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{{UBERON
{{UBERON
|id=UBERON:0003277
|alt_id=
|name=skeleton of upper jaw
|namespace=
|def="A subdivision of skeleton that is part of a upper jaw [Obol]." [OBOL:automatic]
|xref=AAO:0000622;;EHDAA2:0002128;;EHDAA:8041;;EMAPA:17927;;VHOG:0000429
|is_a=UBERON:0010314;;UBERON:0010912
|synonym="palatoquadrate arch subdivision of skeleton" EXACT [OBOL:automatic];;"subdivision of skeleton of palatoquadrate arch" EXACT [OBOL:automatic];;"subdivision of skeleton of upper jaw" EXACT [OBOL:automatic];;"upper jaw skeleton" EXACT [];;"upper jaw subdivision of skeleton" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A subdivision of skeleton that is part of a upper jaw [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003277
|is_a=UBERON:0004121 ;;UBERON:0010912
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=skeleton of upper jaw
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001708;;UBERON:0001709
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="palatoquadrate arch subdivision of skeleton" EXACT [OBOL:automatic];;"subdivision of skeleton of palatoquadrate arch" EXACT [OBOL:automatic];;"subdivision of skeleton of upper jaw" EXACT [OBOL:automatic];;"upper jaw skeleton" EXACT [];;"upper jaw subdivision of skeleton" EXACT [OBOL:automatic]
|union_of=
|xref=AAO:0000622;;EHDAA2:0002128;;EHDAA:8041;;EMAPA:17927;;VHOG:0000429
}}
}}

Latest revision as of 17:39, 12 September 2014

Name:skeleton of upper jaw
Namespace:FANTOM
Definition:"A subdivision of skeleton that is part of a upper jaw [Obol]." [OBOL:automatic]
Xrefs:
links:

AAO:0000622
EHDAA2:0002128
EHDAA:8041
EMAPA:17927

VHOG:0000429
Synonyms: "palatoquadrate arch subdivision of skeleton" EXACT [OBOL:automatic]
"subdivision of skeleton of palatoquadrate arch" EXACT [OBOL:automatic]
"subdivision of skeleton of upper jaw" EXACT [OBOL:automatic]
"upper jaw skeleton" EXACT []
"upper jaw subdivision of skeleton" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0010912(subdivision of skeleton)
part_of:UBERON:0001708(jaw skeleton),UBERON:0001709(upper jaw region)



Children

part of:UBERON:0002244 (premaxilla),UBERON:0002397 (maxilla),UBERON:0011597 (bone of upper jaw),UBERON:0011628 (early premaxilla)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003277 (skeleton of upper jaw), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_cbaa1d13eafa29667da1c6e3cd154e5bp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_cbaa1d13eafa29667da1c6e3cd154e5bp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_a146be49c311215fa9c4dc6b81299cf4p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_a146be49c311215fa9c4dc6b81299cf4p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_a146be49c311215fa9c4dc6b81299cf4p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_a146be49c311215fa9c4dc6b81299cf4p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_a146be49c311215fa9c4dc6b81299cf4p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_a146be49c311215fa9c4dc6b81299cf4p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_a146be49c311215fa9c4dc6b81299cf4p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_a146be49c311215fa9c4dc6b81299cf4p@chr8:57353655..57353662, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_fad06b614fd661003bb5f48e70cfcf19p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_fad06b614fd661003bb5f48e70cfcf19p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_fad06b614fd661003bb5f48e70cfcf19p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_fad06b614fd661003bb5f48e70cfcf19p14@MAB21L2
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_816518ab369e8f0c82e73d4e13e69900p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_816518ab369e8f0c82e73d4e13e69900p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_e1634a8e9f56bca52e9a6a67a8d943a9p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_e1634a8e9f56bca52e9a6a67a8d943a9p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_e1634a8e9f56bca52e9a6a67a8d943a9p9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_e1634a8e9f56bca52e9a6a67a8d943a9p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_e1634a8e9f56bca52e9a6a67a8d943a9p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_e1634a8e9f56bca52e9a6a67a8d943a9p@chr8:57354278..57354286, +
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_115d6cd611275bc7697821905087d99dp@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_115d6cd611275bc7697821905087d99dp@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_6feac340b3bada795a202f5ae5b27233p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_6feac340b3bada795a202f5ae5b27233p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_6feac340b3bada795a202f5ae5b27233p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_6feac340b3bada795a202f5ae5b27233p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_6feac340b3bada795a202f5ae5b27233p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_6feac340b3bada795a202f5ae5b27233p@chr5:75913767..75913778, -
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_753bb7e85422957fedc64f6d7779ee85p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_753bb7e85422957fedc64f6d7779ee85p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_753bb7e85422957fedc64f6d7779ee85p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_753bb7e85422957fedc64f6d7779ee85p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_92af1e3e53a4035cf3a869e1ab1907cap@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_92af1e3e53a4035cf3a869e1ab1907cap@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_92af1e3e53a4035cf3a869e1ab1907cap@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_92af1e3e53a4035cf3a869e1ab1907cap@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_92af1e3e53a4035cf3a869e1ab1907cap@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_92af1e3e53a4035cf3a869e1ab1907cap@chr8:57354143..57354152, +
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_bb3690e04f243e177559cc00b3c0a81fp12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_bb3690e04f243e177559cc00b3c0a81fp8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_bb3690e04f243e177559cc00b3c0a81fp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_bb3690e04f243e177559cc00b3c0a81fp8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_bb3690e04f243e177559cc00b3c0a81fp2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_bb3690e04f243e177559cc00b3c0a81fp12@FAM65C
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_372fea338743fca0b36b118d42f11f9ep@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_372fea338743fca0b36b118d42f11f9ep@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_372fea338743fca0b36b118d42f11f9ep@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_372fea338743fca0b36b118d42f11f9ep@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_9c609b69eb63f27d0d64bc35ff023c5ap@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_9c609b69eb63f27d0d64bc35ff023c5ap@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_9c609b69eb63f27d0d64bc35ff023c5ap@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_9c609b69eb63f27d0d64bc35ff023c5ap@chr6:46190219..46190230, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_6f096a2cd15b6d3e0e853b5874bee526p4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_6f096a2cd15b6d3e0e853b5874bee526p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_6f096a2cd15b6d3e0e853b5874bee526p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_6f096a2cd15b6d3e0e853b5874bee526p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_6f096a2cd15b6d3e0e853b5874bee526p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_6f096a2cd15b6d3e0e853b5874bee526p5@PENK
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_f7a4ed61d5105750030a9031b4a96570p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_f7a4ed61d5105750030a9031b4a96570p9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_3e243cd6acd85a53e6cfa7ef37e2ac8cp@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_3e243cd6acd85a53e6cfa7ef37e2ac8cp@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_0cb8ee18c512da9cd8f6ce8d11c6cb8bp@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_0cb8ee18c512da9cd8f6ce8d11c6cb8bp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_0cb8ee18c512da9cd8f6ce8d11c6cb8bp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_0cb8ee18c512da9cd8f6ce8d11c6cb8bp@chr8:57353676..57353688, -
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_a2fc91546f2f5f4b707db49fe969b38ep12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_a2fc91546f2f5f4b707db49fe969b38ep@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_a2fc91546f2f5f4b707db49fe969b38ep4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_a2fc91546f2f5f4b707db49fe969b38ep12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_a2fc91546f2f5f4b707db49fe969b38ep@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_a2fc91546f2f5f4b707db49fe969b38ep4@PLAC1
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_f52b53bb05588d3391c7536156be6819p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_f52b53bb05588d3391c7536156be6819p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_f52b53bb05588d3391c7536156be6819p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_f52b53bb05588d3391c7536156be6819p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_f52b53bb05588d3391c7536156be6819p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_f52b53bb05588d3391c7536156be6819p@chr8:57353982..57353991, -
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_1274431db3a485f4d6cfc0958f2dd382p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_1274431db3a485f4d6cfc0958f2dd382p7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_1274431db3a485f4d6cfc0958f2dd382p10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_1274431db3a485f4d6cfc0958f2dd382p7@SHOX2
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_804d0ef9b943d45108ee34b71ae56b4ap@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_804d0ef9b943d45108ee34b71ae56b4ap@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_804d0ef9b943d45108ee34b71ae56b4ap@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_804d0ef9b943d45108ee34b71ae56b4ap@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_804d0ef9b943d45108ee34b71ae56b4ap@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_804d0ef9b943d45108ee34b71ae56b4ap@chr17:79071218..79071221, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_cdade3261ccba8cdb0eb73ca59ec21c6p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_cdade3261ccba8cdb0eb73ca59ec21c6p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_8bddcb17192a487eac36b57a185d7755p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_8bddcb17192a487eac36b57a185d7755p18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_8bddcb17192a487eac36b57a185d7755p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_8bddcb17192a487eac36b57a185d7755p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_8bddcb17192a487eac36b57a185d7755p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_8bddcb17192a487eac36b57a185d7755p18@MEF2D
4.2e-29FFCP PHASE1:Hg19::chr13:36046127..36046134,+#_f140f42ae873d139639852eb5c0ec3b3p@chr13:36046127..36046134, +
4.2e-29FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_f140f42ae873d139639852eb5c0ec3b3p11@MAB21L2

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