UBERON:0003103: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:XAO_0003041-ZFA_0000496 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003103 | |||
|is_a=UBERON:0000062 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=compound organ | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=organ_slim;;upper_level | ||
| | |synonym="organ" RELATED [] | ||
|union_of= | |||
|xref=AAO:0010015;;AEO:0000024;;BILA:0000024;;CARO:0000024;;EHDAA2:0003024;;HAO:0000024;;NIF_GrossAnatomy:birnlex_4;;TADS:0000598;;TAO:0000496;;TGMA:0001837;;XAO:0003041;;ZFA:0000496 | |||
}} | }} | ||
Latest revision as of 17:38, 12 September 2014
| Name: | compound organ | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024] | |
| Xrefs: |
| |
| Synonyms: | "organ" RELATED [] | |
| Alt_id: | UBERON:XAO_0003041-ZFA_0000496 | |
| Subset: |
organ_slim upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000062(organ) |
|---|
Children
| is a: | UBERON:0000489 (cavitated compound organ),UBERON:0001005 (respiratory airway),UBERON:0010056 (future tongue),UBERON:0015228 (circulatory organ) |
|---|---|
| part of: | UBERON:0000471 (compound organ component) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10016-101C7 (heart, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10046-101G1 (heart, fetal, pool1)
- 10050-101G5 (heart, adult, diseased post-infarction, donor1)
- 10051-101G6 (heart, adult, diseased, donor1)
- 10056-101H2 (spinal cord, fetal, donor1)
- 10058-101H4 (trachea, fetal, donor1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10016-101C7 (heart, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10046-101G1 (heart, fetal, pool1)
- 10050-101G5 (heart, adult, diseased post-infarction, donor1)
- 10051-101G6 (heart, adult, diseased, donor1)
- 10056-101H2 (spinal cord, fetal, donor1)
- 10058-101H4 (trachea, fetal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003103 (compound organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
