Personal tools

UBERON:0002114: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0002114 |name=duodenum |namespace= |def="The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is...")
 
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002114
|alt_id=UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236
|name=duodenum
|anatomical_img_id=FMA:7206
|namespace=
|def="The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum]
|xref=AAO:0010402;;BTO:0000365;;EFO:0000851;;EHDAA:3830;;EHDAA:3937;;EMAPA:17178;;EMAPA:17193;;EMAPA:18661;;EMAPA:18852;;EV:0100073;;FMA:7206;;GAID:284;;galen:Duodenum;;MA:0000338;;MAT:0000044;;MESH:A.03.492.411.620.270;;MIAA:0000044;;ncithesaurus:Duodenum;;OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA;;SCTID:181247007;;VHOG:0000052;;XAO:0000236
|is_a=UBERON:0004921
|synonym="proximal intestine" RELATED [BTO:0000365];;"upper intestine" RELATED [BTO:0000365]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002114
|is_a=UBERON:0004921
|is_obsolete=
|located_in=
|located_in=
|name=duodenum
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002108
|part_of=UBERON:0002108
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value="dubious_for_taxon" NCBITaxon:7955;;IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim;;vertebrate_core
|synonym="proximal intestine" RELATED [BTO:0000365];;"upper intestine" RELATED [BTO:0000365]
|union_of=
|xref=AAO:0010402;;BTO:0000365;;EFO:0000851;;EHDAA:3830;;EHDAA:3937;;EMAPA:17178;;EMAPA:17193;;EMAPA:18661;;EMAPA:18852;;EV:0100073;;FMA:7206;;GAID:284;;galen:Duodenum;;http://upload.wikimedia.org/wikipedia/commons/b/b3/Tractus_intestinalis_duodenum.svg;;MA:0000338;;MAT:0000044;;MESH:A.03.492.411.620.270;;MIAA:0000044;;ncithesaurus:Duodenum;;OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA;;SCTID:181247007;;VHOG:0000052;;XAO:0000236
}}
}}

Latest revision as of 17:26, 12 September 2014

Name:duodenum
Namespace:FANTOM
Definition:"The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum]
Xrefs:
links:

AAO:0010402
BTO:0000365
EFO:0000851
EHDAA:3830
EHDAA:3937
EMAPA:17178
EMAPA:17193
EMAPA:18661
EMAPA:18852
EV:0100073
FMA:7206
GAID:284
galen:Duodenum
[1]
MA:0000338
MAT:0000044
MESH:A.03.492.411.620.270
MIAA:0000044
ncithesaurus:Duodenum
OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA
SCTID:181247007
VHOG:0000052

XAO:0000236
Synonyms: "proximal intestine" RELATED [BTO:0000365]
"upper intestine" RELATED [BTO:0000365]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004921(subdivision of digestive tract)
part_of:UBERON:0002108(small intestine)



Children

derives from:FF:0010063 (human duodenum - fetal sample)
develops from:UBERON:0003922 (pancreatic epithelial bud)
part of:UBERON:0004914 (duodenal papilla),FF:0010063 (human duodenum - fetal sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002114 (duodenum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.39e-66FFCP PHASE1:Hg19::chr7:98796685..98796688,-#_75c62016a3c8f3a32af131955696dd28p@chr7:98796685..98796688, -
2.39e-66FFCP PHASE1:Hg19::chr19:15923954..15923958,-#_75c62016a3c8f3a32af131955696dd28p@chr19:15923954..15923958, -
2.39e-66FFCP PHASE2:Hg19::chr19:49545691..49545692,+#_75c62016a3c8f3a32af131955696dd28p@chr19:49545691..49545692, +
2.39e-66FFCP PHASE2:Hg19::chr7:98796685..98796688,-#_75c62016a3c8f3a32af131955696dd28p@chr7:98796685..98796688, -
2.39e-66FFCP PHASE1:Hg19::chr7:99779265..99779276,+#_75c62016a3c8f3a32af131955696dd28p15@STAG3
2.39e-66FFCP PHASE1:Hg19::chr15:20093569..20093572,+#_75c62016a3c8f3a32af131955696dd28p@chr15:20093569..20093572, +
2.39e-66FFCP PHASE2:Hg19::chr15:20093569..20093572,+#_75c62016a3c8f3a32af131955696dd28p@chr15:20093569..20093572, +
2.39e-66FFCP PHASE2:Hg19::chr7:99779265..99779276,+#_75c62016a3c8f3a32af131955696dd28p15@STAG3
2.39e-66FFCP PHASE2:Hg19::chr19:15923954..15923958,-#_75c62016a3c8f3a32af131955696dd28p@chr19:15923954..15923958, -
2.39e-66FFCP PHASE1:Hg19::chr19:49545691..49545692,+#_75c62016a3c8f3a32af131955696dd28p@chr19:49545691..49545692, +
2.39e-66FFCP PHASE1:Hg19::chr7:98807901..98807908,-#_75c62016a3c8f3a32af131955696dd28p@chr7:98807901..98807908, -
2.39e-66FFCP PHASE2:Hg19::chr7:98807901..98807908,-#_75c62016a3c8f3a32af131955696dd28p@chr7:98807901..98807908, -
4.27e-34FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_7908796ddf21d6f42395ac3b8938756bp@chr3:139035972..139036016, -
4.27e-34FFCP PHASE1:Hg19::chrX:14748928..14748935,+#_7908796ddf21d6f42395ac3b8938756bp@chrX:14748928..14748935, +
4.27e-34FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_7908796ddf21d6f42395ac3b8938756bp@chr3:139035972..139036016, -
4.27e-34FFCP PHASE1:Hg19::chr7:98595103..98595105,-#_7908796ddf21d6f42395ac3b8938756bp@chr7:98595103..98595105, -
4.27e-34FFCP PHASE2:Hg19::chr19:49545646..49545652,+#_7908796ddf21d6f42395ac3b8938756bp@chr19:49545646..49545652, +
4.27e-34FFCP PHASE2:Hg19::chrX:14748928..14748935,+#_7908796ddf21d6f42395ac3b8938756bp@chrX:14748928..14748935, +
4.27e-34FFCP PHASE2:Hg19::chr7:98595103..98595105,-#_7908796ddf21d6f42395ac3b8938756bp@chr7:98595103..98595105, -
4.27e-34FFCP PHASE1:Hg19::chr19:49545646..49545652,+#_7908796ddf21d6f42395ac3b8938756bp@chr19:49545646..49545652, +
5.96e-34FFCP PHASE2:Hg19::chr7:142480038..142480045,+#_00a07033bab602d3d78334f8a1f069c9p2@TRY6
5.96e-34FFCP PHASE2:Hg19::chr20:61339609..61339610,+#_00a07033bab602d3d78334f8a1f069c9p@chr20:61339609..61339610, +
5.96e-34FFCP PHASE1:Hg19::chr7:100907782..100907785,+#_00a07033bab602d3d78334f8a1f069c9p@chr7:100907782..100907785, +
5.96e-34FFCP PHASE2:Hg19::chr15:42691624..42691627,+#_00a07033bab602d3d78334f8a1f069c9p@chr15:42691624..42691627, +
5.96e-34FFCP PHASE2:Hg19::chr10:118307868..118307873,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118307868..118307873, +
5.96e-34FFCP PHASE2:Hg19::chr3:148563293..148563303,+#_00a07033bab602d3d78334f8a1f069c9p@chr3:148563293..148563303, +
5.96e-34FFCP PHASE1:Hg19::chr2:133408105..133408109,-#_00a07033bab602d3d78334f8a1f069c9p@chr2:133408105..133408109, -
5.96e-34FFCP PHASE1:Hg19::chr3:148545430..148545465,+#_00a07033bab602d3d78334f8a1f069c9p8@CPB1
5.96e-34FFCP PHASE1:Hg19::chr16:67965041..67965045,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:67965041..67965045, -
5.96e-34FFCP PHASE1:Hg19::chr16:20322541..20322560,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20322541..20322560, -
5.96e-34FFCP PHASE1:Hg19::chr22:30653778..30653783,-#_00a07033bab602d3d78334f8a1f069c9p@chr22:30653778..30653783, -
5.96e-34FFCP PHASE1:Hg19::chr5:40415240..40415245,+#_00a07033bab602d3d78334f8a1f069c9p@chr5:40415240..40415245, +
5.96e-34FFCP PHASE2:Hg19::chr16:20322541..20322560,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20322541..20322560, -
5.96e-34FFCP PHASE1:Hg19::chr7:75910322..75910332,+#_00a07033bab602d3d78334f8a1f069c9p@chr7:75910322..75910332, +
5.96e-34FFCP PHASE2:Hg19::chr7:100907782..100907785,+#_00a07033bab602d3d78334f8a1f069c9p@chr7:100907782..100907785, +
5.96e-34FFCP PHASE1:Hg19::chr10:118307868..118307873,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118307868..118307873, +
5.96e-34FFCP PHASE1:Hg19::chr1:22307532..22307539,+#_00a07033bab602d3d78334f8a1f069c9p10@CELA3B
5.96e-34FFCP PHASE1:Hg19::chr1:220292419..220292423,-#_00a07033bab602d3d78334f8a1f069c9p@chr1:220292419..220292423, -
5.96e-34FFCP PHASE1:Hg19::chr3:148552307..148552332,+#_00a07033bab602d3d78334f8a1f069c9p@chr3:148552307..148552332, +
5.96e-34FFCP PHASE1:Hg19::chr16:20329594..20329605,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20329594..20329605, -
5.96e-34FFCP PHASE2:Hg19::chr16:20329594..20329605,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20329594..20329605, -
5.96e-34FFCP PHASE1:Hg19::chr7:130022025..130022028,-#_00a07033bab602d3d78334f8a1f069c9p@chr7:130022025..130022028, -
5.96e-34FFCP PHASE2:Hg19::chr3:148545430..148545465,+#_00a07033bab602d3d78334f8a1f069c9p8@CPB1
5.96e-34FFCP PHASE1:Hg19::chr20:8630056..8630060,+#_00a07033bab602d3d78334f8a1f069c9p6@PLCB1
5.96e-34FFCP PHASE1:Hg19::chr16:20321376..20321386,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20321376..20321386, -
5.96e-34FFCP PHASE2:Hg19::chr2:133408105..133408109,-#_00a07033bab602d3d78334f8a1f069c9p@chr2:133408105..133408109, -
5.96e-34FFCP PHASE2:Hg19::chr22:30653778..30653783,-#_00a07033bab602d3d78334f8a1f069c9p@chr22:30653778..30653783, -
5.96e-34FFCP PHASE1:Hg19::chr2:40184895..40184905,-#_00a07033bab602d3d78334f8a1f069c9p@chr2:40184895..40184905, -
5.96e-34FFCP PHASE2:Hg19::chr5:40415240..40415245,+#_00a07033bab602d3d78334f8a1f069c9p@chr5:40415240..40415245, +
5.96e-34FFCP PHASE2:Hg19::chr10:118307916..118307927,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118307916..118307927, +
5.96e-34FFCP PHASE2:Hg19::chr16:20321376..20321386,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20321376..20321386, -
5.96e-34FFCP PHASE2:Hg19::chr7:75910322..75910332,+#_00a07033bab602d3d78334f8a1f069c9p@chr7:75910322..75910332, +
5.96e-34FFCP PHASE1:Hg19::chr13:70035762..70035773,+#_00a07033bab602d3d78334f8a1f069c9p@chr13:70035762..70035773, +
5.96e-34FFCP PHASE2:Hg19::chr1:22307532..22307539,+#_00a07033bab602d3d78334f8a1f069c9p10@CELA3B
5.96e-34FFCP PHASE2:Hg19::chr11:8290633..8290665,-#_00a07033bab602d3d78334f8a1f069c9p11@LMO1
5.96e-34FFCP PHASE2:Hg19::chr10:26505179..26505186,+#_00a07033bab602d3d78334f8a1f069c9p13@GAD2
5.96e-34FFCP PHASE1:Hg19::chr2:50320593..50320596,-#_00a07033bab602d3d78334f8a1f069c9p@chr2:50320593..50320596, -
5.96e-34FFCP PHASE2:Hg19::chr1:220292419..220292423,-#_00a07033bab602d3d78334f8a1f069c9p@chr1:220292419..220292423, -
5.96e-34FFCP PHASE2:Hg19::chr13:70035762..70035773,+#_00a07033bab602d3d78334f8a1f069c9p@chr13:70035762..70035773, +
5.96e-34FFCP PHASE1:Hg19::chr6:39290407..39290416,-#_00a07033bab602d3d78334f8a1f069c9p5@KCNK16
5.96e-34FFCP PHASE2:Hg19::chr3:148552307..148552332,+#_00a07033bab602d3d78334f8a1f069c9p@chr3:148552307..148552332, +
5.96e-34FFCP PHASE1:Hg19::chr3:148545533..148545534,+#_00a07033bab602d3d78334f8a1f069c9p10@CPB1
5.96e-34FFCP PHASE2:Hg19::chr7:130022025..130022028,-#_00a07033bab602d3d78334f8a1f069c9p@chr7:130022025..130022028, -
5.96e-34FFCP PHASE2:Hg19::chr17:26818577..26818591,+#_00a07033bab602d3d78334f8a1f069c9p@chr17:26818577..26818591, +
5.96e-34FFCP PHASE2:Hg19::chr20:8630056..8630060,+#_00a07033bab602d3d78334f8a1f069c9p6@PLCB1
5.96e-34FFCP PHASE1:Hg19::chr16:20319465..20319474,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20319465..20319474, -
5.96e-34FFCP PHASE2:Hg19::chr10:118314717..118314725,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118314717..118314725, +
5.96e-34FFCP PHASE1:Hg19::chr1:15653436..15653448,+#_00a07033bab602d3d78334f8a1f069c9p12@FHAD1
5.96e-34FFCP PHASE2:Hg19::chr1:22310762..22310769,+#_00a07033bab602d3d78334f8a1f069c9p9@CELA3B
5.96e-34FFCP PHASE1:Hg19::chr10:118307916..118307927,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118307916..118307927, +
5.96e-34FFCP PHASE1:Hg19::chr4:174456011..174456013,+#_00a07033bab602d3d78334f8a1f069c9p@chr4:174456011..174456013, +
5.96e-34FFCP PHASE2:Hg19::chr16:20319465..20319474,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20319465..20319474, -
5.96e-34FFCP PHASE2:Hg19::chr2:40184895..40184905,-#_00a07033bab602d3d78334f8a1f069c9p@chr2:40184895..40184905, -
5.96e-34FFCP PHASE2:Hg19::chr5:112214095..112214109,-#_00a07033bab602d3d78334f8a1f069c9p@chr5:112214095..112214109, -
5.96e-34FFCP PHASE1:Hg19::chr14:24162221..24162248,+#_00a07033bab602d3d78334f8a1f069c9p@chr14:24162221..24162248, +
5.96e-34FFCP PHASE1:Hg19::chr3:148552336..148552342,+#_00a07033bab602d3d78334f8a1f069c9p@chr3:148552336..148552342, +
5.96e-34FFCP PHASE1:Hg19::chr1:22310762..22310769,+#_00a07033bab602d3d78334f8a1f069c9p9@CELA3B
5.96e-34FFCP PHASE1:Hg19::chr16:20329655..20329664,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20329655..20329664, -
5.96e-34FFCP PHASE2:Hg19::chr16:20329655..20329664,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20329655..20329664, -
5.96e-34FFCP PHASE2:Hg19::chr2:50320593..50320596,-#_00a07033bab602d3d78334f8a1f069c9p@chr2:50320593..50320596, -
5.96e-34FFCP PHASE1:Hg19::chr10:26505179..26505186,+#_00a07033bab602d3d78334f8a1f069c9p13@GAD2
5.96e-34FFCP PHASE2:Hg19::chr6:39290407..39290416,-#_00a07033bab602d3d78334f8a1f069c9p5@KCNK16
5.96e-34FFCP PHASE2:Hg19::chr3:148545533..148545534,+#_00a07033bab602d3d78334f8a1f069c9p10@CPB1
5.96e-34FFCP PHASE2:Hg19::chr14:24162221..24162248,+#_00a07033bab602d3d78334f8a1f069c9p@chr14:24162221..24162248, +
5.96e-34FFCP PHASE2:Hg19::chr10:118315554..118315565,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118315554..118315565, +
5.96e-34FFCP PHASE1:Hg19::chr7:98870980..98870981,+#_00a07033bab602d3d78334f8a1f069c9p8@MYH16
5.96e-34FFCP PHASE1:Hg19::chr5:112214095..112214109,-#_00a07033bab602d3d78334f8a1f069c9p@chr5:112214095..112214109, -
5.96e-34FFCP PHASE2:Hg19::chr11:69867159..69867175,-#_00a07033bab602d3d78334f8a1f069c9p3@ENST00000528507
5.96e-34FFCP PHASE1:Hg19::chr7:142479959..142479966,+#_00a07033bab602d3d78334f8a1f069c9p4@TRY6
5.96e-34FFCP PHASE1:Hg19::chr10:118314717..118314725,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118314717..118314725, +
5.96e-34FFCP PHASE2:Hg19::chr10:118307937..118307947,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118307937..118307947, +
5.96e-34FFCP PHASE2:Hg19::chr10:124594497..124594500,-#_00a07033bab602d3d78334f8a1f069c9p@chr10:124594497..124594500, -
5.96e-34FFCP PHASE1:Hg19::chr8:107669952..107669963,+#_00a07033bab602d3d78334f8a1f069c9p34@OXR1
5.96e-34FFCP PHASE2:Hg19::chr1:15653436..15653448,+#_00a07033bab602d3d78334f8a1f069c9p12@FHAD1
5.96e-34FFCP PHASE2:Hg19::chr4:174456011..174456013,+#_00a07033bab602d3d78334f8a1f069c9p@chr4:174456011..174456013, +
5.96e-34FFCP PHASE1:Hg19::chr3:148558688..148558695,+#_00a07033bab602d3d78334f8a1f069c9p5@BC015104
5.96e-34FFCP PHASE1:Hg19::chr7:150037547..150037552,-#_00a07033bab602d3d78334f8a1f069c9p10@RARRES2
5.96e-34FFCP PHASE2:Hg19::chr3:148552336..148552342,+#_00a07033bab602d3d78334f8a1f069c9p@chr3:148552336..148552342, +
5.96e-34FFCP PHASE2:Hg19::chr7:98870980..98870981,+#_00a07033bab602d3d78334f8a1f069c9p8@MYH16
5.96e-34FFCP PHASE1:Hg19::chr10:118315554..118315565,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118315554..118315565, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002114&oldid=3277380"