UBERON:0005418: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=Genes: Tbx4 specifies hindlimbs. Wnt8c restricts Fgf10 in chick. | |comment=Genes: Tbx4 specifies hindlimbs. Wnt8c restricts Fgf10 in chick. | ||
|created_by= | |created_by= | ||
| | |def="A limb bud that develops into a hindlimb." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005418 | |||
|is_a=UBERON:0004347 ;;UBERON:0005420 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=hindlimb bud | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000154 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The bilateral thickening of the ectoderm in the region of the first noticeable at NF stage 47, and innervated by NF stage 51. The hind limb buds develop before the forelimb buds.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The bilateral thickening of the ectoderm in the region of the first noticeable at NF stage 47, and innervated by NF stage 51. The hind limb buds develop before the forelimb buds.[AAO]" xsd:string | ||
| | |subset= | ||
| | |synonym="hind limb bud" EXACT [XAO:0003066];;"leg bud" RELATED [];;"limb bud - hindlimb" RELATED [];;"posterior limb bud" EXACT [SCTID:346164003] | ||
|union_of= | |||
|xref=AAO:0010382;;EHDAA:2358;;EMAPA:16779;;MIAA:0000256;;RETIRED_EHDAA2:0003197;;SCTID:346164003;;XAO:0003066 | |||
}} | }} | ||
Latest revision as of 17:53, 12 September 2014
| Name: | hindlimb bud | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A limb bud that develops into a hindlimb." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"hind limb bud" EXACT [XAO:0003066] "leg bud" RELATED [] "limb bud - hindlimb" RELATED [] "posterior limb bud" EXACT [SCTID:346164003] | ||
| Comments: | Genes: Tbx4 specifies hindlimbs. Wnt8c restricts Fgf10 in chick. |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004347(limb bud),UBERON:0005420(pelvic appendage bud) |
|---|---|
| part_of: | UBERON:0000154(posterior region of body) |
Children
| is a: | FF:0000244 (chicken leg bud day3 HH20) |
|---|---|
| develops from: | UBERON:0002103 (hindlimb),UBERON:0006871 (footplate) |
| part of: | FF:0000244 (chicken leg bud day3 HH20) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005418 (hindlimb bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_2e8df9be5fce4d0f4c0d383be5c89b7d | p@chr10:97176812..97176813, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_283554661e9418fb4cd0a6c96553646c | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_283554661e9418fb4cd0a6c96553646c | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_283554661e9418fb4cd0a6c96553646c | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_283554661e9418fb4cd0a6c96553646c | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_283554661e9418fb4cd0a6c96553646c | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_283554661e9418fb4cd0a6c96553646c | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_283554661e9418fb4cd0a6c96553646c | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_283554661e9418fb4cd0a6c96553646c | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_283554661e9418fb4cd0a6c96553646c | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_283554661e9418fb4cd0a6c96553646c | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_283554661e9418fb4cd0a6c96553646c | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_283554661e9418fb4cd0a6c96553646c | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_283554661e9418fb4cd0a6c96553646c | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_283554661e9418fb4cd0a6c96553646c | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_283554661e9418fb4cd0a6c96553646c | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_283554661e9418fb4cd0a6c96553646c | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_283554661e9418fb4cd0a6c96553646c | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_283554661e9418fb4cd0a6c96553646c | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_283554661e9418fb4cd0a6c96553646c | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_283554661e9418fb4cd0a6c96553646c | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_283554661e9418fb4cd0a6c96553646c | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_283554661e9418fb4cd0a6c96553646c | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_283554661e9418fb4cd0a6c96553646c | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_283554661e9418fb4cd0a6c96553646c | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_283554661e9418fb4cd0a6c96553646c | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_283554661e9418fb4cd0a6c96553646c | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_283554661e9418fb4cd0a6c96553646c | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_283554661e9418fb4cd0a6c96553646c | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_283554661e9418fb4cd0a6c96553646c | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_283554661e9418fb4cd0a6c96553646c | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_283554661e9418fb4cd0a6c96553646c | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_283554661e9418fb4cd0a6c96553646c | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_283554661e9418fb4cd0a6c96553646c | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_283554661e9418fb4cd0a6c96553646c | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_283554661e9418fb4cd0a6c96553646c | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_283554661e9418fb4cd0a6c96553646c | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_283554661e9418fb4cd0a6c96553646c | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_283554661e9418fb4cd0a6c96553646c | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_283554661e9418fb4cd0a6c96553646c | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_283554661e9418fb4cd0a6c96553646c | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_283554661e9418fb4cd0a6c96553646c | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_283554661e9418fb4cd0a6c96553646c | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_283554661e9418fb4cd0a6c96553646c | p@chr1:145478051..145478060, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_08d6fd1fb5d997e5a90d3b391fd10aa3 | p73@XIRP2 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The bilateral thickening of the ectoderm in the region of the first noticeable at NF stage 47, and innervated by NF stage 51. The hind limb buds develop before the forelimb buds.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
