UBERON:0003135: Difference between revisions

Latest revision as of 17:38, 12 September 2014

Name:

male reproductive organ

Namespace:

FANTOM

Definition:

"A male organ involved in reproduction" [UBERON:xp]

Xrefs:

Expandlinks:

Synonyms:

"male organism reproductive organ" EXACT [OBOL:automatic]
"male organism reproductive structure" EXACT [OBOL:automatic]
"male organism reproductive system organ" EXACT [OBOL:automatic]
"male organism sex organ" EXACT [OBOL:automatic]
"male reproductive system organ" EXACT []
"male sex organ" EXACT []
"reproductive organ of male organism" EXACT [OBOL:automatic]
"reproductive structure of male organism" EXACT [OBOL:automatic]
"reproductive system organ of male organism" EXACT [OBOL:automatic]
"sex organ of male organism" EXACT [OBOL:automatic]

Subset:

organ_slim

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0003133(reproductive organ),UBERON:0014403(male anatomical structure)
part_of:	UBERON:0003101(male organism),UBERON:0000079(male reproductive system),UBERON:0003101(male organism)

Children

is a:	UBERON:0000473 (testis),UBERON:0004054 (internal male genitalia),UBERON:0008811 (intromittent organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

10026-101D8 (testis, adult, pool1)
10096-102C6 (testis, adult, pool2)
10196-103E7 (ductus deferens, adult)
10197-103E8 (epididymis, adult)
10200-103F2 (penis, adult)
10201-103F3 (seminal vesicle, adult)
10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)

... further results Mouse (Mus musculus)

10026-101D8 (testis, adult, pool1)
10096-102C6 (testis, adult, pool2)
10196-103E7 (ductus deferens, adult)
10197-103E8 (epididymis, adult)
10200-103F2 (penis, adult)
10201-103F3 (seminal vesicle, adult)
10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003135 (male reproductive organ), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
5.22e-107	FFCP PHASE1:Hg19::chr1:44584485..44584512,+	p2@KLF17
5.22e-107	FFCP PHASE2:Hg19::chr1:44584485..44584512,+	p2@KLF17
1.93e-89	FFCP PHASE2:Hg19::chr1:44584530..44584537,+	p6@KLF17
1.93e-89	FFCP PHASE1:Hg19::chr11:125658009..125658027,+	p1@PATE3
1.93e-89	FFCP PHASE1:Hg19::chr5:140053152..140053174,-	p1@DND1
1.93e-89	FFCP PHASE2:Hg19::chr8:24298531..24298551,+	p1@ADAM7
1.93e-89	FFCP PHASE2:Hg19::chr5:140053152..140053174,-	p1@DND1
1.93e-89	FFCP PHASE2:Hg19::chr11:125658009..125658027,+	p1@PATE3
1.93e-89	FFCP PHASE1:Hg19::chr1:44584530..44584537,+	p6@KLF17
1.93e-89	FFCP PHASE1:Hg19::chr8:24298531..24298551,+	p1@ADAM7
1.64e-80	FFCP PHASE2:Hg19::chr19:22469215..22469229,+	p2@ZNF729
1.64e-80	FFCP PHASE1:Hg19::chr19:22469215..22469229,+	p2@ZNF729
1.88e-80	FFCP PHASE1:Hg19::chr12:102133233..102133245,-	p1@SYCP3
1.88e-80	FFCP PHASE2:Hg19::chr12:102133233..102133245,-	p1@SYCP3
8.79e-75	FFCP PHASE1:Hg19::chr1:44584544..44584557,+	p4@KLF17
8.79e-75	FFCP PHASE2:Hg19::chr10:118083953..118083965,+	p1@C10orf96
8.79e-75	FFCP PHASE1:Hg19::chr10:118083953..118083965,+	p1@C10orf96
8.79e-75	FFCP PHASE2:Hg19::chr1:44584544..44584557,+	p4@KLF17
1.39e-74	FFCP PHASE2:Hg19::chr9:135232083..135232140,-	p@chr9:135232083..135232140, -
1.39e-74	FFCP PHASE1:Hg19::chr9:135232083..135232140,-	p@chr9:135232083..135232140, -
6.65e-72	FFCP PHASE1:Hg19::chr6:35748783..35748831,+	p1@C6orf127
6.65e-72	FFCP PHASE2:Hg19::chr11:107782394..107782402,+	p@chr11:107782394..107782402, +
6.65e-72	FFCP PHASE2:Hg19::chr1:38709054..38709062,+	p@chr1:38709054..38709062, +
6.65e-72	FFCP PHASE1:Hg19::chr8:133637642..133637653,-	p6@LRRC6
6.65e-72	FFCP PHASE2:Hg19::chr1:24239991..24240012,-	p6@CNR2
6.65e-72	FFCP PHASE2:Hg19::chr14:21236500..21236512,+	p3@EDDM3B
6.65e-72	FFCP PHASE1:Hg19::chr12:32717031..32717041,+	p@chr12:32717031..32717041, +
6.65e-72	FFCP PHASE1:Hg19::chrX:15887107..15887122,-	p@chrX:15887107..15887122, -
6.65e-72	FFCP PHASE1:Hg19::chr2:233989556..233989568,+	p@chr2:233989556..233989568, +
6.65e-72	FFCP PHASE1:Hg19::chr1:44584568..44584585,+	p3@KLF17
6.65e-72	FFCP PHASE1:Hg19::chr19:40431300..40431312,-	p@chr19:40431300..40431312, -
6.65e-72	FFCP PHASE1:Hg19::chr1:38709054..38709062,+	p@chr1:38709054..38709062, +
6.65e-72	FFCP PHASE2:Hg19::chr19:51883856..51883866,-	p@chr19:51883856..51883866, -
6.65e-72	FFCP PHASE2:Hg19::chr1:92406327..92406341,+	p@chr1:92406327..92406341, +
6.65e-72	FFCP PHASE1:Hg19::chr12:8045030..8045044,+	p5@NANOGP1
6.65e-72	FFCP PHASE1:Hg19::chr2:71755221..71755234,+	p@chr2:71755221..71755234, +
6.65e-72	FFCP PHASE2:Hg19::chr2:233989556..233989568,+	p@chr2:233989556..233989568, +
6.65e-72	FFCP PHASE2:Hg19::chr12:32717043..32717051,+	p@chr12:32717043..32717051, +
6.65e-72	FFCP PHASE2:Hg19::chr20:44330670..44330703,+	p1@WFDC13
6.65e-72	FFCP PHASE1:Hg19::chr19:51883879..51883908,-	p@chr19:51883879..51883908, -
6.65e-72	FFCP PHASE1:Hg19::chr11:107782394..107782402,+	p@chr11:107782394..107782402, +
6.65e-72	FFCP PHASE1:Hg19::chr1:227034858..227034868,+	p@chr1:227034858..227034868, +
6.65e-72	FFCP PHASE2:Hg19::chr12:32717031..32717041,+	p@chr12:32717031..32717041, +
6.65e-72	FFCP PHASE2:Hg19::chr21:27478988..27478996,-	p@chr21:27478988..27478996, -
6.65e-72	FFCP PHASE2:Hg19::chr2:71755221..71755234,+	p@chr2:71755221..71755234, +
6.65e-72	FFCP PHASE1:Hg19::chr4:779349..779383,+	p@chr4:779349..779383, +
6.65e-72	FFCP PHASE2:Hg19::chr1:227034858..227034868,+	p@chr1:227034858..227034868, +
6.65e-72	FFCP PHASE2:Hg19::chr2:71755236..71755242,+	p@chr2:71755236..71755242, +
6.65e-72	FFCP PHASE2:Hg19::chr19:51883879..51883908,-	p@chr19:51883879..51883908, -
6.65e-72	FFCP PHASE2:Hg19::chr12:8045030..8045044,+	p5@NANOGP1
6.65e-72	FFCP PHASE2:Hg19::chr16:24506473..24506474,-	p2@BX538205
6.65e-72	FFCP PHASE2:Hg19::chr21:27478934..27478945,-	p@chr21:27478934..27478945, -
6.65e-72	FFCP PHASE1:Hg19::chr21:27478934..27478945,-	p@chr21:27478934..27478945, -
6.65e-72	FFCP PHASE2:Hg19::chr1:44584568..44584585,+	p3@KLF17
6.65e-72	FFCP PHASE2:Hg19::chr2:65786044..65786055,+	p@chr2:65786044..65786055, +
6.65e-72	FFCP PHASE1:Hg19::chr19:51883915..51883934,-	p@chr19:51883915..51883934, -
6.65e-72	FFCP PHASE1:Hg19::chr1:92406327..92406341,+	p@chr1:92406327..92406341, +
6.65e-72	FFCP PHASE2:Hg19::chr6:6032547..6032560,-	p@chr6:6032547..6032560, -
6.65e-72	FFCP PHASE2:Hg19::chr19:40431300..40431312,-	p@chr19:40431300..40431312, -
6.65e-72	FFCP PHASE2:Hg19::chr4:779349..779383,+	p@chr4:779349..779383, +
6.65e-72	FFCP PHASE1:Hg19::chr20:44330670..44330703,+	p1@WFDC13
6.65e-72	FFCP PHASE1:Hg19::chr15:33905298..33905312,+	p@chr15:33905298..33905312, +
6.65e-72	FFCP PHASE2:Hg19::chr2:71755206..71755213,+	p@chr2:71755206..71755213, +
6.65e-72	FFCP PHASE1:Hg19::chr19:51883856..51883866,-	p@chr19:51883856..51883866, -
6.65e-72	FFCP PHASE2:Hg19::chr6:35748783..35748831,+	p1@C6orf127
6.65e-72	FFCP PHASE2:Hg19::chrX:15887107..15887122,-	p@chrX:15887107..15887122, -
6.65e-72	FFCP PHASE1:Hg19::chr2:65786044..65786055,+	p@chr2:65786044..65786055, +
6.65e-72	FFCP PHASE2:Hg19::chr19:48494541..48494546,-	p@chr19:48494541..48494546, -
6.65e-72	FFCP PHASE1:Hg19::chr7:2309320..2309348,-	p@chr7:2309320..2309348, -
6.65e-72	FFCP PHASE2:Hg19::chr14:21214039..21214057,+	p1@EDDM3A
6.65e-72	FFCP PHASE2:Hg19::chr19:46003056..46003067,+	p11@PPM1N
6.65e-72	FFCP PHASE1:Hg19::chr19:40431284..40431296,-	p@chr19:40431284..40431296, -
6.65e-72	FFCP PHASE2:Hg19::chr8:133637624..133637635,-	p5@LRRC6
6.65e-72	FFCP PHASE1:Hg19::chr14:21236500..21236512,+	p3@EDDM3B
6.65e-72	FFCP PHASE2:Hg19::chr19:51883915..51883934,-	p@chr19:51883915..51883934, -
6.65e-72	FFCP PHASE1:Hg19::chr12:32717043..32717051,+	p@chr12:32717043..32717051, +
6.65e-72	FFCP PHASE1:Hg19::chr19:46003056..46003067,+	p11@PPM1N
6.65e-72	FFCP PHASE1:Hg19::chr6:6032547..6032560,-	p@chr6:6032547..6032560, -
6.65e-72	FFCP PHASE1:Hg19::chr2:71755236..71755242,+	p@chr2:71755236..71755242, +
6.65e-72	FFCP PHASE1:Hg19::chr17:42013628..42013633,+	p@chr17:42013628..42013633, +
6.65e-72	FFCP PHASE2:Hg19::chr19:40431284..40431296,-	p@chr19:40431284..40431296, -
6.65e-72	FFCP PHASE1:Hg19::chr21:27478988..27478996,-	p@chr21:27478988..27478996, -
6.65e-72	FFCP PHASE1:Hg19::chr19:48494541..48494546,-	p@chr19:48494541..48494546, -
6.65e-72	FFCP PHASE1:Hg19::chr8:133637624..133637635,-	p5@LRRC6
6.65e-72	FFCP PHASE1:Hg19::chr14:21214039..21214057,+	p1@EDDM3A
6.65e-72	FFCP PHASE2:Hg19::chr7:2309320..2309348,-	p@chr7:2309320..2309348, -
6.65e-72	FFCP PHASE1:Hg19::chr16:24506473..24506474,-	p2@BX538205
6.65e-72	FFCP PHASE2:Hg19::chr15:33905298..33905312,+	p@chr15:33905298..33905312, +
6.65e-72	FFCP PHASE2:Hg19::chr17:42013628..42013633,+	p@chr17:42013628..42013633, +
6.65e-72	FFCP PHASE1:Hg19::chr16:9069001..9069012,-	p@chr16:9069001..9069012, -
6.65e-72	FFCP PHASE2:Hg19::chr8:133637642..133637653,-	p6@LRRC6
6.65e-72	FFCP PHASE1:Hg19::chr1:24239991..24240012,-	p6@CNR2
6.65e-72	FFCP PHASE1:Hg19::chr2:71755206..71755213,+	p@chr2:71755206..71755213, +
6.65e-72	FFCP PHASE2:Hg19::chr16:9069001..9069012,-	p@chr16:9069001..9069012, -
2.21e-71	FFCP PHASE2:Hg19::chr17:12125154..12125159,+	p@chr17:12125154..12125159, +
2.21e-71	FFCP PHASE1:Hg19::chr17:12125154..12125159,+	p@chr17:12125154..12125159, +
2.63e-64	FFCP PHASE2:Hg19::chr6:49834166..49834204,-	p1@CRISP1
2.63e-64	FFCP PHASE2:Hg19::chr12:10183271..10183289,+	p1@CLEC9A
2.63e-64	FFCP PHASE1:Hg19::chr6:49834166..49834204,-	p1@CRISP1
2.63e-64	FFCP PHASE1:Hg19::chr12:10183271..10183289,+	p1@CLEC9A

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{UBERON
-|id=UBERON:0003135
+|alt_id=
-|name=male reproductive organ
-|namespace=
-|def="A male organ involved in reproduction" [UBERON:xp]
-|xref=EMAPA:17968;;MA:0000545
-|is_a=UBERON:0003133
-|synonym="male organism reproductive organ" EXACT [OBOL:automatic];;"male organism reproductive structure" EXACT [OBOL:automatic];;"male organism reproductive system organ" EXACT [OBOL:automatic];;"male organism sex organ" EXACT [OBOL:automatic];;"male reproductive system organ" EXACT [];;"male sex organ" EXACT [];;"reproductive organ of male organism" EXACT [OBOL:automatic];;"reproductive structure of male organism" EXACT [OBOL:automatic];;"reproductive system organ of male organism" EXACT [OBOL:automatic];;"sex organ of male organism" EXACT [OBOL:automatic]
 |comment=
-|alt_id=
-|disjoint_from=
-|union_of=
 |created_by=
-|obo_creation_date=
+|def="A male organ involved in reproduction" [UBERON:xp]
-|subset=organ_slim
-|adjacent_to=
 |derives_from=
 |develops_from=
+|disjoint_from=
 |has_quality=
+|id=UBERON:0003135
+|is_a=UBERON:0003133 ;;UBERON:0014403
+|is_obsolete=
 |located_in=
-|part_of=UBERON:0000079;;UBERON:0003101
+|name=male reproductive organ
+|namespace=FANTOM
+|obo_creation_date=
+|part_of=UBERON:0003101;;UBERON:0000079;;UBERON:0003101
+|preceded_by=
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
+|subset=organ_slim
+|synonym="male organism reproductive organ" EXACT [OBOL:automatic];;"male organism reproductive structure" EXACT [OBOL:automatic];;"male organism reproductive system organ" EXACT [OBOL:automatic];;"male organism sex organ" EXACT [OBOL:automatic];;"male reproductive system organ" EXACT [];;"male sex organ" EXACT [];;"reproductive organ of male organism" EXACT [OBOL:automatic];;"reproductive structure of male organism" EXACT [OBOL:automatic];;"reproductive system organ of male organism" EXACT [OBOL:automatic];;"sex organ of male organism" EXACT [OBOL:automatic]
+|union_of=
+|xref=EMAPA:17968;;MA:0000545
 }}

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UBERON:0003135: Difference between revisions

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Latest revision as of 17:38, 12 September 2014

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