Personal tools

UBERON:0003059: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003059
|alt_id=UBERON:XAO_0000057-ZFA_0000279
|name=presomitic mesoderm
|namespace=
|def="Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-961014-576'>Kimmel et al, 1995.</a>" [ZFIN:curator]
|xref=AAO:0011086;;EFO:0001982;;TAO:0000279;;VHOG:0000559;;XAO:0000057;;ZFA:0000279
|is_a=UBERON:0005423
|synonym="presumptive somite mesoderm" RELATED [];;"PSM" RELATED [];;"segmental plate" EXACT [];;"somitogenic mesoderm" RELATED [];;"unsegmented paraxial mesoderm" EXACT [UBERON:cjm]
|comment=
|comment=
|alt_id=UBERON:XAO_0000057-ZFA_0000279
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. <a href
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0007282
|develops_from=UBERON:0007282
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003059
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|name=presomitic mesoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003077
|part_of=UBERON:0003077
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO]" xsd:string
|is_obsolete=
|subset=
|preceded_by=
|synonym="presumptive somite mesoderm" RELATED [];;"PSM" RELATED [];;"segmental plate" EXACT [];;"somitogenic mesoderm" RELATED [];;"unsegmented paraxial mesoderm" EXACT [UBERON:cjm]
|union_of=
|xref=AAO:0011086;;EFO:0001982;;TAO:0000279;;VHOG:0000559;;XAO:0000057;;ZFA:0000279
}}
}}

Latest revision as of 17:35, 12 September 2014

Name:presomitic mesoderm
Namespace:FANTOM
Definition:"Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. <a href
Xrefs:
links:

AAO:0011086
EFO:0001982
TAO:0000279
VHOG:0000559
XAO:0000057

ZFA:0000279
Synonyms: "presumptive somite mesoderm" RELATED []
"PSM" RELATED []
"segmental plate" EXACT []
"somitogenic mesoderm" RELATED []
"unsegmented paraxial mesoderm" EXACT [UBERON:cjm]
Alt_id: UBERON:XAO_0000057-ZFA_0000279

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0007282(presumptive segmental plate)
part_of:UBERON:0003077(paraxial mesoderm)



Children

develops from:UBERON:0002329 (somite)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003059 (presomitic mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.