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{{UBERON
{{UBERON
|id=UBERON:0002530
|alt_id=UBERON:MIAA_0000021
|name=gland
|namespace=
|def="A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland]
|xref=AAO:0000212;;AEO:0000096;;BTO:0000522;;EFO:0000797;;EHDAA2:0003096;;EHDAA:2161;;EHDAA:2181;;EHDAA:2967;;EHDAA:4475;;EHDAA:6522;;EMAPA:18425;;FMA:86294;;galen:Gland;;HAO:0000375;;http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray1026.png;;MAT:0000021;;MIAA:0000021;;ncithesaurus:Gland;;OpenCyc:Mx4rwP3vyJwpEbGdrcN5Y29ycA;;SCTID:134358001
|is_a=UBERON:0000062
|synonym="Druese" RELATED [BTO:0000522];;"glandula" RELATED LATIN [Wikipedia:Gland];;"glandula" RELATED [BTO:0000522]
|comment=none of the major model vertebrate ontologies have a class called gland. Is this class superfluous? Also GO says secretion by tissue.
|comment=none of the major model vertebrate ontologies have a class called gland. Is this class superfluous? Also GO says secretion by tissue.
|alt_id=UBERON:MIAA_0000021
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002530
|is_a=UBERON:0000062
|is_obsolete=
|located_in=
|located_in=
|name=gland
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="Druese" RELATED [BTO:0000522];;"glandula" RELATED LATIN [Wikipedia:Gland];;"glandula" RELATED [BTO:0000522]
|union_of=
|xref=AAO:0000212;;AEO:0000096;;BTO:0000522;;EFO:0000797;;EHDAA2:0003096;;EHDAA:2161;;EHDAA:2181;;EHDAA:2967;;EHDAA:4475;;EHDAA:6522;;EMAPA:18425;;FMA:86294;;galen:Gland;;HAO:0000375;;http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray1026.png;;MAT:0000021;;MIAA:0000021;;ncithesaurus:Gland;;OpenCyc:Mx4rwP3vyJwpEbGdrcN5Y29ycA;;SCTID:134358001
}}
}}

Latest revision as of 17:33, 12 September 2014

Name:gland
Namespace:FANTOM
Definition:"A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland]
Xrefs:
links:

AAO:0000212
AEO:0000096
BTO:0000522
EFO:0000797
EHDAA2:0003096
EHDAA:2161
EHDAA:2181
EHDAA:2967
EHDAA:4475
EHDAA:6522
EMAPA:18425
FMA:86294
galen:Gland
HAO:0000375
[ Gray1026.png Gray1026.png]
MAT:0000021
MIAA:0000021
ncithesaurus:Gland
OpenCyc:Mx4rwP3vyJwpEbGdrcN5Y29ycA

SCTID:134358001
Synonyms: "Druese" RELATED [BTO:0000522]
"glandula" RELATED LATIN [Wikipedia:Gland]
"glandula" RELATED [BTO:0000522]
Comments:none of the major model vertebrate ontologies have a class called gland. Is this class superfluous? Also GO says secretion by tissue.
Alt_id: UBERON:MIAA_0000021
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ)



Children

is a:UBERON:0002365 (exocrine gland),UBERON:0002368 (endocrine gland),UBERON:0003296 (gland of diencephalon),UBERON:0003297 (gland of integumental system),UBERON:0003408 (gland of gut),UBERON:0003937 (sex gland),UBERON:0005058 (hemolymphoid system gland)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002530 (gland), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.87e-27FFCP PHASE1:Hg19::chr17:7017634..7017649,-#_af320fad8bbbbc822eb3bc867c9416bcp7@ASGR2
3.87e-27FFCP PHASE2:Hg19::chr17:7017634..7017649,-#_af320fad8bbbbc822eb3bc867c9416bcp7@ASGR2
8.82e-27FFCP PHASE1:Hg19::chr8:144417558..144417572,-#_c3a9689906e1ca234aaedeb5ca13d00cp7@TOP1MT
8.82e-27FFCP PHASE2:Hg19::chr2:21233797..21233804,-#_c3a9689906e1ca234aaedeb5ca13d00cp58@APOB
8.82e-27FFCP PHASE1:Hg19::chr2:21233797..21233804,-#_c3a9689906e1ca234aaedeb5ca13d00cp58@APOB
8.82e-27FFCP PHASE2:Hg19::chr8:144417558..144417572,-#_c3a9689906e1ca234aaedeb5ca13d00cp7@TOP1MT
9.86e-27FFCP PHASE2:Hg19::chr6:64231600..64231615,+#_606d6e18c29e3305a22338515033ab8fp24@PTP4A1
9.86e-27FFCP PHASE1:Hg19::chr6:64231600..64231615,+#_606d6e18c29e3305a22338515033ab8fp24@PTP4A1
4.5e-26FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_1f708f1b0e963e885d48159e192c3cb4p5@NR1H4
4.5e-26FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_1f708f1b0e963e885d48159e192c3cb4p5@NR1H4
6.7e-26FFCP PHASE1:Hg19::chr6:8652489..8652515,+#_070e81cac69435d48e1040471b20a1d5p1@HULC
6.7e-26FFCP PHASE2:Hg19::chr6:8652489..8652515,+#_070e81cac69435d48e1040471b20a1d5p1@HULC
1.74e-25FFCP PHASE2:Hg19::chr12:100867653..100867677,+#_2e14f555ec76ea2bafb6405fde4bff88p2@NR1H4
1.74e-25FFCP PHASE1:Hg19::chr12:100867653..100867677,+#_2e14f555ec76ea2bafb6405fde4bff88p2@NR1H4
5.7e-25FFCP PHASE2:Hg19::chr1:161192171..161192185,-#_eba1d067b6f0657d9ab34643f572ef65p@chr1:161192171..161192185, -
5.7e-25FFCP PHASE1:Hg19::chr1:161192171..161192185,-#_eba1d067b6f0657d9ab34643f572ef65p@chr1:161192171..161192185, -
3.01e-24FFCP PHASE2:Hg19::chrX:153769426..153769436,+#_ccb45a0385fc4f77f132cb08d0300041p18@IKBKG
3.01e-24FFCP PHASE1:Hg19::chrX:153769426..153769436,+#_ccb45a0385fc4f77f132cb08d0300041p18@IKBKG
3.56e-24FFCP PHASE2:Hg19::chr10:7745167..7745178,+#_6308949328cc540603abfa3bf8480b9ap3@ITIH2
3.56e-24FFCP PHASE1:Hg19::chr10:7745167..7745178,+#_6308949328cc540603abfa3bf8480b9ap3@ITIH2
3.98e-24FFCP PHASE2:Hg19::chr18:60206766..60206778,+#_8b6ef6a557e4d819bb884c1a13bf8e6dp17@ZCCHC2
3.98e-24FFCP PHASE1:Hg19::chr18:60206766..60206778,+#_8b6ef6a557e4d819bb884c1a13bf8e6dp17@ZCCHC2
4.45e-24FFCP PHASE1:Hg19::chr2:97216132..97216143,+#_1f4e6c47acdce80fcf2f5896ffd87820p@chr2:97216132..97216143, +
4.45e-24FFCP PHASE2:Hg19::chr2:97216132..97216143,+#_1f4e6c47acdce80fcf2f5896ffd87820p@chr2:97216132..97216143, +
1.05e-23FFCP PHASE1:Hg19::chr2:21239379..21239390,-#_fd864e217277af619b56353c58f91eb6p@chr2:21239379..21239390, -
1.05e-23FFCP PHASE1:Hg19::chr20:10349456..10349475,-#_fd864e217277af619b56353c58f91eb6p1@ENST00000421143
1.05e-23FFCP PHASE2:Hg19::chr2:21258509..21258518,-#_fd864e217277af619b56353c58f91eb6p@chr2:21258509..21258518, -
1.05e-23FFCP PHASE2:Hg19::chr2:21239379..21239390,-#_fd864e217277af619b56353c58f91eb6p@chr2:21239379..21239390, -
1.05e-23FFCP PHASE2:Hg19::chr20:10349456..10349475,-#_fd864e217277af619b56353c58f91eb6p1@ENST00000421143
1.05e-23FFCP PHASE1:Hg19::chr2:21228233..21228242,-#_fd864e217277af619b56353c58f91eb6p56@APOB
1.05e-23FFCP PHASE2:Hg19::chr10:82049381..82049384,-#_fd864e217277af619b56353c58f91eb6p9@MAT1A
1.05e-23FFCP PHASE1:Hg19::chr20:22566089..22566097,-#_fd864e217277af619b56353c58f91eb6p6@FOXA2
1.05e-23FFCP PHASE1:Hg19::chr10:82049381..82049384,-#_fd864e217277af619b56353c58f91eb6p9@MAT1A
1.05e-23FFCP PHASE2:Hg19::chr20:22566089..22566097,-#_fd864e217277af619b56353c58f91eb6p6@FOXA2
1.05e-23FFCP PHASE2:Hg19::chr2:21228233..21228242,-#_fd864e217277af619b56353c58f91eb6p56@APOB
1.05e-23FFCP PHASE1:Hg19::chr2:21258509..21258518,-#_fd864e217277af619b56353c58f91eb6p@chr2:21258509..21258518, -
1.11e-23FFCP PHASE2:Hg19::chr14:94844853..94844862,-#_ea4a26807de787e18d368f67ad0cad15p35@SERPINA1
1.11e-23FFCP PHASE2:Hg19::chr1:230846000..230846009,-#_ea4a26807de787e18d368f67ad0cad15p@chr1:230846000..230846009, -
1.11e-23FFCP PHASE1:Hg19::chr14:94844853..94844862,-#_ea4a26807de787e18d368f67ad0cad15p35@SERPINA1
1.11e-23FFCP PHASE1:Hg19::chr1:230846000..230846009,-#_ea4a26807de787e18d368f67ad0cad15p@chr1:230846000..230846009, -
1.2e-23FFCP PHASE1:Hg19::chr2:21232865..21232870,-#_58249c8d7ebb9da5824d8da39aa8e680p10@BC172787
1.2e-23FFCP PHASE2:Hg19::chr2:21230675..21230682,-#_58249c8d7ebb9da5824d8da39aa8e680p51@APOB
1.2e-23FFCP PHASE2:Hg19::chr2:21231676..21231681,-#_58249c8d7ebb9da5824d8da39aa8e680p75@APOB
1.2e-23FFCP PHASE1:Hg19::chr2:21234502..21234510,-#_58249c8d7ebb9da5824d8da39aa8e680p43@APOB
1.2e-23FFCP PHASE1:Hg19::chr2:21256369..21256378,-#_58249c8d7ebb9da5824d8da39aa8e680p@chr2:21256369..21256378, -
1.2e-23FFCP PHASE1:Hg19::chr2:20793103..20793113,-#_58249c8d7ebb9da5824d8da39aa8e680p@chr2:20793103..20793113, -
1.2e-23FFCP PHASE2:Hg19::chr2:21232865..21232870,-#_58249c8d7ebb9da5824d8da39aa8e680p10@BC172787
1.2e-23FFCP PHASE1:Hg19::chr2:21231676..21231681,-#_58249c8d7ebb9da5824d8da39aa8e680p75@APOB
1.2e-23FFCP PHASE2:Hg19::chr10:7763609..7763619,+#_58249c8d7ebb9da5824d8da39aa8e680p@chr10:7763609..7763619, +
1.2e-23FFCP PHASE2:Hg19::chr2:21234502..21234510,-#_58249c8d7ebb9da5824d8da39aa8e680p43@APOB
1.2e-23FFCP PHASE1:Hg19::chr2:44066386..44066398,-#_58249c8d7ebb9da5824d8da39aa8e680p6@ABCG5
1.2e-23FFCP PHASE1:Hg19::chr12:57828432..57828442,+#_58249c8d7ebb9da5824d8da39aa8e680p7@INHBC
1.2e-23FFCP PHASE1:Hg19::chr17:7082861..7082882,-#_58249c8d7ebb9da5824d8da39aa8e680p9@ASGR1
1.2e-23FFCP PHASE2:Hg19::chr17:7082861..7082882,-#_58249c8d7ebb9da5824d8da39aa8e680p9@ASGR1
1.2e-23FFCP PHASE2:Hg19::chr12:57828432..57828442,+#_58249c8d7ebb9da5824d8da39aa8e680p7@INHBC
1.2e-23FFCP PHASE2:Hg19::chr2:44066386..44066398,-#_58249c8d7ebb9da5824d8da39aa8e680p6@ABCG5
1.2e-23FFCP PHASE1:Hg19::chr2:21230675..21230682,-#_58249c8d7ebb9da5824d8da39aa8e680p51@APOB
1.2e-23FFCP PHASE2:Hg19::chr2:21256369..21256378,-#_58249c8d7ebb9da5824d8da39aa8e680p@chr2:21256369..21256378, -
1.2e-23FFCP PHASE1:Hg19::chr10:7763609..7763619,+#_58249c8d7ebb9da5824d8da39aa8e680p@chr10:7763609..7763619, +
1.2e-23FFCP PHASE2:Hg19::chr2:20793103..20793113,-#_58249c8d7ebb9da5824d8da39aa8e680p@chr2:20793103..20793113, -
2.14e-23FFCP PHASE1:Mm9::chr16:45986558..45986587,-#_9b5e68aec0f450f1bc97ae4bc2418aacp@chr16:45986558..45986587, -
2.14e-23FFCP PHASE2:Mm9::chr16:45986558..45986587,-#_9b5e68aec0f450f1bc97ae4bc2418aacp@chr16:45986558..45986587, -
3.56e-23FFCP PHASE1:Hg19::chr18:60206744..60206765,+#_234f3180b556cc9a0eb0c3b0e4ced5cdp6@ZCCHC2
3.56e-23FFCP PHASE2:Hg19::chr18:60206744..60206765,+#_234f3180b556cc9a0eb0c3b0e4ced5cdp6@ZCCHC2
3.65e-23FFCP PHASE1:Hg19::chr1:161192149..161192162,-#_099820ead1436e9f951b57529a5b257ep@chr1:161192149..161192162, -
3.65e-23FFCP PHASE2:Hg19::chr1:161192149..161192162,-#_099820ead1436e9f951b57529a5b257ep@chr1:161192149..161192162, -
4.02e-23FFCP PHASE1:Hg19::chr10:101841398..101841415,-#_88ba25e4cf9cf636cb1c256686588df5p2@CPN1
4.02e-23FFCP PHASE2:Hg19::chr10:101841398..101841415,-#_88ba25e4cf9cf636cb1c256686588df5p2@CPN1
4.12e-23FFCP PHASE2:Hg19::chr17:6593378..6593379,-#_9d8549817f11eecadde25469febc51e6p@chr17:6593378..6593379, -
4.12e-23FFCP PHASE1:Hg19::chr17:6593378..6593379,-#_9d8549817f11eecadde25469febc51e6p@chr17:6593378..6593379, -
4.22e-23FFCP PHASE1:Hg19::chr10:101841588..101841632,-#_0f25354f914ee320682604b2c16ab471p1@CPN1
4.22e-23FFCP PHASE2:Hg19::chr10:101841588..101841632,-#_0f25354f914ee320682604b2c16ab471p1@CPN1
6.51e-23FFCP PHASE1:Hg19::chr22:37505474..37505478,-#_4461b32c0679fc56eca59be730f16fd9p3@TMPRSS6
6.51e-23FFCP PHASE2:Hg19::chr22:37505474..37505478,-#_4461b32c0679fc56eca59be730f16fd9p3@TMPRSS6
1.0e-22FFCP PHASE2:Hg19::chr3:47484661..47484686,-#_71e0a83eef97bd4e0b795078d0ee8af4p4@SCAP
1.0e-22FFCP PHASE1:Hg19::chr3:47484661..47484686,-#_71e0a83eef97bd4e0b795078d0ee8af4p4@SCAP
1.79e-22FFCP PHASE2:Hg19::chr13:44980101..44980132,-#_142473fab618578f24429789174713b2p1@uc001uzl.2
1.79e-22FFCP PHASE1:Hg19::chr13:44980101..44980132,-#_142473fab618578f24429789174713b2p1@uc001uzl.2
1.81e-22FFCP PHASE2:Mm9::chr8:131012371..131012382,-#_07d745eb379a869ec12534f6760629a7p2@uc009nzu.1
1.81e-22FFCP PHASE1:Mm9::chr8:131012371..131012382,-#_07d745eb379a869ec12534f6760629a7p2@uc009nzu.1
1.81e-22FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_07d745eb379a869ec12534f6760629a7p8@uc009bpa.1
1.81e-22FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_07d745eb379a869ec12534f6760629a7p8@uc009bpa.1
2.51e-22FFCP PHASE2:Mm9::chr7:121912281..121912295,+#_859926659753f6dd9f4b90775dd33308p6@Insc
2.51e-22FFCP PHASE1:Mm9::chr7:121912281..121912295,+#_859926659753f6dd9f4b90775dd33308p6@Insc
2.66e-22FFCP PHASE1:Mm9::chr5:90897694..90897705,+#_5954f1dff8c517119e2ec3862c8bbe28p@chr5:90897694..90897705, +
2.66e-22FFCP PHASE2:Mm9::chr5:90897694..90897705,+#_5954f1dff8c517119e2ec3862c8bbe28p@chr5:90897694..90897705, +
2.8e-22FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_d1fbd1cecd78929405d2c22feeadd477p4@uc009bpa.1
2.8e-22FFCP PHASE2:Mm9::chr4:137275159..137275168,+#_d1fbd1cecd78929405d2c22feeadd477p@chr4:137275159..137275168, +
2.8e-22FFCP PHASE1:Mm9::chr4:137275159..137275168,+#_d1fbd1cecd78929405d2c22feeadd477p@chr4:137275159..137275168, +
2.8e-22FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_d1fbd1cecd78929405d2c22feeadd477p4@uc009bpa.1
3.24e-22FFCP PHASE2:Mm9::chr19:25169885..25169900,+#_5f52a197801376908fc062e4b60d8b96p@chr19:25169885..25169900, +
3.24e-22FFCP PHASE1:Mm9::chr19:25169885..25169900,+#_5f52a197801376908fc062e4b60d8b96p@chr19:25169885..25169900, +
3.73e-22FFCP PHASE1:Hg19::chr17:7082560..7082572,-#_9b7333117ba8229eda08eca82be24378p4@ASGR1
3.73e-22FFCP PHASE2:Hg19::chr17:7082560..7082572,-#_9b7333117ba8229eda08eca82be24378p4@ASGR1
3.93e-22FFCP PHASE2:Hg19::chr10:72083665..72083701,-#_4157f72644e937d4062cb68004f9aa4ap2@LRRC20
3.93e-22FFCP PHASE1:Hg19::chr10:72083665..72083701,-#_4157f72644e937d4062cb68004f9aa4ap2@LRRC20
3.98e-22FFCP PHASE1:Mm9::chr3:151770161..151770165,-#_970fd2984144cd43016b2ee8b113b2f4p3@Gipc2
3.98e-22FFCP PHASE2:Mm9::chr3:151770161..151770165,-#_970fd2984144cd43016b2ee8b113b2f4p3@Gipc2
4.58e-22FFCP PHASE2:Hg19::chr9:116838918..116838930,-#_b0610d8dd1ab3f39b7b45f129f8cb928p@chr9:116838918..116838930, -
4.58e-22FFCP PHASE1:Hg19::chr1:11107289..11107304,-#_b0610d8dd1ab3f39b7b45f129f8cb928p1@MASP2

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