GrossAnatomy:nlx_anat_090902;;OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA;;TAO:0005250;;VHOG:0001253;;XAO:0000116;;ZFA:0005250
}}
}}

Latest revision as of 17:23, 12 September 2014

Name:capillary
Namespace:FANTOM
Definition:"Microvessel of the blood circulation system lined with vascular endothelial cells[ZFA]. Any of the smallest blood vessels connecting arterioles with venules." [NLM:capillary, Wikipedia:Capillary]
Xrefs:
links:

AAO:0010252
BTO:0002045
EFO:0001906
EMAPA:28039
EMAPA:28075
EV:0100035
FMA:63194
[1]
MA:0000065
MESH:A.07.231.432.410
ncithesaurus:Capillary
NIF_GrossAnatomy:nlx_anat_090902
OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA
TAO:0005250
VHOG:0001253
XAO:0000116

ZFA:0005250
Synonyms: "blood capillary" EXACT []
"capillary vessel" EXACT []
Alt_id: UBERON:FMA_63194-MA_0000065-XAO_0000116
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001981(blood vessel),UBERON:0010523(microcirculatory vessel)



Children

is a:UBERON:2005260 (fenestrated capillary)
part of:UBERON:0001915 (endothelium of capillary)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11265-116G5 (Endothelial Cells - Microvascular, donor1)
  • 11342-117G1 (Endothelial Cells - Microvascular, donor2)
  • 11414-118F1 (Endothelial Cells - Microvascular, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001982 (capillary), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.06e-99FFCP PHASE2:Hg19::chr15:65935283..65935297,+#_d93d5de66e02baf3806c3c0d25496b22p11@SLC24A1
4.06e-99FFCP PHASE1:Hg19::chr15:65935283..65935297,+#_d93d5de66e02baf3806c3c0d25496b22p11@SLC24A1
6.24e-88FFCP PHASE2:Hg19::chr12:6161828..6161837,-#_2b959f29f41ca4f86a2c6786fe63f830p@chr12:6161828..6161837, -
6.24e-88FFCP PHASE1:Hg19::chr12:6161828..6161837,-#_2b959f29f41ca4f86a2c6786fe63f830p@chr12:6161828..6161837, -
9.74e-88FFCP PHASE2:Hg19::chr13:102379103..102379108,-#_a3688a3eebe91ab4df10fdb58fee607ap@chr13:102379103..102379108, -
9.74e-88FFCP PHASE1:Hg19::chr13:102379103..102379108,-#_a3688a3eebe91ab4df10fdb58fee607ap@chr13:102379103..102379108, -
2.28e-85FFCP PHASE2:Hg19::chr1:214453986..214454002,+#_53e20c5ed156055a65f5c1b3fddd3388p10@SMYD2
2.28e-85FFCP PHASE1:Hg19::chr1:214453986..214454002,+#_53e20c5ed156055a65f5c1b3fddd3388p10@SMYD2
3.04e-85FFCP PHASE1:Hg19::chr11:108743594..108743616,+#_550432dbee7b0a2748828d32a31b630cp@chr11:108743594..108743616, +
3.04e-85FFCP PHASE2:Hg19::chr11:108743594..108743616,+#_550432dbee7b0a2748828d32a31b630cp@chr11:108743594..108743616, +
7.21e-85FFCP PHASE2:Hg19::chr1:94526344..94526353,-#_492aa60256e7f084da9cabfd45c3cd07p4@ABCA4
7.21e-85FFCP PHASE1:Hg19::chr1:94526344..94526353,-#_492aa60256e7f084da9cabfd45c3cd07p4@ABCA4
1.28e-84FFCP PHASE2:Hg19::chr9:13446440..13446456,+#_fbbb1725c99be3f0a7cc23986742e202p2@ENST00000428006
1.28e-84FFCP PHASE1:Hg19::chr9:13446440..13446456,+#_fbbb1725c99be3f0a7cc23986742e202p2@ENST00000428006
2.27e-84FFCP PHASE1:Hg19::chr18:54339823..54339834,+#_c332eec2016dfae6bfbe91a3783c5124p8@WDR7
2.27e-84FFCP PHASE2:Hg19::chr18:54339823..54339834,+#_c332eec2016dfae6bfbe91a3783c5124p8@WDR7
3.03e-84FFCP PHASE1:Hg19::chr7:79998842..79998855,+#_0e298fea96f04faccc7d15d9a93d3690p25@CD36
3.03e-84FFCP PHASE2:Hg19::chr7:79998842..79998855,+#_0e298fea96f04faccc7d15d9a93d3690p25@CD36
4.55e-74FFCP PHASE1:Hg19::chr4:38057520..38057536,-#_979c4f5863a5b8988025260f3672f664p@chr4:38057520..38057536, -
4.55e-74FFCP PHASE2:Hg19::chr4:38057520..38057536,-#_979c4f5863a5b8988025260f3672f664p@chr4:38057520..38057536, -
5.01e-67FFCP PHASE1:Hg19::chr20:62679771..62679782,-#_b93cab3baa681b2da70d144f67140ee3p4@SOX18
5.01e-67FFCP PHASE2:Hg19::chr20:62679771..62679782,-#_b93cab3baa681b2da70d144f67140ee3p4@SOX18
2.39e-66FFCP PHASE1:Hg19::chr2:122514086..122514090,+#_8a54abe239619e4fc82fdcc30b22d2a3p5@TSN
2.39e-66FFCP PHASE2:Hg19::chr2:122514086..122514090,+#_8a54abe239619e4fc82fdcc30b22d2a3p5@TSN
2.39e-66FFCP PHASE1:Hg19::chr17:54893310..54893315,-#_8a54abe239619e4fc82fdcc30b22d2a3p15@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr17:54893310..54893315,-#_8a54abe239619e4fc82fdcc30b22d2a3p15@C17orf67
1.33e-60FFCP PHASE2:Hg19::chr3:30560333..30560348,+#_78aeeca4df67f4a8336469e48dc4c9f2p@chr3:30560333..30560348, +
1.33e-60FFCP PHASE1:Hg19::chr3:30560333..30560348,+#_78aeeca4df67f4a8336469e48dc4c9f2p@chr3:30560333..30560348, +
1.51e-54FFCP PHASE2:Hg19::chr2:56149828..56149839,-#_0f739b94c634acba84d6c558467c23c4p17@EFEMP1
1.51e-54FFCP PHASE1:Hg19::chr2:56149828..56149839,-#_0f739b94c634acba84d6c558467c23c4p17@EFEMP1
2.87e-53FFCP PHASE2:Hg19::chr5:106837881..106837888,-#_19a1ff1697eca95f33a837cdb0f96cb6p@chr5:106837881..106837888, -
2.87e-53FFCP PHASE1:Hg19::chr5:106837881..106837888,-#_19a1ff1697eca95f33a837cdb0f96cb6p@chr5:106837881..106837888, -
2.87e-53FFCP PHASE2:Hg19::chr2:73311401..73311431,-#_19a1ff1697eca95f33a837cdb0f96cb6p17@RAB11FIP5
2.87e-53FFCP PHASE1:Hg19::chr2:73311401..73311431,-#_19a1ff1697eca95f33a837cdb0f96cb6p17@RAB11FIP5
3.75e-53FFCP PHASE2:Hg19::chr15:74935416..74935419,-#_f6e572a40e4fd928d8c18c2209dd82cdp@chr15:74935416..74935419, -
3.75e-53FFCP PHASE1:Hg19::chr15:74935416..74935419,-#_f6e572a40e4fd928d8c18c2209dd82cdp@chr15:74935416..74935419, -
2.64e-50FFCP PHASE2:Hg19::chr12:4690021..4690046,+#_da374a8617e14f1c6182e5bd93187393p@chr12:4690021..4690046, +
2.64e-50FFCP PHASE1:Hg19::chr12:4690021..4690046,+#_da374a8617e14f1c6182e5bd93187393p@chr12:4690021..4690046, +
4.38e-50FFCP PHASE2:Hg19::chr17:28534912..28534942,-#_4b4d73886be636c69f56f1bce01ae043p@chr17:28534912..28534942, -
4.38e-50FFCP PHASE1:Hg19::chr17:28534912..28534942,-#_4b4d73886be636c69f56f1bce01ae043p@chr17:28534912..28534942, -
1.03e-46FFCP PHASE1:Hg19::chr4:189881560..189881604,-#_a03c75e7afc41bfa3964544ca8dba60ap@chr4:189881560..189881604, -
1.03e-46FFCP PHASE2:Hg19::chr4:189881560..189881604,-#_a03c75e7afc41bfa3964544ca8dba60ap@chr4:189881560..189881604, -
1.65e-46FFCP PHASE1:Hg19::chr22:19748407..19748412,+#_24d848ff131c1904443321abc460b453p5@TBX1
1.65e-46FFCP PHASE2:Hg19::chr22:19748407..19748412,+#_24d848ff131c1904443321abc460b453p5@TBX1
5.0e-45FFCP PHASE2:Hg19::chr6:168195978..168195989,+#_c5044484dc36e1a5a12f5a89806a5514p3@LOC441179
5.0e-45FFCP PHASE1:Hg19::chr6:168195978..168195989,+#_c5044484dc36e1a5a12f5a89806a5514p3@LOC441179
4.49e-44FFCP PHASE2:Hg19::chr15:65935213..65935234,+#_1efa79b5d4b3a3d53c508410c0a8c122p8@SLC24A1
4.49e-44FFCP PHASE1:Hg19::chr15:65935213..65935234,+#_1efa79b5d4b3a3d53c508410c0a8c122p8@SLC24A1
1.43e-43FFCP PHASE2:Hg19::chr5:141337703..141337712,-#_c9c58183d20612cd4d814092976253dcp4@PCDH12
1.43e-43FFCP PHASE1:Hg19::chr5:141337703..141337712,-#_c9c58183d20612cd4d814092976253dcp4@PCDH12
1.31e-40FFCP PHASE1:Hg19::chr22:19748074..19748094,-#_ab51308745128867f29723615941586cp@chr22:19748074..19748094, -
1.31e-40FFCP PHASE2:Hg19::chr22:19748074..19748094,-#_ab51308745128867f29723615941586cp@chr22:19748074..19748094, -
1.23e-38FFCP PHASE2:Hg19::chr2:33661536..33661549,+#_858d89fa9c19bbea780cd1f4749b7a11p17@RASGRP3
1.23e-38FFCP PHASE1:Hg19::chr2:33661536..33661549,+#_858d89fa9c19bbea780cd1f4749b7a11p17@RASGRP3
2.18e-38FFCP PHASE2:Hg19::chr6:49533964..49533975,+#_ff4f784df9ef6c821d1812c619f566f6p@chr6:49533964..49533975, +
2.18e-38FFCP PHASE1:Hg19::chr6:49533964..49533975,+#_ff4f784df9ef6c821d1812c619f566f6p@chr6:49533964..49533975, +
3.19e-38FFCP PHASE2:Hg19::chr6:46922535..46922542,-#_054693851c18fcde0b19ea8b2b3de3afp9@GPR116
3.19e-38FFCP PHASE1:Hg19::chr6:46922535..46922542,-#_054693851c18fcde0b19ea8b2b3de3afp9@GPR116
2.08e-36FFCP PHASE1:Hg19::chr6:84849274..84849294,+#_2535f10b6cce75910875221f75287ec8p@chr6:84849274..84849294, +
2.08e-36FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_2535f10b6cce75910875221f75287ec8p@chr10:3477893..3477912, -
2.08e-36FFCP PHASE2:Hg19::chr6:84849274..84849294,+#_2535f10b6cce75910875221f75287ec8p@chr6:84849274..84849294, +
2.08e-36FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_2535f10b6cce75910875221f75287ec8p@chr10:3477893..3477912, -
3.94e-34FFCP PHASE2:Hg19::chr3:30560368..30560379,+#_592bca6f814299e7a2a6d3569e55d615p@chr3:30560368..30560379, +
3.94e-34FFCP PHASE1:Hg19::chr3:30560368..30560379,+#_592bca6f814299e7a2a6d3569e55d615p@chr3:30560368..30560379, +
5.51e-34FFCP PHASE2:Hg19::chr4:144507245..144507268,-#_068aca454215d9348a3a0962704d0799p@chr4:144507245..144507268, -
5.51e-34FFCP PHASE1:Hg19::chr4:144507245..144507268,-#_068aca454215d9348a3a0962704d0799p@chr4:144507245..144507268, -
5.96e-34FFCP PHASE1:Hg19::chr10:4823046..4823055,-#_630d283ad6962905d9968064e4077dbep@chr10:4823046..4823055, -
5.96e-34FFCP PHASE1:Hg19::chr15:65398647..65398656,-#_630d283ad6962905d9968064e4077dbep3@UBAP1L
5.96e-34FFCP PHASE2:Hg19::chr15:65398647..65398656,-#_630d283ad6962905d9968064e4077dbep3@UBAP1L
5.96e-34FFCP PHASE2:Hg19::chr10:4823046..4823055,-#_630d283ad6962905d9968064e4077dbep@chr10:4823046..4823055, -
6.51e-34FFCP PHASE2:Hg19::chr1:47183850..47183861,-#_db9661da22ac980db13af07d3b5538b2p12@KIAA0494
6.51e-34FFCP PHASE1:Hg19::chr1:47183850..47183861,-#_db9661da22ac980db13af07d3b5538b2p12@KIAA0494
6.76e-34FFCP PHASE2:Hg19::chr1:228290095..228290116,-#_e7b888f071000069b9ed92d725d7aa53p@chr1:228290095..228290116, -
6.76e-34FFCP PHASE1:Hg19::chr1:228290095..228290116,-#_e7b888f071000069b9ed92d725d7aa53p@chr1:228290095..228290116, -
7.7e-34FFCP PHASE2:Hg19::chr22:19746577..19746611,+#_ec3cc45754639cbac5922b75fc22c669p@chr22:19746577..19746611, +
7.7e-34FFCP PHASE1:Hg19::chr17:65990349..65990362,-#_ec3cc45754639cbac5922b75fc22c669p@chr17:65990349..65990362, -
7.7e-34FFCP PHASE2:Hg19::chr17:65990349..65990362,-#_ec3cc45754639cbac5922b75fc22c669p@chr17:65990349..65990362, -
7.7e-34FFCP PHASE1:Hg19::chr19:47231566..47231577,-#_ec3cc45754639cbac5922b75fc22c669p@chr19:47231566..47231577, -
7.7e-34FFCP PHASE1:Hg19::chr22:19746577..19746611,+#_ec3cc45754639cbac5922b75fc22c669p@chr22:19746577..19746611, +
7.7e-34FFCP PHASE2:Hg19::chr19:47231566..47231577,-#_ec3cc45754639cbac5922b75fc22c669p@chr19:47231566..47231577, -
8.46e-34FFCP PHASE1:Hg19::chr4:183399811..183399829,+#_efa1c0e1406371e9da79f78c08d6df60p@chr4:183399811..183399829, +
8.46e-34FFCP PHASE2:Hg19::chr4:183399811..183399829,+#_efa1c0e1406371e9da79f78c08d6df60p@chr4:183399811..183399829, +
9.1e-34FFCP PHASE1:Hg19::chr7:107332367..107332379,+#_20ed3bbe53fd25306e51f03513f68c6ep3@SLC26A4
9.1e-34FFCP PHASE2:Hg19::chr7:107332367..107332379,+#_20ed3bbe53fd25306e51f03513f68c6ep3@SLC26A4
2.58e-33FFCP PHASE2:Hg19::chr2:71730376..71730412,+#_a85ca138a023be5cb70079350a616f18p@chr2:71730376..71730412, +
2.58e-33FFCP PHASE1:Hg19::chr2:71730376..71730412,+#_a85ca138a023be5cb70079350a616f18p@chr2:71730376..71730412, +
6.66e-33FFCP PHASE2:Hg19::chr9:139553916..139553927,+#_7fe594ec69492002e68eec6d71107279p@chr9:139553916..139553927, +
6.66e-33FFCP PHASE1:Hg19::chr9:139553916..139553927,+#_7fe594ec69492002e68eec6d71107279p@chr9:139553916..139553927, +
2.17e-32FFCP PHASE1:Hg19::chr10:3466752..3466759,-#_fd4ccdee251600f95d5df587406646dep@chr10:3466752..3466759, -
2.17e-32FFCP PHASE2:Hg19::chr10:3466752..3466759,-#_fd4ccdee251600f95d5df587406646dep@chr10:3466752..3466759, -
2.68e-32FFCP PHASE2:Hg19::chr12:96841308..96841312,+#_def83c1feffc419589acb2180ed17c6fp@chr12:96841308..96841312, +
2.68e-32FFCP PHASE1:Hg19::chr12:96841308..96841312,+#_def83c1feffc419589acb2180ed17c6fp@chr12:96841308..96841312, +
2.66e-31FFCP PHASE2:Hg19::chr12:120142354..120142372,-#_609d611eee1c184811f45719e5e1dbe2p@chr12:120142354..120142372, -
2.66e-31FFCP PHASE1:Hg19::chr12:120142354..120142372,-#_609d611eee1c184811f45719e5e1dbe2p@chr12:120142354..120142372, -
6.66e-31FFCP PHASE2:Hg19::chr1:61415107..61415136,-#_0eb0d0b4c8350a06e14289753fbf1d23p@chr1:61415107..61415136, -
6.66e-31FFCP PHASE1:Hg19::chr1:61415107..61415136,-#_0eb0d0b4c8350a06e14289753fbf1d23p@chr1:61415107..61415136, -
9.03e-31FFCP PHASE2:Hg19::chr15:89736241..89736275,+#_15ab8ba1ba2344041da671d0a02d5352p@chr15:89736241..89736275, +
9.03e-31FFCP PHASE1:Hg19::chr15:89736241..89736275,+#_15ab8ba1ba2344041da671d0a02d5352p@chr15:89736241..89736275, +
4.84e-30FFCP PHASE2:Hg19::chr10:4822908..4822927,-#_97e9db1aaa43b0342b746186222ec5f6p@chr10:4822908..4822927, -
4.84e-30FFCP PHASE1:Hg19::chr10:4822908..4822927,-#_97e9db1aaa43b0342b746186222ec5f6p@chr10:4822908..4822927, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Any of the tiny blood vessels connecting the arterioles to the venules.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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