UBERON:0005382: Difference between revisions
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|located_in= | |located_in= | ||
|name=dorsal striatum | |name=dorsal striatum | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002435 | |part_of=UBERON:0002435 | ||
Latest revision as of 17:52, 12 September 2014
| Name: | dorsal striatum | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Those portions of the caudate nucleus and especially the putamen located generally superior to a plane representing the anterior commissure; also called the dorsal basal ganglia; may function in motor activities with cognitive origins." [BTO:0004701] | ||
| Xrefs: |
| ||
| Synonyms: |
"caudoputamen" RELATED [NIF_GrossAnatomy:nlx_anat_100312] "striatum dorsale" RELATED [BTO:0004701] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0011300(gray matter of telencephalon) |
|---|---|
| part_of: | UBERON:0002435(striatum) |
Children
| part of: | UBERON:0001873 (caudate nucleus),UBERON:0005383 (caudate-putamen) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10152-102I8 (putamen, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
- 10354-105E3 (caudate nucleus, newborn, donor10223)
- 10365-105F5 (putamen, newborn, donor10223)
- 10372-105G3 (putamen, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005382 (dorsal striatum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.79e-195 | FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_c0fba7cab22b79dbead4476a7b8546ef | p@chr18:54898506..54898515, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_c0fba7cab22b79dbead4476a7b8546ef | p@chr18:47967443..47967452, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_c0fba7cab22b79dbead4476a7b8546ef | p5@ENST00000514240 |
| 2.79e-195 | FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_c0fba7cab22b79dbead4476a7b8546ef | p@chr17:7271778..7271784, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_c0fba7cab22b79dbead4476a7b8546ef | p5@ENST00000514240 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_c0fba7cab22b79dbead4476a7b8546ef | p@chr17:7271778..7271784, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_c0fba7cab22b79dbead4476a7b8546ef | p@chr18:54898506..54898515, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_c0fba7cab22b79dbead4476a7b8546ef | p@chr18:47967443..47967452, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr22:28195426..28195433,-#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr22:28195426..28195433, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chrX:45984754..45984763,+#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chrX:45984754..45984763, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr12:6031299..6031315, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr7:131761558..131761590,-#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr7:131761558..131761590, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chrX:45984754..45984763,+#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chrX:45984754..45984763, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr22:28195426..28195433,-#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr22:28195426..28195433, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr13:112726433..112726446, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr12:6031299..6031315, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr7:131761558..131761590,-#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr7:131761558..131761590, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr18:47967428..47967437, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr13:112726433..112726446, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr2:152828264..152828299, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr1:31352916..31352926, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr2:152828264..152828299, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr1:31352916..31352926, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_cc4bb57ecade6a6e1a3369ca41dc97df | p@chr18:47967428..47967437, - |
| 5.41e-147 | FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_d97f0ae9d33e3230e6712b012294139a | p@chr8:19799565..19799589, - |
| 5.41e-147 | FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_d97f0ae9d33e3230e6712b012294139a | p@chr8:19799565..19799589, - |
| 5.41e-147 | FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_d97f0ae9d33e3230e6712b012294139a | p@chr14:78638610..78638621, + |
| 5.41e-147 | FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_d97f0ae9d33e3230e6712b012294139a | p@chr14:78638610..78638621, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr17:17642493..17642503,+#_81d6978beee91680efc3dc08f3c9544a | p@chr17:17642493..17642503, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr4:185115354..185115359,-#_81d6978beee91680efc3dc08f3c9544a | p@chr4:185115354..185115359, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr1:244945778..244945781,-#_81d6978beee91680efc3dc08f3c9544a | p@chr1:244945778..244945781, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr2:132589601..132589606,-#_81d6978beee91680efc3dc08f3c9544a | p2@ENST00000437330 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr6:145132482..145132485,+#_81d6978beee91680efc3dc08f3c9544a | p@chr6:145132482..145132485, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr15:26273479..26273488,+#_81d6978beee91680efc3dc08f3c9544a | p@chr15:26273479..26273488, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr4:185115354..185115359,-#_81d6978beee91680efc3dc08f3c9544a | p@chr4:185115354..185115359, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr3:11019677..11019690,-#_81d6978beee91680efc3dc08f3c9544a | p@chr3:11019677..11019690, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr17:17642516..17642523,+#_81d6978beee91680efc3dc08f3c9544a | p@chr17:17642516..17642523, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr15:26273479..26273488,+#_81d6978beee91680efc3dc08f3c9544a | p@chr15:26273479..26273488, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr4:185115370..185115380,-#_81d6978beee91680efc3dc08f3c9544a | p@chr4:185115370..185115380, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chrX:82763874..82763884,+#_81d6978beee91680efc3dc08f3c9544a | p@chrX:82763874..82763884, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr5:132607538..132607543,+#_81d6978beee91680efc3dc08f3c9544a | p@chr5:132607538..132607543, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr1:244945778..244945781,-#_81d6978beee91680efc3dc08f3c9544a | p@chr1:244945778..244945781, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr2:132589601..132589606,-#_81d6978beee91680efc3dc08f3c9544a | p2@ENST00000437330 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr6:145132482..145132485,+#_81d6978beee91680efc3dc08f3c9544a | p@chr6:145132482..145132485, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr10:26097547..26097552,+#_81d6978beee91680efc3dc08f3c9544a | p@chr10:26097547..26097552, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr4:185115370..185115380,-#_81d6978beee91680efc3dc08f3c9544a | p@chr4:185115370..185115380, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr17:17642493..17642503,+#_81d6978beee91680efc3dc08f3c9544a | p@chr17:17642493..17642503, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr9:85575924..85575932,+#_81d6978beee91680efc3dc08f3c9544a | p@chr9:85575924..85575932, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chrX:82763874..82763884,+#_81d6978beee91680efc3dc08f3c9544a | p@chrX:82763874..82763884, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr5:132607538..132607543,+#_81d6978beee91680efc3dc08f3c9544a | p@chr5:132607538..132607543, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr19:49016307..49016316,-#_81d6978beee91680efc3dc08f3c9544a | p@chr19:49016307..49016316, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr10:26097547..26097552,+#_81d6978beee91680efc3dc08f3c9544a | p@chr10:26097547..26097552, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr17:17642516..17642523,+#_81d6978beee91680efc3dc08f3c9544a | p@chr17:17642516..17642523, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr9:85575924..85575932,+#_81d6978beee91680efc3dc08f3c9544a | p@chr9:85575924..85575932, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr14:64884595..64884607,+#_81d6978beee91680efc3dc08f3c9544a | p@chr14:64884595..64884607, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr3:11019677..11019690,-#_81d6978beee91680efc3dc08f3c9544a | p@chr3:11019677..11019690, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr14:64884595..64884607,+#_81d6978beee91680efc3dc08f3c9544a | p@chr14:64884595..64884607, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr4:156417309..156417316,+#_81d6978beee91680efc3dc08f3c9544a | p@chr4:156417309..156417316, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr4:156417309..156417316,+#_81d6978beee91680efc3dc08f3c9544a | p@chr4:156417309..156417316, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr19:49016307..49016316,-#_81d6978beee91680efc3dc08f3c9544a | p@chr19:49016307..49016316, - |
| 2.33e-118 | FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_5aa33dcd6f770091d70267002c21573e | p@chr15:35546024..35546035, - |
| 2.33e-118 | FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_5aa33dcd6f770091d70267002c21573e | p@chr15:35546024..35546035, - |
| 2.33e-118 | FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_5aa33dcd6f770091d70267002c21573e | p@chr2:3853961..3853984, + |
| 2.33e-118 | FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_5aa33dcd6f770091d70267002c21573e | p@chr17:19390211..19390223, + |
| 2.33e-118 | FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_5aa33dcd6f770091d70267002c21573e | p@chr2:3853961..3853984, + |
| 2.33e-118 | FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_5aa33dcd6f770091d70267002c21573e | p@chr17:19390211..19390223, + |
| 3.48e-118 | FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_27be73be15ccc21bdfcec869244acaa5 | p@chr3:57807798..57807809, + |
| 3.48e-118 | FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_27be73be15ccc21bdfcec869244acaa5 | p@chr20:9496091..9496106, + |
| 3.48e-118 | FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_27be73be15ccc21bdfcec869244acaa5 | p2@BC051739 |
| 3.48e-118 | FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_27be73be15ccc21bdfcec869244acaa5 | p@chr20:9496091..9496106, + |
| 3.48e-118 | FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_27be73be15ccc21bdfcec869244acaa5 | p2@BC051739 |
| 3.48e-118 | FFCP PHASE1:Hg19::chr12:117513131..117513155,-#_27be73be15ccc21bdfcec869244acaa5 | p@chr12:117513131..117513155, - |
| 3.48e-118 | FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_27be73be15ccc21bdfcec869244acaa5 | p@chr10:97261874..97261887, - |
| 3.48e-118 | FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_27be73be15ccc21bdfcec869244acaa5 | p@chr10:97261874..97261887, - |
| 3.48e-118 | FFCP PHASE2:Hg19::chr12:117513131..117513155,-#_27be73be15ccc21bdfcec869244acaa5 | p@chr12:117513131..117513155, - |
| 3.48e-118 | FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_27be73be15ccc21bdfcec869244acaa5 | p@chr3:57807798..57807809, + |
| 7.78e-118 | FFCP PHASE2:Hg19::chr1:177134234..177134239,-#_e02b31f66eafaa3f492403b0418e06d2 | p14@ASTN1 |
| 7.78e-118 | FFCP PHASE2:Hg19::chr4:72101966..72101969,+#_e02b31f66eafaa3f492403b0418e06d2 | p21@SLC4A4 |
| 7.78e-118 | FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_e02b31f66eafaa3f492403b0418e06d2 | p6@SYNDIG1L |
| 7.78e-118 | FFCP PHASE1:Hg19::chr4:72101966..72101969,+#_e02b31f66eafaa3f492403b0418e06d2 | p21@SLC4A4 |
| 7.78e-118 | FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_e02b31f66eafaa3f492403b0418e06d2 | p6@SYNDIG1L |
| 7.78e-118 | FFCP PHASE1:Hg19::chr1:177134234..177134239,-#_e02b31f66eafaa3f492403b0418e06d2 | p14@ASTN1 |
| 1.16e-117 | FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_3f4fcd50357c8c098ac766558e5c64e8 | p23@KCNAB1 |
| 1.16e-117 | FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_3f4fcd50357c8c098ac766558e5c64e8 | p23@KCNAB1 |
| 4.06e-99 | FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_19f8967ae60b5a089020520bffad13b4 | p@chr19:1236637..1236645, - |
| 4.06e-99 | FFCP PHASE1:Hg19::chr2:212989626..212989648,-#_19f8967ae60b5a089020520bffad13b4 | p@chr2:212989626..212989648, - |
| 4.06e-99 | FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_19f8967ae60b5a089020520bffad13b4 | p1@ENST00000421878 |
| 4.06e-99 | FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_19f8967ae60b5a089020520bffad13b4 | p@chr11:26497871..26497889, + |
| 4.06e-99 | FFCP PHASE2:Hg19::chr2:212989626..212989648,-#_19f8967ae60b5a089020520bffad13b4 | p@chr2:212989626..212989648, - |
| 4.06e-99 | FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_19f8967ae60b5a089020520bffad13b4 | p1@ENST00000421878 |
| 4.06e-99 | FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_19f8967ae60b5a089020520bffad13b4 | p@chr19:1236637..1236645, - |
| 4.06e-99 | FFCP PHASE1:Hg19::chr5:121648127..121648167,-#_19f8967ae60b5a089020520bffad13b4 | p@chr5:121648127..121648167, - |
| 4.06e-99 | FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_19f8967ae60b5a089020520bffad13b4 | p@chr11:26497871..26497889, + |
| 4.06e-99 | FFCP PHASE2:Hg19::chr5:121648127..121648167,-#_19f8967ae60b5a089020520bffad13b4 | p@chr5:121648127..121648167, - |
| 5.69e-99 | FFCP PHASE2:Hg19::chr2:234227370..234227385,+#_94995734d31fb6a93861b3fac2ec023b | p@chr2:234227370..234227385, + |
| 5.69e-99 | FFCP PHASE2:Hg19::chr14:101123580..101123593,+#_94995734d31fb6a93861b3fac2ec023b | p1@LINC00523 |
| 5.69e-99 | FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_94995734d31fb6a93861b3fac2ec023b | p@chr10:97261901..97261919, - |
| 5.69e-99 | FFCP PHASE1:Hg19::chr14:101123580..101123593,+#_94995734d31fb6a93861b3fac2ec023b | p1@LINC00523 |
| 5.69e-99 | FFCP PHASE2:Hg19::chr3:63428975..63428978,+#_94995734d31fb6a93861b3fac2ec023b | p10@SYNPR |
| 5.69e-99 | FFCP PHASE1:Hg19::chr3:63428975..63428978,+#_94995734d31fb6a93861b3fac2ec023b | p10@SYNPR |
