UBERON:0002680: Difference between revisions
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(Created page with "{{UBERON
|id=UBERON:0002680
|name=regional part of metencephalon
|namespace=
|def="A regional part of brain that is part of a metencephalon [Obol]." [OBOL:automatic]
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:NIF_GrossAnatomy_birnlex_1361-FMA_67942 | ||
|anatomical_img_id=FMA:67942 | |||
| | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A regional part of brain that is part of a metencephalon [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002680 | |||
|is_a=UBERON:0000477 ;;UBERON:0002616 ;;UBERON:0010314 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=regional part of metencephalon | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001895 | |part_of=UBERON:0001895 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym="anatomical structure of brain of epencephalon-2" EXACT [OBOL:automatic];;"anatomical structure of brain of metencephalon" EXACT [OBOL:automatic];;"biological structure of brain of epencephalon-2" EXACT [OBOL:automatic];;"biological structure of brain of metencephalon" EXACT [OBOL:automatic];;"brain anatomical structure of epencephalon-2" EXACT [OBOL:automatic];;"brain anatomical structure of metencephalon" EXACT [OBOL:automatic];;"brain biological structure of epencephalon-2" EXACT [OBOL:automatic];;"brain biological structure of metencephalon" EXACT [OBOL:automatic];;"epencephalon-2 anatomical structure of brain" EXACT [OBOL:automatic];;"epencephalon-2 biological structure of brain" EXACT [OBOL:automatic];;"epencephalon-2 brain anatomical structure" EXACT [OBOL:automatic];;"epencephalon-2 brain biological structure" EXACT [OBOL:automatic];;"epencephalon-2 neuraxis segment" EXACT [OBOL:automatic];;"epencephalon-2 regional part of brain" EXACT [OBOL:automatic];;"epencephalon-2 segment of brain" EXACT [OBOL:automatic];;"metencephalon anatomical structure of brain" EXACT [OBOL:automatic];;"metencephalon biological structure of brain" EXACT [OBOL:automatic];;"metencephalon brain anatomical structure" EXACT [OBOL:automatic];;"metencephalon brain biological structure" EXACT [OBOL:automatic];;"metencephalon neuraxis segment" EXACT [OBOL:automatic];;"metencephalon regional part of brain" EXACT [OBOL:automatic];;"metencephalon segment of brain" EXACT [OBOL:automatic];;"metencephalon subdivision" EXACT [FMA:67942];;"neuraxis segment of epencephalon-2" EXACT [OBOL:automatic];;"neuraxis segment of metencephalon" EXACT [OBOL:automatic];;"regional part of brain of epencephalon-2" EXACT [OBOL:automatic];;"regional part of brain of metencephalon" EXACT [OBOL:automatic];;"segment of brain of epencephalon-2" EXACT [OBOL:automatic];;"segment of brain of metencephalon" EXACT [OBOL:automatic];;"segment of metencephalon" EXACT [NIF_GrossAnatomy:birnlex_1361] | |||
|union_of= | |||
|xref=FMA:67942;;NIF_GrossAnatomy:birnlex_1361 | |||
}} | }} | ||
Latest revision as of 17:34, 12 September 2014
| Name: | regional part of metencephalon | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "A regional part of brain that is part of a metencephalon [Obol]." [OBOL:automatic] | |
| Xrefs: |
| |
| Synonyms: |
"anatomical structure of brain of epencephalon-2" EXACT [OBOL:automatic] "anatomical structure of brain of metencephalon" EXACT [OBOL:automatic] "biological structure of brain of epencephalon-2" EXACT [OBOL:automatic] "biological structure of brain of metencephalon" EXACT [OBOL:automatic] "brain anatomical structure of epencephalon-2" EXACT [OBOL:automatic] "brain anatomical structure of metencephalon" EXACT [OBOL:automatic] "brain biological structure of epencephalon-2" EXACT [OBOL:automatic] "brain biological structure of metencephalon" EXACT [OBOL:automatic] "epencephalon-2 anatomical structure of brain" EXACT [OBOL:automatic] "epencephalon-2 biological structure of brain" EXACT [OBOL:automatic] "epencephalon-2 brain anatomical structure" EXACT [OBOL:automatic] "epencephalon-2 brain biological structure" EXACT [OBOL:automatic] "epencephalon-2 neuraxis segment" EXACT [OBOL:automatic] "epencephalon-2 regional part of brain" EXACT [OBOL:automatic] "epencephalon-2 segment of brain" EXACT [OBOL:automatic] "metencephalon anatomical structure of brain" EXACT [OBOL:automatic] "metencephalon biological structure of brain" EXACT [OBOL:automatic] "metencephalon brain anatomical structure" EXACT [OBOL:automatic] "metencephalon brain biological structure" EXACT [OBOL:automatic] "metencephalon neuraxis segment" EXACT [OBOL:automatic] "metencephalon regional part of brain" EXACT [OBOL:automatic] "metencephalon segment of brain" EXACT [OBOL:automatic] "metencephalon subdivision" EXACT [FMA:67942] "neuraxis segment of epencephalon-2" EXACT [OBOL:automatic] "neuraxis segment of metencephalon" EXACT [OBOL:automatic] "regional part of brain of epencephalon-2" EXACT [OBOL:automatic] "regional part of brain of metencephalon" EXACT [OBOL:automatic] "segment of brain of epencephalon-2" EXACT [OBOL:automatic] "segment of brain of metencephalon" EXACT [OBOL:automatic] "segment of metencephalon" EXACT [NIF_GrossAnatomy:birnlex_1361] | |
| Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_1361-FMA_67942 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0002616(regional part of brain),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0001895(metencephalon) |
Children
| is a: | UBERON:0000988 (pons),UBERON:0002037 (cerebellum) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10033-101E6 (pons, adult, pool1)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
- 10121-102F4 (cerebellum)
... further results Mouse (Mus musculus)
- 10033-101E6 (pons, adult, pool1)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
- 10121-102F4 (cerebellum)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002680 (regional part of metencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
