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{{UBERON
{{UBERON
|id=UBERON:0005425
|alt_id=
|name=presumptive neural retina
|namespace=
|def="Portion of tissue that is the inner layer of the optic cup and will become the neural retina." [ZFIN:curator]
|xref=EHDAA2:0001304;;EMAPA:16675;;TAO:0001071;;VHOG:0000490;;ZFA:0001071
|is_a=UBERON:0006598;;UBERON:0010312
|synonym="inner layer optic cup" EXACT [ZFA:0001071];;"optic cup inner layer" EXACT [EHDAA2:0001304];;"presumptive retinas" EXACT PLURAL [ZFA:0001071]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of tissue that is the inner layer of the optic cup and will become the neural retina." [ZFIN:curator]
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005425
|is_a=UBERON:0006598 ;;UBERON:0010312
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=presumptive neural retina
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003072
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="inner layer optic cup" EXACT [ZFA:0001071];;"optic cup inner layer" EXACT [EHDAA2:0001304];;"presumptive retinas" EXACT PLURAL [ZFA:0001071]
|union_of=
|xref=EHDAA2:0001304;;EMAPA:16675;;TAO:0001071;;VHOG:0000490;;ZFA:0001071
}}
}}

Latest revision as of 17:53, 12 September 2014

Name:presumptive neural retina
Namespace:FANTOM
Definition:"Portion of tissue that is the inner layer of the optic cup and will become the neural retina." [ZFIN:curator]
Xrefs:
links:

EHDAA2:0001304
EMAPA:16675
TAO:0001071
VHOG:0000490

ZFA:0001071
Synonyms: "inner layer optic cup" EXACT [ZFA:0001071]
"optic cup inner layer" EXACT [EHDAA2:0001304]
"presumptive retinas" EXACT PLURAL [ZFA:0001071]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0006598(presumptive structure),UBERON:0010312(immature eye)
part_of:UBERON:0003072(optic cup)



Children

develops from:UBERON:0003902 (retinal neural layer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005425 (presumptive neural retina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_d49581a4c58d005b33fbe5b8ac84ab6cp@chr12:57628762..57628773, -
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_d49581a4c58d005b33fbe5b8ac84ab6cp@chr12:57628762..57628773, -
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:149250331..149250335, -
2.55e-98FFCP PHASE1:Hg19::chr7:152790347..152790351,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:152790347..152790351, +
2.55e-98FFCP PHASE2:Hg19::chr8:126163123..126163134,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr8:126163123..126163134, +
2.55e-98FFCP PHASE2:Hg19::chr4:188536760..188536764,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr4:188536760..188536764, -
2.55e-98FFCP PHASE1:Hg19::chr2:21277180..21277193,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:21277180..21277193, +
2.55e-98FFCP PHASE1:Hg19::chr2:29645795..29645797,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:29645795..29645797, +
2.55e-98FFCP PHASE1:Hg19::chr7:103086717..103086724,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:103086717..103086724, +
2.55e-98FFCP PHASE1:Hg19::chr10:37679189..37679193,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr10:37679189..37679193, +
2.55e-98FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:77789390..77789399, -
2.55e-98FFCP PHASE2:Hg19::chr3:181328472..181328478,+#_3ed8ef55777c3b623f5fc9b1f7764abfp25@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr1:203036812..203036840,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:203036812..203036840, +
2.55e-98FFCP PHASE2:Hg19::chr7:152790347..152790351,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:152790347..152790351, +
2.55e-98FFCP PHASE1:Hg19::chr5:109466651..109466653,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:109466651..109466653, +
2.55e-98FFCP PHASE1:Hg19::chr2:171939999..171940009,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:171939999..171940009, -
2.55e-98FFCP PHASE1:Hg19::chr14:37227792..37227796,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:37227792..37227796, -
2.55e-98FFCP PHASE2:Hg19::chr14:106176908..106176916,-#_3ed8ef55777c3b623f5fc9b1f7764abfp3@BC098451
2.55e-98FFCP PHASE2:Hg19::chr19:48479835..48479841,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:48479835..48479841, -
2.55e-98FFCP PHASE2:Hg19::chr7:103086717..103086724,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:103086717..103086724, +
2.55e-98FFCP PHASE2:Hg19::chr7:77789390..77789399,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:77789390..77789399, -
2.55e-98FFCP PHASE2:Hg19::chr19:35978717..35978722,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:35978717..35978722, -
2.55e-98FFCP PHASE1:Hg19::chr5:103200303..103200307,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:103200303..103200307, +
2.55e-98FFCP PHASE1:Hg19::chr1:169073323..169073334,+#_3ed8ef55777c3b623f5fc9b1f7764abfp4@ENST00000415637
2.55e-98FFCP PHASE1:Hg19::chr17:47107522..47107524,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr17:47107522..47107524, +
2.55e-98FFCP PHASE2:Hg19::chr5:109466651..109466653,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:109466651..109466653, +
2.55e-98FFCP PHASE2:Hg19::chr18:45498690..45498695,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr18:45498690..45498695, -
2.55e-98FFCP PHASE2:Hg19::chr16:55740953..55740956,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr16:55740953..55740956, +
2.55e-98FFCP PHASE2:Hg19::chr1:7709325..7709329,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:7709325..7709329, +
2.55e-98FFCP PHASE2:Hg19::chr16:19586229..19586233,+#_3ed8ef55777c3b623f5fc9b1f7764abfp12@C16orf62
2.55e-98FFCP PHASE2:Hg19::chr10:22768515..22768517,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr10:22768515..22768517, +
2.55e-98FFCP PHASE2:Hg19::chr5:103200303..103200307,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:103200303..103200307, +
2.55e-98FFCP PHASE1:Hg19::chr18:61506836..61506840,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr18:61506836..61506840, +
2.55e-98FFCP PHASE2:Hg19::chr14:78718132..78718157,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:78718132..78718157, +
2.55e-98FFCP PHASE1:Hg19::chr3:77060783..77060789,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:77060783..77060789, +
2.55e-98FFCP PHASE2:Hg19::chr12:59444098..59444102,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:59444098..59444102, +
2.55e-98FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr18:39859562..39859566, +
2.55e-98FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:13992334..13992338, -
2.55e-98FFCP PHASE2:Hg19::chrX:25873187..25873209,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chrX:25873187..25873209, +
2.55e-98FFCP PHASE2:Hg19::chr16:89970522..89970530,+#_3ed8ef55777c3b623f5fc9b1f7764abfp9@TCF25
2.55e-98FFCP PHASE2:Hg19::chr1:44991346..44991355,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:44991346..44991355, +
2.55e-98FFCP PHASE2:Hg19::chr11:57030314..57030346,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr11:57030314..57030346, +
2.55e-98FFCP PHASE1:Hg19::chr1:66713214..66713221,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:66713214..66713221, +
2.55e-98FFCP PHASE2:Hg19::chr3:77060783..77060789,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:77060783..77060789, +
2.55e-98FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:165170873..165170919, -
2.55e-98FFCP PHASE2:Hg19::chr18:61506836..61506840,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr18:61506836..61506840, +
2.55e-98FFCP PHASE1:Hg19::chr1:1361494..1361497,+#_3ed8ef55777c3b623f5fc9b1f7764abfp7@TMEM88B
2.55e-98FFCP PHASE1:Hg19::chr13:64423563..64423566,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr13:64423563..64423566, +
2.55e-98FFCP PHASE2:Hg19::chr12:68567714..68567717,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:68567714..68567717, +
2.55e-98FFCP PHASE2:Hg19::chr3:131712314..131712315,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:131712314..131712315, -
2.55e-98FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_3ed8ef55777c3b623f5fc9b1f7764abfp59@ANK3
2.55e-98FFCP PHASE2:Hg19::chr1:86911063..86911068,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:86911063..86911068, +
2.55e-98FFCP PHASE1:Hg19::chr17:12935401..12935405,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr17:12935401..12935405, -
2.55e-98FFCP PHASE1:Hg19::chr19:20382476..20382481,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:20382476..20382481, -
2.55e-98FFCP PHASE1:Hg19::chr5:54763740..54763746,-#_3ed8ef55777c3b623f5fc9b1f7764abfp10@PPAP2A
2.55e-98FFCP PHASE2:Hg19::chr5:54763740..54763746,-#_3ed8ef55777c3b623f5fc9b1f7764abfp10@PPAP2A
2.55e-98FFCP PHASE1:Hg19::chr14:68527802..68527806,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:68527802..68527806, +
2.55e-98FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_3ed8ef55777c3b623f5fc9b1f7764abfp59@ANK3
2.55e-98FFCP PHASE1:Hg19::chr14:88034381..88034386,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:88034381..88034386, -
2.55e-98FFCP PHASE2:Hg19::chr2:242808350..242808356,+#_3ed8ef55777c3b623f5fc9b1f7764abfp2@LOC100131763
2.55e-98FFCP PHASE1:Hg19::chr11:30166055..30166059,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr11:30166055..30166059, -
2.55e-98FFCP PHASE1:Hg19::chr21:22483836..22483880,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr21:22483836..22483880, +
2.55e-98FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:172318159..172318160, +
2.55e-98FFCP PHASE2:Hg19::chr2:240176859..240176904,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:240176859..240176904, -
2.55e-98FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:33229308..33229311, -
2.55e-98FFCP PHASE1:Hg19::chr10:118927879..118927891,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr10:118927879..118927891, +
2.55e-98FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_3ed8ef55777c3b623f5fc9b1f7764abfp3@ENST00000558781
2.55e-98FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:172318159..172318160, +
2.55e-98FFCP PHASE2:Hg19::chr14:37227792..37227796,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:37227792..37227796, -
2.55e-98FFCP PHASE2:Hg19::chr12:296753..296755,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:296753..296755, -
2.55e-98FFCP PHASE1:Hg19::chr1:154942133..154942148,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:154942133..154942148, -
2.55e-98FFCP PHASE2:Hg19::chr5:33229308..33229311,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:33229308..33229311, -
2.55e-98FFCP PHASE2:Hg19::chr3:163246025..163246029,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:163246025..163246029, +
2.55e-98FFCP PHASE2:Hg19::chr11:30166055..30166059,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr11:30166055..30166059, -
2.55e-98FFCP PHASE2:Hg19::chr2:97626726..97626741,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:97626726..97626741, +
2.55e-98FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr21:45724075..45724081, +
2.55e-98FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_3ed8ef55777c3b623f5fc9b1f7764abfp41@NAV3
2.55e-98FFCP PHASE1:Hg19::chr12:296753..296755,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:296753..296755, -
2.55e-98FFCP PHASE1:Hg19::chr7:73444812..73444816,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:73444812..73444816, +
2.55e-98FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:27750995..27750997, -
2.55e-98FFCP PHASE2:Hg19::chr16:66170755..66170759,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr16:66170755..66170759, -

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