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{{UBERON
{{UBERON
|id=UBERON:0002428
|alt_id=UBERON:MA_0000688-MIAA_0000151
|name=limb bone
|namespace=
|def="A bone that is part of a limb [Obol]." [OBOL:automatic]
|xref=EFO:0000880;;EFO:0000945;;MAT:0000151;;MIAA:0000151;;ncithesaurus:Bone_of_the_Extremity
|is_a=UBERON:0002513;;UBERON:0004120;;UBERON:0004375;;UBERON:0010740
|synonym="bone of limb" EXACT [OBOL:automatic];;"free limb bone" EXACT [UBERON:cjm, UBERONREF:0000003]
|comment=AO notes: NCITA includes clavicle. MA:'limb bone' is actually a bone of limb or girdle // Note that the formal definition is very inclusive, and includes sesamoids
|comment=AO notes: NCITA includes clavicle. MA:'limb bone' is actually a bone of limb or girdle // Note that the formal definition is very inclusive, and includes sesamoids
|alt_id=UBERON:MA_0000688-MIAA_0000151
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bone that is part of a limb [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0010881
|develops_from=UBERON:0010881
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002428
|is_a=UBERON:0002513 ;;UBERON:0004375 ;;UBERON:0015061
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0002091;;UBERON:0002101
|name=limb bone
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002101;;UBERON:0004381
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="bone of limb" EXACT [OBOL:automatic];;"free limb bone" EXACT [UBERON:cjm, UBERONREF:0000003]
|union_of=
|xref=EFO:0000880;;EFO:0000945;;MAT:0000151;;MIAA:0000151;;ncithesaurus:Bone_of_the_Extremity
}}
}}

Latest revision as of 17:32, 12 September 2014

Name:limb bone
Namespace:FANTOM
Definition:"A bone that is part of a limb [Obol]." [OBOL:automatic]
Xrefs:
links:

EFO:0000880
EFO:0000945
MAT:0000151
MIAA:0000151

ncithesaurus:Bone_of_the_Extremity
Synonyms: "bone of limb" EXACT [OBOL:automatic]
"free limb bone" EXACT [UBERON:cjm, UBERONREF:0000003]
Comments:AO notes: NCITA includes clavicle. MA:'limb bone' is actually a bone of limb or girdle // Note that the formal definition is very inclusive, and includes sesamoids
Alt_id: UBERON:MA_0000688-MIAA_0000151

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002513(endochondral bone),UBERON:0004375(bone of free limb or fin),UBERON:0015061(limb endochondral element)
develops_from:UBERON:0010881(limb cartilage element)
part_of:UBERON:0002101(limb),UBERON:0004381(skeleton of limb)



Children

is a:UBERON:0003464 (hindlimb bone),UBERON:0003606 (limb long bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002428 (limb bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_6b914f1752389a452716f2dc2aa64de6p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_6b914f1752389a452716f2dc2aa64de6p26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_4b3a70556aaf108bdd6b84f5ee30fcd0p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_4b3a70556aaf108bdd6b84f5ee30fcd0p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_4b3a70556aaf108bdd6b84f5ee30fcd0p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_4b3a70556aaf108bdd6b84f5ee30fcd0p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_4b3a70556aaf108bdd6b84f5ee30fcd0p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_4b3a70556aaf108bdd6b84f5ee30fcd0p@chr8:75097542..75097549, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_7e781031c4401c9a645fa42e6cb89dabp@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_7e781031c4401c9a645fa42e6cb89dabp@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_6e4fff2082769cadc934a1cdbfa7a6eap@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_6e4fff2082769cadc934a1cdbfa7a6eap@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_81424880b6e7154b72cce0c27e7ae20ap@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_81424880b6e7154b72cce0c27e7ae20ap@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_81424880b6e7154b72cce0c27e7ae20ap@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_81424880b6e7154b72cce0c27e7ae20ap@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_81424880b6e7154b72cce0c27e7ae20ap@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_81424880b6e7154b72cce0c27e7ae20ap@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_81424880b6e7154b72cce0c27e7ae20ap@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_81424880b6e7154b72cce0c27e7ae20ap@chr11:67063327..67063335, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_fa262664c952bc42cc901ee03653005bp@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_fa262664c952bc42cc901ee03653005bp@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_23fcd27be1aef58220a1a5a3103caea2p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_23fcd27be1aef58220a1a5a3103caea2p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_36131a2a57da13640b856eaa7f6c3f26p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_36131a2a57da13640b856eaa7f6c3f26p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_fbec8f43b22e1f371532151a93fa3b83p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_fbec8f43b22e1f371532151a93fa3b83p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_316c8ce50d393d8def1fbd046026abd6p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_316c8ce50d393d8def1fbd046026abd6p5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_006ca76b99a81b897db9037dee3c6ccep2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_006ca76b99a81b897db9037dee3c6ccep2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_d760c078850abc92a7bac18ce02137cbp3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_d760c078850abc92a7bac18ce02137cbp3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_df31328948c81d2a8b03c91e7ce00a92p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_df31328948c81d2a8b03c91e7ce00a92p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_df31328948c81d2a8b03c91e7ce00a92p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_df31328948c81d2a8b03c91e7ce00a92p@chr1:166815111..166815121, -
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_2db033de9cbf1c7281d814a05278738bp4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_2db033de9cbf1c7281d814a05278738bp@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_2db033de9cbf1c7281d814a05278738bp@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_2db033de9cbf1c7281d814a05278738bp4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_4890f2c499749cb6cff4c3d3d4f28153p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_4890f2c499749cb6cff4c3d3d4f28153p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_71d314c7f415f27acc09589e22c0cedap@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_71d314c7f415f27acc09589e22c0cedap@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_71d314c7f415f27acc09589e22c0cedap@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_71d314c7f415f27acc09589e22c0cedap@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_4dd825b33f81688f1a9bd348d996629bp@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_4dd825b33f81688f1a9bd348d996629bp@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_239c816f2675feeabe6e55cd16b79276p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_239c816f2675feeabe6e55cd16b79276p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_239c816f2675feeabe6e55cd16b79276p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_239c816f2675feeabe6e55cd16b79276p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_5ae1f2d01e1b3a8c50eb7fbcaff73eeep@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_5ae1f2d01e1b3a8c50eb7fbcaff73eeep@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_84f37a654ca620b2605e950009e87d75p2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_84f37a654ca620b2605e950009e87d75p2@Myoz3
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_d57509211e1c6e1c0d3aa3bdd1875c81p2@Myh4
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_d57509211e1c6e1c0d3aa3bdd1875c81p2@Myh4
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_afcd807306984bb0bcf1ea163ac8e6c0p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_afcd807306984bb0bcf1ea163ac8e6c0p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_90bad6c13934500bc2156a2b7d8acda2p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_90bad6c13934500bc2156a2b7d8acda2p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_90bad6c13934500bc2156a2b7d8acda2p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_90bad6c13934500bc2156a2b7d8acda2p1@Msmp
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_84dce02ef6637a0c86340bf13cd081f0p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_84dce02ef6637a0c86340bf13cd081f0p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_84dce02ef6637a0c86340bf13cd081f0p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_84dce02ef6637a0c86340bf13cd081f0p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_d890dc053b842530871bc1facf821ad6p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_d890dc053b842530871bc1facf821ad6p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_4c2d89969bbf040657b00de1ae22471bp@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_4c2d89969bbf040657b00de1ae22471bp@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_9afe6015f5b1c94b9c5abf1af1b13e75p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_9afe6015f5b1c94b9c5abf1af1b13e75p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_37e64721bc9df4940a562b632ed0b849p1@Siglec15
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_37e64721bc9df4940a562b632ed0b849p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_0490cb81098340e2ba6f1a7709aeb29dp6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_0490cb81098340e2ba6f1a7709aeb29dp6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_2e801d430fd8815149cad1e40aeb864ap7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_2e801d430fd8815149cad1e40aeb864ap7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_c652ed96e6e64beaf3c456e910d91e7fp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_c652ed96e6e64beaf3c456e910d91e7fp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_c652ed96e6e64beaf3c456e910d91e7fp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_c652ed96e6e64beaf3c456e910d91e7fp@chr7:133592162..133592188, -
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_2a7f67133891359fa9c69440a6c550b8p4@Sgca
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_2a7f67133891359fa9c69440a6c550b8p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_8d3ff3c72d556216e46229e338d7161fp1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_8d3ff3c72d556216e46229e338d7161fp1@Mepe
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_d28b6346c2fa2136e09ae9a26c6f1d86p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_d28b6346c2fa2136e09ae9a26c6f1d86p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_d28b6346c2fa2136e09ae9a26c6f1d86p2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_d28b6346c2fa2136e09ae9a26c6f1d86p@chr12:81581216..81581231, +
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_d3b278bcd9ab5de9608bacfc2521f98ap5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_d3b278bcd9ab5de9608bacfc2521f98ap@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_d3b278bcd9ab5de9608bacfc2521f98ap@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_d3b278bcd9ab5de9608bacfc2521f98ap5@Col11a2
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_d59bc0ac3050836f8dfa6708aa6cec6cp@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_d59bc0ac3050836f8dfa6708aa6cec6cp2@Siglec15

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