UBERON:0004647: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004647 | |||
|is_a=UBERON:0000064 ;;UBERON:0004119 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=liver lobule | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001280 | |part_of=UBERON:0001280 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="hepatic lobule" EXACT [FMA:14471];;"lobulus hepaticus" EXACT [FMA:14471] | ||
|union_of= | |||
|xref=FMA:14471;;MA:0002494;;ncithesaurus:Hepatic_Lobule;;SCTID:362194004 | |||
}} | }} | ||
Latest revision as of 17:46, 12 September 2014
| Name: | liver lobule | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: |
"hepatic lobule" EXACT [FMA:14471] "lobulus hepaticus" EXACT [FMA:14471] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part),UBERON:0004119(endoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001280(liver parenchyma) |
Children
| part of: | UBERON:0001172 (hepatic acinus),UBERON:0001281 (hepatic sinusoid),UBERON:0001282 (intralobular bile duct) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10629-108H8
- 10630-108H9
- 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
- 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
- 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
- 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
- 11831-124G4
- 11832-124G5
- 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
... further results Mouse (Mus musculus)
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10629-108H8
- 10630-108H9
- 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
- 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
- 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
- 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
- 11831-124G4
- 11832-124G5
- 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004647 (liver lobule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.74e-88 | FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_21bc846de0d4754dec7b345e1a836463 | p2@ENST00000448698 |
| 9.74e-88 | FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_21bc846de0d4754dec7b345e1a836463 | p2@ENST00000448698 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr11:88890706..88890745, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chrX:166418658..166418683, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr18:39513150..39513152, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr15:32178407..32178408, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr17:48822294..48822295, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr17:28107053..28107062, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr17:24807620..24807650, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr15:82193340..82193343, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr2:133323630..133323631, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr18:39297570..39297573, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_d467f18b3a526e740a80ed85ff1ec551 | p8@Il3ra |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr2:11935531..11935538, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr17:35093377..35093381, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr8:11183699..11183703, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr12:86691575..86691580, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr8:3311867..3311873, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr13:113543694..113543702, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr6:48398664..48398684, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr18:35881716..35881727, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr13:96429295..96429302, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr4:43407825..43407830, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr12:74684893..74684910, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_d467f18b3a526e740a80ed85ff1ec551 | p8@Map3k8 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr8:11183699..11183703, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:53111093..53111095,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr5:53111093..53111095, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr18:47491114..47491123, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:117419958..117419964,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr10:117419958..117419964, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr17:35096519..35096524, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr8:86713876..86713879, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:66883923..66883955,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr1:66883923..66883955, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr15:82207617..82207621, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35096519..35096524,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr17:35096519..35096524, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr16:28911901..28911906, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:5840965..5840966,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr13:5840965..5840966, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:21389022..21389032,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr10:21389022..21389032, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113554186..113554192,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr13:113554186..113554192, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:12388232..12388237,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr17:12388232..12388237, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr8:127816016..127816021, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:85585949..85585969,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr10:85585949..85585969, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:111108947..111108951,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr8:111108947..111108951, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr17:34796428..34796430, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:121593688..121593695,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr3:121593688..121593695, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr5:64344878..64344887, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:107196799..107196814,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr11:107196799..107196814, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr12:100752983..100752984, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:100752983..100752984,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr12:100752983..100752984, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:126939557..126939562,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr4:126939557..126939562, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:91441074..91441080,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr6:91441074..91441080, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:51831254..51831256,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr6:51831254..51831256, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:104857794..104857802,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr3:104857794..104857802, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:86691530..86691535,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr12:86691530..86691535, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:48685851..48685860,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr11:48685851..48685860, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:115280630..115280662,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr11:115280630..115280662, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:90508949..90508955,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr15:90508949..90508955, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:114422970..114422985,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr5:114422970..114422985, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:60398371..60398393,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr18:60398371..60398393, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:124112234..124112240,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr5:124112234..124112240, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:107196799..107196814,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr11:107196799..107196814, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35093616..35093631,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr17:35093616..35093631, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr7:87919399..87919406, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:60279719..60279737,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr10:60279719..60279737, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:121593688..121593695,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr3:121593688..121593695, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:82207617..82207621,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr15:82207617..82207621, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:52781901..52781904,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr7:52781901..52781904, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:39513150..39513152,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr18:39513150..39513152, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35093616..35093631,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr17:35093616..35093631, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113550715..113550722,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr13:113550715..113550722, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:38831400..38831402,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr18:38831400..38831402, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113542610..113542614,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr13:113542610..113542614, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:137487112..137487117,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr4:137487112..137487117, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr10:93819538..93819549, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:44793802..44793835,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr18:44793802..44793835, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:90270007..90270012,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr3:90270007..90270012, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:96429602..96429605,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr13:96429602..96429605, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr17:24807620..24807650, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:54785454..54785456,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr11:54785454..54785456, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:89310639..89310641,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr8:89310639..89310641, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:104857794..104857802,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr3:104857794..104857802, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:8928284..8928331,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr14:8928284..8928331, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:85547242..85547252,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr16:85547242..85547252, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:59435855..59435878,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr15:59435855..59435878, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:81955014..81955018,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr12:81955014..81955018, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:85585991..85586025,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr10:85585991..85586025, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:85288471..85288502,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr12:85288471..85288502, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:96429295..96429302,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr13:96429295..96429302, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:8471698..8471701,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr10:8471698..8471701, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:48685851..48685860,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr11:48685851..48685860, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:47491114..47491123,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr18:47491114..47491123, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:30944451..30944485,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr16:30944451..30944485, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93499468..93499494,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr10:93499468..93499494, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:82209805..82209851,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr15:82209805..82209851, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:132405466..132405470,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr1:132405466..132405470, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:129407463..129407468,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr2:129407463..129407468, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:57687477..57687488,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr4:57687477..57687488, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr12:25364645..25364655, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr19:29573929..29573932,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr19:29573929..29573932, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:35900327..35900366,+#_d467f18b3a526e740a80ed85ff1ec551 | p@chr18:35900327..35900366, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:88237840..88237851,-#_d467f18b3a526e740a80ed85ff1ec551 | p@chr12:88237840..88237851, - |
