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{{UBERON
{{UBERON
|id=UBERON:0005056
|alt_id=
|name=external female genitalia
|namespace=
|def="An external reproductive organ that is part of a female reproductive system [Obol]." [OBOL:automatic]
|xref=BTO:0003100;;EMAPA:30984;;FMA:45649;;galen:FemaleExternalGenitalia;;SCTID:362234008
|is_a=UBERON:0003134;;UBERON:0004176
|synonym="external female genital organ" EXACT [BTO:0003100];;"external genitalia of female reproductive system" EXACT [OBOL:automatic];;"female external genitalia" EXACT [FMA:45649];;"organa genitalia feminina externa" RELATED [BTO:0003100]
|comment=
|comment=
|alt_id=
|disjoint_from=UBERON:0009196
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An external reproductive organ that is part of a female reproductive system [Obol]." [OBOL:automatic]
|subset=organ_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=UBERON:0009196
|has_quality=
|has_quality=
|id=UBERON:0005056
|is_a=UBERON:0003134 ;;UBERON:0004176
|is_obsolete=
|located_in=
|located_in=
|name=external female genitalia
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000474
|part_of=UBERON:0000474
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim
|preceded_by=
|synonym="external female genital organ" EXACT [BTO:0003100];;"external genitalia of female reproductive system" EXACT [OBOL:automatic];;"female external genitalia" EXACT [FMA:45649];;"organa genitalia feminina externa" RELATED [BTO:0003100]
|union_of=
|xref=BTO:0003100;;EMAPA:30984;;FMA:45649;;galen:FemaleExternalGenitalia;;SCTID:362234008
}}
}}

Latest revision as of 17:50, 12 September 2014

Name:external female genitalia
Namespace:FANTOM
Definition:"An external reproductive organ that is part of a female reproductive system [Obol]." [OBOL:automatic]
Xrefs:
links:

BTO:0003100
EMAPA:30984
FMA:45649
galen:FemaleExternalGenitalia

SCTID:362234008
Synonyms: "external female genital organ" EXACT [BTO:0003100]
"external genitalia of female reproductive system" EXACT [OBOL:automatic]
"female external genitalia" EXACT [FMA:45649]
"organa genitalia feminina externa" RELATED [BTO:0003100]
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003134(female reproductive organ),UBERON:0004176(external genitalia)
disjoint_from:UBERON:0009196(indifferent external genitalia)
part_of:UBERON:0000474(female reproductive system)



Children

part of:UBERON:0000997 (mammalian vulva)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005056 (external female genitalia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr5:84943573..84943591,-#_f81e6cbe66be9e8915ceef504ea464e0p@chr5:84943573..84943591, -
5.42e-195FFCP PHASE2:Hg19::chr7:55088621..55088630,+#_f81e6cbe66be9e8915ceef504ea464e0p@chr7:55088621..55088630, +
5.42e-195FFCP PHASE2:Hg19::chr11:69988499..69988503,-#_f81e6cbe66be9e8915ceef504ea464e0p@chr11:69988499..69988503, -
5.42e-195FFCP PHASE1:Hg19::chr9:135687993..135687996,+#_f81e6cbe66be9e8915ceef504ea464e0p@chr9:135687993..135687996, +
5.42e-195FFCP PHASE1:Hg19::chr6:43706592..43706595,-#_f81e6cbe66be9e8915ceef504ea464e0p@chr6:43706592..43706595, -
5.42e-195FFCP PHASE1:Hg19::chr11:69988499..69988503,-#_f81e6cbe66be9e8915ceef504ea464e0p@chr11:69988499..69988503, -
5.42e-195FFCP PHASE1:Hg19::chr5:84943573..84943591,-#_f81e6cbe66be9e8915ceef504ea464e0p@chr5:84943573..84943591, -
5.42e-195FFCP PHASE1:Hg19::chr17:39678082..39678085,-#_f81e6cbe66be9e8915ceef504ea464e0p15@KRT15
5.42e-195FFCP PHASE1:Hg19::chr19:51512580..51512608,-#_f81e6cbe66be9e8915ceef504ea464e0p@chr19:51512580..51512608, -
5.42e-195FFCP PHASE1:Hg19::chr7:55088621..55088630,+#_f81e6cbe66be9e8915ceef504ea464e0p@chr7:55088621..55088630, +
5.42e-195FFCP PHASE2:Hg19::chr4:23975557..23975561,-#_f81e6cbe66be9e8915ceef504ea464e0p@chr4:23975557..23975561, -
5.42e-195FFCP PHASE1:Hg19::chr2:72258505..72258535,+#_f81e6cbe66be9e8915ceef504ea464e0p@chr2:72258505..72258535, +
5.42e-195FFCP PHASE2:Hg19::chr19:51512580..51512608,-#_f81e6cbe66be9e8915ceef504ea464e0p@chr19:51512580..51512608, -
5.42e-195FFCP PHASE2:Hg19::chr17:39678082..39678085,-#_f81e6cbe66be9e8915ceef504ea464e0p15@KRT15
5.42e-195FFCP PHASE1:Hg19::chr4:23975557..23975561,-#_f81e6cbe66be9e8915ceef504ea464e0p@chr4:23975557..23975561, -
5.42e-195FFCP PHASE2:Hg19::chr6:43706592..43706595,-#_f81e6cbe66be9e8915ceef504ea464e0p@chr6:43706592..43706595, -
5.42e-195FFCP PHASE2:Hg19::chr9:135687993..135687996,+#_f81e6cbe66be9e8915ceef504ea464e0p@chr9:135687993..135687996, +
5.42e-195FFCP PHASE2:Hg19::chr2:72258505..72258535,+#_f81e6cbe66be9e8915ceef504ea464e0p@chr2:72258505..72258535, +
9.37e-99FFCP PHASE2:Hg19::chr1:209980124..209980125,+#_d51b1e7f3653db10439a09820b2c5487p@chr1:209980124..209980125, +
9.37e-99FFCP PHASE2:Hg19::chr4:24105215..24105219,-#_d51b1e7f3653db10439a09820b2c5487p@chr4:24105215..24105219, -
9.37e-99FFCP PHASE1:Hg19::chr4:24188430..24188435,-#_d51b1e7f3653db10439a09820b2c5487p@chr4:24188430..24188435, -
9.37e-99FFCP PHASE1:Hg19::chr1:222131869..222131874,+#_d51b1e7f3653db10439a09820b2c5487p@chr1:222131869..222131874, +
9.37e-99FFCP PHASE2:Hg19::chr4:24125531..24125534,-#_d51b1e7f3653db10439a09820b2c5487p@chr4:24125531..24125534, -
9.37e-99FFCP PHASE1:Hg19::chr4:24105215..24105219,-#_d51b1e7f3653db10439a09820b2c5487p@chr4:24105215..24105219, -
9.37e-99FFCP PHASE2:Hg19::chr1:222131869..222131874,+#_d51b1e7f3653db10439a09820b2c5487p@chr1:222131869..222131874, +
9.37e-99FFCP PHASE2:Hg19::chr4:24133915..24133919,-#_d51b1e7f3653db10439a09820b2c5487p@chr4:24133915..24133919, -
9.37e-99FFCP PHASE2:Hg19::chr4:24233822..24233825,-#_d51b1e7f3653db10439a09820b2c5487p@chr4:24233822..24233825, -
9.37e-99FFCP PHASE1:Hg19::chr4:24125531..24125534,-#_d51b1e7f3653db10439a09820b2c5487p@chr4:24125531..24125534, -
9.37e-99FFCP PHASE1:Hg19::chr1:209980124..209980125,+#_d51b1e7f3653db10439a09820b2c5487p@chr1:209980124..209980125, +
9.37e-99FFCP PHASE2:Hg19::chr4:24188430..24188435,-#_d51b1e7f3653db10439a09820b2c5487p@chr4:24188430..24188435, -
9.37e-99FFCP PHASE1:Hg19::chr4:24133915..24133919,-#_d51b1e7f3653db10439a09820b2c5487p@chr4:24133915..24133919, -
9.37e-99FFCP PHASE1:Hg19::chr4:24233822..24233825,-#_d51b1e7f3653db10439a09820b2c5487p@chr4:24233822..24233825, -
2.55e-98FFCP PHASE2:Hg19::chr7:55141834..55141838,-#_a732ba243517803d413724a7bde13490p@chr7:55141834..55141838, -
2.55e-98FFCP PHASE1:Hg19::chr7:55141834..55141838,-#_a732ba243517803d413724a7bde13490p@chr7:55141834..55141838, -
1.23e-66FFCP PHASE1:Hg19::chr4:23981805..23981809,-#_39480de0eb189fd01f108e6ff808bdb8p@chr4:23981805..23981809, -
1.23e-66FFCP PHASE2:Hg19::chr3:193809263..193809278,+#_39480de0eb189fd01f108e6ff808bdb8p1@ENST00000457815
1.23e-66FFCP PHASE1:Hg19::chr4:24100907..24100911,-#_39480de0eb189fd01f108e6ff808bdb8p@chr4:24100907..24100911, -
1.23e-66FFCP PHASE1:Hg19::chr3:193809263..193809278,+#_39480de0eb189fd01f108e6ff808bdb8p1@ENST00000457815
1.23e-66FFCP PHASE2:Hg19::chr4:23981805..23981809,-#_39480de0eb189fd01f108e6ff808bdb8p@chr4:23981805..23981809, -
1.23e-66FFCP PHASE2:Hg19::chr4:24100907..24100911,-#_39480de0eb189fd01f108e6ff808bdb8p@chr4:24100907..24100911, -
2.39e-66FFCP PHASE1:Hg19::chr6:159149368..159149371,-#_daeec47c689a1bb4e1205e674ca28f79p@chr6:159149368..159149371, -
2.39e-66FFCP PHASE2:Hg19::chr17:39675882..39675894,-#_daeec47c689a1bb4e1205e674ca28f79p@chr17:39675882..39675894, -
2.39e-66FFCP PHASE1:Hg19::chr1:23330592..23330593,-#_daeec47c689a1bb4e1205e674ca28f79p@chr1:23330592..23330593, -
2.39e-66FFCP PHASE1:Hg19::chr17:39675882..39675894,-#_daeec47c689a1bb4e1205e674ca28f79p@chr17:39675882..39675894, -
2.39e-66FFCP PHASE2:Hg19::chr6:159149368..159149371,-#_daeec47c689a1bb4e1205e674ca28f79p@chr6:159149368..159149371, -
2.39e-66FFCP PHASE2:Hg19::chr1:23330592..23330593,-#_daeec47c689a1bb4e1205e674ca28f79p@chr1:23330592..23330593, -
4.66e-66FFCP PHASE1:Hg19::chr18:61254400..61254410,+#_93e5f0171d9757f0998ad52545161a3cp8@SERPINB13
4.66e-66FFCP PHASE2:Hg19::chr18:61254400..61254410,+#_93e5f0171d9757f0998ad52545161a3cp8@SERPINB13
6.58e-50FFCP PHASE2:Hg19::chr20:46473115..46473124,-#_df8a06613f21273f3e246c2fd7f39d6ep@chr20:46473115..46473124, -
6.58e-50FFCP PHASE1:Hg19::chr7:154497207..154497243,-#_df8a06613f21273f3e246c2fd7f39d6ep@chr7:154497207..154497243, -
6.58e-50FFCP PHASE2:Hg19::chr16:3041330..3041336,+#_df8a06613f21273f3e246c2fd7f39d6ep@chr16:3041330..3041336, +
6.58e-50FFCP PHASE2:Hg19::chr7:98870934..98870947,+#_df8a06613f21273f3e246c2fd7f39d6ep4@MYH16
6.58e-50FFCP PHASE1:Hg19::chr1:209945709..209945715,-#_df8a06613f21273f3e246c2fd7f39d6ep@chr1:209945709..209945715, -
6.58e-50FFCP PHASE1:Hg19::chr16:3041330..3041336,+#_df8a06613f21273f3e246c2fd7f39d6ep@chr16:3041330..3041336, +
6.58e-50FFCP PHASE1:Hg19::chr1:27192983..27192986,+#_df8a06613f21273f3e246c2fd7f39d6ep@chr1:27192983..27192986, +
6.58e-50FFCP PHASE2:Hg19::chr7:98870948..98870967,+#_df8a06613f21273f3e246c2fd7f39d6ep3@MYH16
6.58e-50FFCP PHASE1:Hg19::chr7:98870934..98870947,+#_df8a06613f21273f3e246c2fd7f39d6ep4@MYH16
6.58e-50FFCP PHASE2:Hg19::chr1:209945709..209945715,-#_df8a06613f21273f3e246c2fd7f39d6ep@chr1:209945709..209945715, -
6.58e-50FFCP PHASE2:Hg19::chr7:154497207..154497243,-#_df8a06613f21273f3e246c2fd7f39d6ep@chr7:154497207..154497243, -
6.58e-50FFCP PHASE1:Hg19::chr20:46473115..46473124,-#_df8a06613f21273f3e246c2fd7f39d6ep@chr20:46473115..46473124, -
6.58e-50FFCP PHASE2:Hg19::chr1:27192983..27192986,+#_df8a06613f21273f3e246c2fd7f39d6ep@chr1:27192983..27192986, +
6.58e-50FFCP PHASE1:Hg19::chr7:98870948..98870967,+#_df8a06613f21273f3e246c2fd7f39d6ep3@MYH16
6.62e-41FFCP PHASE2:Hg19::chr18:61586483..61586487,+#_2b872c57f81ef31833c07a32482ee80ep@chr18:61586483..61586487, +
6.62e-41FFCP PHASE2:Hg19::chr6:47009992..47009993,-#_2b872c57f81ef31833c07a32482ee80ep4@GPR110
6.62e-41FFCP PHASE2:Hg19::chr15:92484587..92484596,+#_2b872c57f81ef31833c07a32482ee80ep14@SLCO3A1
6.62e-41FFCP PHASE1:Hg19::chr15:92484587..92484596,+#_2b872c57f81ef31833c07a32482ee80ep14@SLCO3A1
6.62e-41FFCP PHASE1:Hg19::chr18:61586483..61586487,+#_2b872c57f81ef31833c07a32482ee80ep@chr18:61586483..61586487, +
6.62e-41FFCP PHASE1:Hg19::chr6:47009992..47009993,-#_2b872c57f81ef31833c07a32482ee80ep4@GPR110
9.91e-41FFCP PHASE2:Hg19::chr7:55270422..55270434,+#_3d031bcef78a552a4c60387f67825b0cp@chr7:55270422..55270434, +
9.91e-41FFCP PHASE2:Hg19::chr7:55149426..55149432,+#_3d031bcef78a552a4c60387f67825b0cp@chr7:55149426..55149432, +
9.91e-41FFCP PHASE1:Hg19::chr7:55270422..55270434,+#_3d031bcef78a552a4c60387f67825b0cp@chr7:55270422..55270434, +
9.91e-41FFCP PHASE1:Hg19::chr7:55149426..55149432,+#_3d031bcef78a552a4c60387f67825b0cp@chr7:55149426..55149432, +
1.48e-40FFCP PHASE1:Hg19::chr7:4722965..4723005,-#_e373c24553d28f90d39f715a3ff321f1p@chr7:4722965..4723005, -
1.48e-40FFCP PHASE2:Hg19::chr17:39675950..39675974,-#_e373c24553d28f90d39f715a3ff321f1p@chr17:39675950..39675974, -
1.48e-40FFCP PHASE2:Hg19::chr8:143866652..143866665,-#_e373c24553d28f90d39f715a3ff321f1p@chr8:143866652..143866665, -
1.48e-40FFCP PHASE2:Hg19::chr7:4722965..4723005,-#_e373c24553d28f90d39f715a3ff321f1p@chr7:4722965..4723005, -
1.48e-40FFCP PHASE1:Hg19::chr8:143866652..143866665,-#_e373c24553d28f90d39f715a3ff321f1p@chr8:143866652..143866665, -
1.48e-40FFCP PHASE1:Hg19::chr17:39675950..39675974,-#_e373c24553d28f90d39f715a3ff321f1p@chr17:39675950..39675974, -
2.21e-40FFCP PHASE1:Hg19::chr3:50308296..50308307,+#_d05b88860c737c0e27b7a165c30fd276p9@SEMA3B
2.21e-40FFCP PHASE2:Hg19::chr15:101417937..101417955,+#_d05b88860c737c0e27b7a165c30fd276p8@ALDH1A3
2.21e-40FFCP PHASE2:Hg19::chr3:50308296..50308307,+#_d05b88860c737c0e27b7a165c30fd276p9@SEMA3B
2.21e-40FFCP PHASE1:Hg19::chr15:101417937..101417955,+#_d05b88860c737c0e27b7a165c30fd276p8@ALDH1A3
3.3e-40FFCP PHASE1:Hg19::chr2:165650899..165650926,-#_8796adab76a856c4b9ea97436a13c5efp@chr2:165650899..165650926, -
3.3e-40FFCP PHASE1:Hg19::chr17:2264983..2264992,+#_8796adab76a856c4b9ea97436a13c5efp@chr17:2264983..2264992, +
3.3e-40FFCP PHASE2:Hg19::chr2:165650899..165650926,-#_8796adab76a856c4b9ea97436a13c5efp@chr2:165650899..165650926, -
3.3e-40FFCP PHASE2:Hg19::chr17:2264983..2264992,+#_8796adab76a856c4b9ea97436a13c5efp@chr17:2264983..2264992, +
1.84e-34FFCP PHASE1:Hg19::chr7:55053540..55053550,+#_f9794cd09802409fb779d0e69c79108bp@chr7:55053540..55053550, +
1.84e-34FFCP PHASE2:Hg19::chr4:24208460..24208464,-#_f9794cd09802409fb779d0e69c79108bp@chr4:24208460..24208464, -
1.84e-34FFCP PHASE2:Hg19::chr8:143814432..143814436,-#_f9794cd09802409fb779d0e69c79108bp@chr8:143814432..143814436, -
1.84e-34FFCP PHASE2:Hg19::chr4:24232569..24232574,-#_f9794cd09802409fb779d0e69c79108bp@chr4:24232569..24232574, -
1.84e-34FFCP PHASE1:Hg19::chr4:24208460..24208464,-#_f9794cd09802409fb779d0e69c79108bp@chr4:24208460..24208464, -
1.84e-34FFCP PHASE1:Hg19::chr8:143814432..143814436,-#_f9794cd09802409fb779d0e69c79108bp@chr8:143814432..143814436, -
1.84e-34FFCP PHASE2:Hg19::chr7:55053540..55053550,+#_f9794cd09802409fb779d0e69c79108bp@chr7:55053540..55053550, +
1.84e-34FFCP PHASE1:Hg19::chr4:24232569..24232574,-#_f9794cd09802409fb779d0e69c79108bp@chr4:24232569..24232574, -
2.58e-34FFCP PHASE2:Hg19::chr2:173374596..173374600,+#_bf3e01f073a912ab9d8697fa8a2e7b2ep@chr2:173374596..173374600, +
2.58e-34FFCP PHASE1:Hg19::chr7:98822527..98822533,+#_bf3e01f073a912ab9d8697fa8a2e7b2ep@chr7:98822527..98822533, +
2.58e-34FFCP PHASE1:Hg19::chr2:173374596..173374600,+#_bf3e01f073a912ab9d8697fa8a2e7b2ep@chr2:173374596..173374600, +
2.58e-34FFCP PHASE2:Hg19::chr7:98822527..98822533,+#_bf3e01f073a912ab9d8697fa8a2e7b2ep@chr7:98822527..98822533, +
3.61e-34FFCP PHASE1:Hg19::chr1:183178134..183178138,+#_1afd1134413b18b96c7aa71c60bd1584p@chr1:183178134..183178138, +
3.61e-34FFCP PHASE2:Hg19::chr1:183178134..183178138,+#_1afd1134413b18b96c7aa71c60bd1584p@chr1:183178134..183178138, +

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