UBERON:0002075: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_7085-XAO_0003034 | ||
| | |anatomical_img_id=FMA:7085 | ||
|comment=general anatomical term in FMA. Note that we place the MA class here temporarily, although properly systems should be distinguished from organs | |comment=general anatomical term in FMA. Note that we place the MA class here temporarily, although properly systems should be distinguished from organs | ||
|created_by= | |created_by= | ||
| | |def="An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper." [BTO:0001491, Wikipedia:Viscus] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002075 | |||
|is_a=UBERON:0005177 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
| | |name=viscus | ||
| | |namespace=FANTOM | ||
| | |obo_creation_date= | ||
|part_of=UBERON:0002100 | |||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper.[AAO]" xsd:string | |||
|subset=organ_slim;;uberon_slim | |||
|synonym="viscera" RELATED [];;"visceral organ" EXACT [RETIRED_EHDAA2:0002201] | |||
|union_of= | |||
|xref=AAO:0010386;;BTO:0001491;;EHDAA:512;;EMAPA:16245;;FMA:7085;;MA:0000019;;MESH:A.01.960;;ncithesaurus:Viscera;;RETIRED_EHDAA2:0002201;;SCTID:118760003;;XAO:0003034 | |||
}} | }} | ||
Latest revision as of 17:25, 12 September 2014
| Name: | viscus | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper." [BTO:0001491, Wikipedia:Viscus] | |
| Xrefs: |
| |
| Synonyms: |
"viscera" RELATED [] "visceral organ" EXACT [RETIRED_EHDAA2:0002201] | |
| Comments: | general anatomical term in FMA. Note that we place the MA class here temporarily, although properly systems should be distinguished from organs | |
| Alt_id: | UBERON:FMA_7085-XAO_0003034 | |
| Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005177(trunk region element) |
|---|---|
| part_of: | UBERON:0002100(trunk) |
Children
| is a: | UBERON:0001255 (urinary bladder),UBERON:0001264 (pancreas),UBERON:0017672 (abdominal viscera) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10095-102C5
- 10198-103E9 (gall bladder, adult)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
- 10438-106E6 (ductal cell carcinoma cell line:KLM-1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10095-102C5
- 10198-103E9 (gall bladder, adult)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
- 10438-106E6 (ductal cell carcinoma cell line:KLM-1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002075 (viscus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
