UBERON:0005734: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 12: | Line 12: | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=tunica adventitia | |name=tunica adventitia of blood vessel | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= |
Latest revision as of 17:54, 12 September 2014
Name: | tunica adventitia of blood vessel | |
---|---|---|
Namespace: | FANTOM | |
Definition: | "The outermost layer of a blood vessel, surrounding the tunica media. It is mainly composed of collagen. The collagen serves to anchor the blood vessel to nearby organs, giving it stability." [Wikipedia:Tunica_externa_%28vessels%29] | |
Xrefs: |
| |
Synonyms: |
"adventitia externa" EXACT [Wikipedia:Tunica_externa_%28vessels%29] "external coat" RELATED [Wikipedia:Tunica_externa_%28vessels%29] "tunica adventitia of vessel" EXACT [Wikipedia:Tunica_externa_%28vessels%29] "tunica externa vasorum, tunica adventitia vasorum" RELATED LATIN [Wikipedia:Tunica_externa_%28vessels%29] | |
Comments: | TODO - note terminological problems. WP says tunica external layer of blood vessel. FMA says tunica externa |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004797(blood vessel layer),UBERON:0005742(adventitia) |
---|
Children
is a: | UBERON:0004664 (aorta tunica adventitia),UBERON:0007240 (tunica adventitia of artery) |
---|---|
part of: | CL:1000306 (fibroblast of tunica adventitia of artery) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11245-116E3 (Fibroblast - Aortic Adventitial, donor1)
- 11326-117E3 (Fibroblast - Aortic Adventitial, donor2)
- 11401-118D6 (Fibroblast - Aortic Adventitial, donor3)
- 14309-155C7
- 14310-155C8 (Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction))
- 14311-155C9 (Fibroblast - Aortic Adventitial, donor3 (nuclear fraction))
- 14330-155F1
- 14331-155F2 (Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction))
- 14332-155F3 (Fibroblast - Aortic Adventitial, donor2 (nuclear fraction))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005734 (tunica adventitia of blood vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data