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UBERON:0003860: Difference between revisions

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|located_in=
|located_in=
|name=hindlimb mesenchyme
|name=hindlimb mesenchyme
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0002103
|part_of=UBERON:0002103

Latest revision as of 17:41, 12 September 2014

Name:hindlimb mesenchyme
Namespace:FANTOM
Definition:"A mesenchyme that is part of a hindlimb [Obol]." [OBOL:automatic]
Xrefs:
links:
VHOG:0001074
Synonyms: "hind limb mesenchyme" EXACT [OBOL:automatic]
"inferior member mesenchyme" EXACT [OBOL:automatic]
"lower extremity mesenchyme" EXACT [OBOL:automatic]
"mesenchyme of hind limb" EXACT [OBOL:automatic]
"mesenchyme of hindlimb" EXACT [OBOL:automatic]
"mesenchyme of inferior member" EXACT [OBOL:automatic]
"mesenchyme of lower extremity" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0009749(limb mesenchyme)
part_of:UBERON:0002103(hindlimb)



Children

is a:UBERON:0003321 (mesenchyme of knee),UBERON:0005254 (upper leg mesenchyme),UBERON:0010886 (hindlimb bone pre-cartilage condensation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003860 (hindlimb mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data