UBERON:0002316: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_83929-MA_0001135 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002316 | |||
|is_a=UBERON:0011215 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=white matter | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001017 | |part_of=UBERON:0001017 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Multi-tissue structure comprised largely of myelinated axons.[TAO]" xsd:string | |||
|subset=uberon_slim;;vertebrate_core | |||
|synonym="substantia alba" RELATED LATIN [Wikipedia:White_matter];;"white matter of neuraxis" EXACT [FMA:83929];;"white substance" EXACT [] | |||
|union_of= | |||
|xref=AEO:0000139;;FMA:83929;;http://upload.wikimedia.org/wikipedia/commons/d/d7/Grey_matter_and_white_matter_-_very_high_mag.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png;;MA:0001135;;ncithesaurus:White_Matter;;NIF_GrossAnatomy:Class_2;;OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA;;TAO:0000145;;TAO:0002142;;TAO:0002143;;ZFA:0001682 | |||
}} | }} | ||
Latest revision as of 17:29, 12 September 2014
| Name: | white matter | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter] | |
| Xrefs: |
| |
| Synonyms: |
"substantia alba" RELATED LATIN [Wikipedia:White_matter] "white matter of neuraxis" EXACT [FMA:83929] "white substance" EXACT [] | |
| Comments: | This class was created automatically from a combination of ontologies | |
| Alt_id: | UBERON:FMA_83929-MA_0001135 | |
| Subset: |
uberon_slim vertebrate_core |
200px-Spinal_nerve.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0011215(central nervous system cell part cluster) |
|---|---|
| part_of: | UBERON:0001017(central nervous system) |
Children
| is a: | UBERON:0003544 (brain white matter) |
|---|---|
| part of: | UBERON:0007702 (tract of brain) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10042-101F6 (corpus callosum, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002316 (white matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Multi-tissue structure comprised largely of myelinated axons.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
