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{{UBERON
{{UBERON
|id=UBERON:0004111
|name=anatomical conduit
|namespace=
|def="any opening in the body." [Wikipedia:Foramen]
|xref=AEO:0000080;;EHDAA2:0003080;;FMA:242873
|is_a=UBERON:0000477
|synonym="foramen" NARROW [EHDAA2:0003080];;"foramina" NARROW PLURAL [UBERON:cjm]
|comment=note that FMA has both conduit and conduit space
|alt_id=
|alt_id=
|disjoint_from=
|comment=note that FMA has both conduit and conduit space. In EHDAA2 this is a surface feature
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="any opening in the body." [Wikipedia:Foramen]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004111
|is_a=UBERON:0000477
|is_obsolete=
|located_in=
|located_in=
|name=anatomical conduit
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="foramen" NARROW [EHDAA2:0003080];;"foramina" NARROW PLURAL [UBERON:cjm]
|union_of=
|xref=AEO:0000080;;EHDAA2:0003080;;FMA:242873
}}
}}

Latest revision as of 17:43, 12 September 2014

Name:anatomical conduit
Namespace:FANTOM
Definition:"any opening in the body." [Wikipedia:Foramen]
Xrefs:
links:

AEO:0000080
EHDAA2:0003080

FMA:242873
Synonyms: "foramen" NARROW [EHDAA2:0003080]
"foramina" NARROW PLURAL [UBERON:cjm]
Comments:note that FMA has both conduit and conduit space. In EHDAA2 this is a surface feature

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000477(anatomical cluster)



Children

is a:UBERON:0000025 (tube),UBERON:0000055 (vessel),UBERON:0000161 (orifice),UBERON:0004145 (outflow tract),UBERON:0005744 (cranial conduit),UBERON:0015787 (upper respiratory conduit)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004111 (anatomical conduit), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data