UBERON:0004457: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004457 | |||
|is_a=UBERON:0004458 ;;UBERON:0004923 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=cavity lining | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=MA:0002448 | |||
}} | }} | ||
Latest revision as of 17:46, 12 September 2014
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004458(body cavity or lining),UBERON:0004923(organ component layer) |
|---|
Children
| is a: | UBERON:0000042 (serous membrane) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10276-104E6
- 10304-104H7
- 10332-105B8
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11291-117A4 (Synoviocyte, donor1)
- 11329-117E6 (Preadipocyte - omental, donor2)
- 11368-117I9 (Synoviocyte, donor2)
- 11403-118D8 (Preadipocyte - omental, donor3)
- 11440-118H9 (Synoviocyte, donor3)
- 11468-119C1 (Preadipocyte - omental, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004457 (cavity lining), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.36e-86 | FFCP PHASE2:Mm9::chr19:45161527..45161539,+#_1463c13cb9cfa3c2fafc0bce57664aff | p@chr19:45161527..45161539, + |
| 1.36e-86 | FFCP PHASE1:Mm9::chr19:45161527..45161539,+#_1463c13cb9cfa3c2fafc0bce57664aff | p@chr19:45161527..45161539, + |
| 4.43e-82 | FFCP PHASE2:Hg19::chr18:20122740..20122747,+#_94e8106725886565d0211fbcca217245 | p@chr18:20122740..20122747, + |
| 4.43e-82 | FFCP PHASE1:Hg19::chr18:20122740..20122747,+#_94e8106725886565d0211fbcca217245 | p@chr18:20122740..20122747, + |
| 1.01e-74 | FFCP PHASE2:Mm9::chr19:45224323..45224368,+#_8b6bde8cbf71566f5fe6b350afb40dad | p@chr19:45224323..45224368, + |
| 1.01e-74 | FFCP PHASE1:Mm9::chr19:45224323..45224368,+#_8b6bde8cbf71566f5fe6b350afb40dad | p@chr19:45224323..45224368, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr13:108293519..108293533,-#_c5c60c064f6316d3e44971659f8cc47a | p@chr13:108293519..108293533, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr13:108293519..108293533,-#_c5c60c064f6316d3e44971659f8cc47a | p@chr13:108293519..108293533, - |
| 1.35e-65 | FFCP PHASE1:Mm9::chr19:42116119..42116133,+#_134a34dbd073d2f4a9aca10c1066f785 | p@chr19:42116119..42116133, + |
| 1.35e-65 | FFCP PHASE2:Mm9::chr19:42116119..42116133,+#_134a34dbd073d2f4a9aca10c1066f785 | p@chr19:42116119..42116133, + |
| 4.13e-51 | FFCP PHASE2:Hg19::chr15:39087815..39087824,-#_834c8502a6bece253f9f86bd1daf1c07 | p@chr15:39087815..39087824, - |
| 4.13e-51 | FFCP PHASE1:Hg19::chr15:39087815..39087824,-#_834c8502a6bece253f9f86bd1daf1c07 | p@chr15:39087815..39087824, - |
| 5.59e-50 | FFCP PHASE2:Hg19::chr7:73484112..73484119,+#_dce3ef3fb2cb304a427da717506f8cab | p43@ELN |
| 5.59e-50 | FFCP PHASE1:Hg19::chr7:73484112..73484119,+#_dce3ef3fb2cb304a427da717506f8cab | p43@ELN |
| 1.09e-46 | FFCP PHASE1:Mm9::chr19:45224993..45225027,-#_e8196928f5f6c92599dc60d0173edbb8 | p@chr19:45224993..45225027, - |
| 1.09e-46 | FFCP PHASE2:Mm9::chr19:45224993..45225027,-#_e8196928f5f6c92599dc60d0173edbb8 | p@chr19:45224993..45225027, - |
| 1.86e-46 | FFCP PHASE2:Mm9::chr2:124537273..124537278,-#_8ed8bb1cb747b201b03741c27d1b8922 | p@chr2:124537273..124537278, - |
| 1.86e-46 | FFCP PHASE1:Mm9::chr2:124537273..124537278,-#_8ed8bb1cb747b201b03741c27d1b8922 | p@chr2:124537273..124537278, - |
| 2.72e-42 | FFCP PHASE2:Hg19::chr19:18718172..18718197,+#_6a5fa077ee90392cb74cea08566d3379 | p@chr19:18718172..18718197, + |
| 2.72e-42 | FFCP PHASE1:Hg19::chr19:18718172..18718197,+#_6a5fa077ee90392cb74cea08566d3379 | p@chr19:18718172..18718197, + |
| 8.75e-42 | FFCP PHASE2:Hg19::chr19:18900805..18900820,-#_10504543273c173a0f5507eca6da0d25 | p@chr19:18900805..18900820, - |
| 8.75e-42 | FFCP PHASE1:Hg19::chr19:18900805..18900820,-#_10504543273c173a0f5507eca6da0d25 | p@chr19:18900805..18900820, - |
| 8.75e-42 | FFCP PHASE2:Hg19::chr19:18898355..18898369,+#_10504543273c173a0f5507eca6da0d25 | p@chr19:18898355..18898369, + |
| 8.75e-42 | FFCP PHASE1:Hg19::chr19:18898355..18898369,+#_10504543273c173a0f5507eca6da0d25 | p@chr19:18898355..18898369, + |
| 2.56e-41 | FFCP PHASE2:Hg19::chr19:18898324..18898353,+#_60a4859f3dbd5c216c70b47206cb7401 | p@chr19:18898324..18898353, + |
| 2.56e-41 | FFCP PHASE1:Hg19::chr19:18898324..18898353,+#_60a4859f3dbd5c216c70b47206cb7401 | p@chr19:18898324..18898353, + |
| 9.04e-41 | FFCP PHASE2:Hg19::chr7:37947092..37947121,+#_b52b471ff33ba55f5063a65e8779d8cd | p2@CU691333 |
| 9.04e-41 | FFCP PHASE1:Hg19::chr7:37947092..37947121,+#_b52b471ff33ba55f5063a65e8779d8cd | p2@CU691333 |
| 1.54e-40 | FFCP PHASE2:Hg19::chr7:37947182..37947207,-#_762562a144ee523a95cceeea209202e0 | p@chr7:37947182..37947207, - |
| 1.54e-40 | FFCP PHASE1:Hg19::chr7:37947182..37947207,-#_762562a144ee523a95cceeea209202e0 | p@chr7:37947182..37947207, - |
| 2.32e-40 | FFCP PHASE2:Hg19::chr12:8814772..8814786,-#_671d5c4e1ef9abd035aa5715318107d7 | p13@MFAP5 |
| 2.32e-40 | FFCP PHASE1:Hg19::chr12:8814772..8814786,-#_671d5c4e1ef9abd035aa5715318107d7 | p13@MFAP5 |
| 1.42e-39 | FFCP PHASE2:Hg19::chr19:18900031..18900054,+#_5170e2b2b4f5f7839021ff58e850be69 | p@chr19:18900031..18900054, + |
| 1.42e-39 | FFCP PHASE1:Hg19::chr19:18900031..18900054,+#_5170e2b2b4f5f7839021ff58e850be69 | p@chr19:18900031..18900054, + |
| 1.92e-39 | FFCP PHASE1:Mm9::chr10:24966689..24966692,-#_fb9138a84b603e47f27e888136bc9cb5 | p@chr10:24966689..24966692, - |
| 1.92e-39 | FFCP PHASE2:Mm9::chr10:24966689..24966692,-#_fb9138a84b603e47f27e888136bc9cb5 | p@chr10:24966689..24966692, - |
| 2.2e-39 | FFCP PHASE1:Hg19::chr19:18899114..18899135,-#_f8678239e8dc7f4abf054def97490998 | p@chr19:18899114..18899135, - |
| 2.2e-39 | FFCP PHASE2:Hg19::chr19:18899114..18899135,-#_f8678239e8dc7f4abf054def97490998 | p@chr19:18899114..18899135, - |
| 2.54e-39 | FFCP PHASE1:Hg19::chr19:18896512..18896527,-#_cc6718ff87a67f75489ecda35cbe36d3 | p@chr19:18896512..18896527, - |
| 2.54e-39 | FFCP PHASE2:Hg19::chr19:18896512..18896527,-#_cc6718ff87a67f75489ecda35cbe36d3 | p@chr19:18896512..18896527, - |
| 1.63e-38 | FFCP PHASE1:Hg19::chr15:81242954..81242966,+#_5983a6aa8b430e336b94a78b7d50987a | p@chr15:81242954..81242966, + |
| 1.63e-38 | FFCP PHASE2:Hg19::chr15:81242954..81242966,+#_5983a6aa8b430e336b94a78b7d50987a | p@chr15:81242954..81242966, + |
| 1.32e-37 | FFCP PHASE1:Hg19::chr4:112437251..112437278,+#_9dfb51d394f0b283a3871f6149a39bec | p@chr4:112437251..112437278, + |
| 1.32e-37 | FFCP PHASE2:Hg19::chr19:18893611..18893635,-#_9dfb51d394f0b283a3871f6149a39bec | p1@AK094919 |
| 1.32e-37 | FFCP PHASE2:Hg19::chr4:112437251..112437278,+#_9dfb51d394f0b283a3871f6149a39bec | p@chr4:112437251..112437278, + |
| 1.32e-37 | FFCP PHASE1:Hg19::chr19:18893611..18893635,-#_9dfb51d394f0b283a3871f6149a39bec | p1@AK094919 |
| 1.32e-37 | FFCP PHASE1:Hg19::chr15:81225699..81225710,+#_9dfb51d394f0b283a3871f6149a39bec | p26@KIAA1199 |
| 1.32e-37 | FFCP PHASE2:Hg19::chr15:81225699..81225710,+#_9dfb51d394f0b283a3871f6149a39bec | p26@KIAA1199 |
| 1.34e-37 | FFCP PHASE2:Hg19::chr19:18896642..18896656,-#_8d8ee6a5f2a63b6e1888050cd92375a1 | p@chr19:18896642..18896656, - |
| 1.34e-37 | FFCP PHASE1:Hg19::chr19:18896642..18896656,-#_8d8ee6a5f2a63b6e1888050cd92375a1 | p@chr19:18896642..18896656, - |
| 5.84e-37 | FFCP PHASE1:Hg19::chr19:18899991..18900007,-#_be0ed8e60d8d611a07308cca4372211c | p@chr19:18899991..18900007, - |
| 5.84e-37 | FFCP PHASE2:Hg19::chr19:18899991..18900007,-#_be0ed8e60d8d611a07308cca4372211c | p@chr19:18899991..18900007, - |
| 7.41e-37 | FFCP PHASE2:Hg19::chr19:18899076..18899101,-#_6ad611551cba57abbda6ff112b676f44 | p@chr19:18899076..18899101, - |
| 7.41e-37 | FFCP PHASE1:Hg19::chr19:18899076..18899101,-#_6ad611551cba57abbda6ff112b676f44 | p@chr19:18899076..18899101, - |
| 3.25e-36 | FFCP PHASE2:Hg19::chr19:18900836..18900848,-#_8a7c90f332d29de638ba5912eb0f588d | p@chr19:18900836..18900848, - |
| 3.25e-36 | FFCP PHASE1:Hg19::chr19:18900836..18900848,-#_8a7c90f332d29de638ba5912eb0f588d | p@chr19:18900836..18900848, - |
| 1.87e-35 | FFCP PHASE1:Hg19::chr19:18899504..18899530,-#_09e61280a368b2489a42ceadc8cd505f | p@chr19:18899504..18899530, - |
| 1.87e-35 | FFCP PHASE2:Hg19::chr19:18899504..18899530,-#_09e61280a368b2489a42ceadc8cd505f | p@chr19:18899504..18899530, - |
| 5.37e-35 | FFCP PHASE1:Hg19::chr3:13670704..13670708,+#_624cd3aff00642a31e932b0c2c0e1545 | p@chr3:13670704..13670708, + |
| 5.37e-35 | FFCP PHASE2:Hg19::chr3:13670704..13670708,+#_624cd3aff00642a31e932b0c2c0e1545 | p@chr3:13670704..13670708, + |
| 5.88e-35 | FFCP PHASE2:Hg19::chr19:18709357..18709369,-#_b370bbe6747fd6e758ceb50436b2046b | p@chr19:18709357..18709369, - |
| 5.88e-35 | FFCP PHASE1:Hg19::chr19:18709357..18709369,-#_b370bbe6747fd6e758ceb50436b2046b | p@chr19:18709357..18709369, - |
| 6.77e-35 | FFCP PHASE1:Hg19::chr7:37947202..37947228,+#_8116b3db06f8474ccbad01664a752667 | p1@CU691333 |
| 6.77e-35 | FFCP PHASE2:Hg19::chr7:37947202..37947228,+#_8116b3db06f8474ccbad01664a752667 | p1@CU691333 |
| 1.12e-34 | FFCP PHASE1:Hg19::chr10:105428550..105428555,-#_3636565a9ef0541a5e6bf2c32dbaa0d6 | p25@SH3PXD2A |
| 1.12e-34 | FFCP PHASE2:Hg19::chr10:105428550..105428555,-#_3636565a9ef0541a5e6bf2c32dbaa0d6 | p25@SH3PXD2A |
| 1.41e-34 | FFCP PHASE2:Hg19::chr19:18893717..18893745,+#_b4eed72892bad28333edf8719dc5e261 | p@chr19:18893717..18893745, + |
| 1.41e-34 | FFCP PHASE1:Hg19::chr19:18893717..18893745,+#_b4eed72892bad28333edf8719dc5e261 | p@chr19:18893717..18893745, + |
| 1.64e-34 | FFCP PHASE2:Hg19::chr19:18899247..18899272,-#_90364b0e5975ba77c02db494ba34bcf1 | p@chr19:18899247..18899272, - |
| 1.64e-34 | FFCP PHASE1:Hg19::chr19:18899247..18899272,-#_90364b0e5975ba77c02db494ba34bcf1 | p@chr19:18899247..18899272, - |
| 1.9e-34 | FFCP PHASE2:Hg19::chr15:81242191..81242201,+#_ab57679310288cdc4d4492187832cf38 | p19@KIAA1199 |
| 1.9e-34 | FFCP PHASE1:Hg19::chr15:81242191..81242201,+#_ab57679310288cdc4d4492187832cf38 | p19@KIAA1199 |
| 2.01e-34 | FFCP PHASE2:Hg19::chr19:18896862..18896874,-#_4442ed4610c97de86cdddf6478f3709c | p@chr19:18896862..18896874, - |
| 2.01e-34 | FFCP PHASE1:Hg19::chr19:18896862..18896874,-#_4442ed4610c97de86cdddf6478f3709c | p@chr19:18896862..18896874, - |
| 2.68e-34 | FFCP PHASE1:Hg19::chr15:26342114..26342124,+#_09d03936b2e609e262e00787df9546a9 | p@chr15:26342114..26342124, + |
| 2.68e-34 | FFCP PHASE2:Hg19::chr15:26342114..26342124,+#_09d03936b2e609e262e00787df9546a9 | p@chr15:26342114..26342124, + |
| 2.85e-34 | FFCP PHASE2:Hg19::chr19:18897375..18897390,-#_69e5891620f288de2c7c922a21e4b766 | p4@COMP |
| 2.85e-34 | FFCP PHASE1:Hg19::chr19:18897375..18897390,-#_69e5891620f288de2c7c922a21e4b766 | p4@COMP |
| 4.28e-34 | FFCP PHASE1:Mm9::chr14:47707200..47707205,+#_b430b1dc5d8f602919a2002eae8a6258 | p@chr14:47707200..47707205, + |
| 4.28e-34 | FFCP PHASE2:Mm9::chr14:47707200..47707205,+#_b430b1dc5d8f602919a2002eae8a6258 | p@chr14:47707200..47707205, + |
| 5.19e-34 | FFCP PHASE1:Mm9::chr4:59686875..59686885,+#_c1c79fd73b7ec3e08de5d33dce5889a8 | p@chr4:59686875..59686885, + |
| 5.19e-34 | FFCP PHASE2:Mm9::chr4:59686875..59686885,+#_c1c79fd73b7ec3e08de5d33dce5889a8 | p@chr4:59686875..59686885, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr21:28820911..28820933,-#_41213d343d7c06f742d5f485cbe87a8f | p1@ENST00000420186, p1@uc002ymh.2 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr11:56859584..56859589,-#_41213d343d7c06f742d5f485cbe87a8f | p@chr11:56859584..56859589, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr9:127269488..127269495,-#_41213d343d7c06f742d5f485cbe87a8f | p5@NR5A1 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr8:22424743..22424759,-#_41213d343d7c06f742d5f485cbe87a8f | p1@ENST00000517384 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr14:75904485..75904519,+#_41213d343d7c06f742d5f485cbe87a8f | p12@JDP2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr9:79894790..79894797,+#_41213d343d7c06f742d5f485cbe87a8f | p10@VPS13A |
| 5.98e-34 | FFCP PHASE2:Hg19::chr9:127269434..127269438,-#_41213d343d7c06f742d5f485cbe87a8f | p8@NR5A1 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr1:157811772..157811796,-#_41213d343d7c06f742d5f485cbe87a8f | p7@CD5L |
| 5.98e-34 | FFCP PHASE2:Hg19::chr11:1891326..1891337,-#_41213d343d7c06f742d5f485cbe87a8f | p@chr11:1891326..1891337, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr21:28820954..28820963,-#_41213d343d7c06f742d5f485cbe87a8f | p3@ENST00000420186, p3@uc002ymh.2 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr8:22424709..22424716,-#_41213d343d7c06f742d5f485cbe87a8f | p2@ENST00000517384 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr11:56859693..56859701,-#_41213d343d7c06f742d5f485cbe87a8f | p@chr11:56859693..56859701, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:98014908..98014919,-#_41213d343d7c06f742d5f485cbe87a8f | p@chr10:98014908..98014919, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr21:28820941..28820952,-#_41213d343d7c06f742d5f485cbe87a8f | p2@ENST00000420186, p2@uc002ymh.2 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr9:127260615..127260651,-#_41213d343d7c06f742d5f485cbe87a8f | p@chr9:127260615..127260651, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr8:47834174..47834213,+#_41213d343d7c06f742d5f485cbe87a8f | p1@ENST00000524012 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr11:56859603..56859606,-#_41213d343d7c06f742d5f485cbe87a8f | p@chr11:56859603..56859606, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr7:22259740..22259751,-#_41213d343d7c06f742d5f485cbe87a8f | p19@RAPGEF5 |
