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{{UBERON
{{UBERON
|id=UBERON:0005749
|alt_id=
|name=glomerular tuft
|namespace=
|def="the capillary loops of the kidney that normally function as a filtration unit[MP]. ...Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus[GudMap]." [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron, MP:0005325, Wikipedia:Glomerulus]
|xref=EMAPA:28239
|is_a=UBERON:0000064;;UBERON:0004120
|synonym="glomerulus" RELATED [EMAPA:28239]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the capillary loops of the kidney that normally function as a filtration unit[MP]. ...Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus[GudMap]." [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron, MP:0005325, Wikipedia:Glomerulus]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0003220
|develops_from=UBERON:0003220
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005749
|is_a=UBERON:0000064 ;;UBERON:0004120 ;;UBERON:0006554
|is_obsolete=
|located_in=
|located_in=
|name=glomerular tuft
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001230
|part_of=UBERON:0001230
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="glomerulus" RELATED [EMAPA:28239]
|union_of=
|xref=EMAPA:28239
}}
}}

Latest revision as of 17:54, 12 September 2014

Name:glomerular tuft
Namespace:FANTOM
Definition:"the capillary loops of the kidney that normally function as a filtration unit[MP]. ...Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus[GudMap]." MP:0005325, Wikipedia:Glomerulus
Xrefs:
links:
EMAPA:28239
Synonyms: "glomerulus" RELATED [EMAPA:28239]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure)
develops_from:UBERON:0003220(metanephric mesenchyme)
part_of:UBERON:0001230(glomerular capsule)



Children

develops from:UBERON:0000074 (renal glomerulus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005749 (glomerular tuft), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.87e-64FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_29b60d82ae7c72c7ea5ea6e19a67437cp@chr2:120409486..120409492, +
6.87e-64FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_29b60d82ae7c72c7ea5ea6e19a67437cp@chr2:120409486..120409492, +
9.62e-40FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_291ab8f3fcb958a98b458202c48884b5p1@ENST00000413103
9.62e-40FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_291ab8f3fcb958a98b458202c48884b5p1@ENST00000413103
1.16e-36FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_739635ac6079049afbeba5ced5c5f5e4p@chr17:79426453..79426462, +
1.16e-36FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_739635ac6079049afbeba5ced5c5f5e4p@chr17:79426453..79426462, +
1.31e-36FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_417dd603a5b779d680ee6f30a0d2323dp@chr8:77557753..77557755, -
1.31e-36FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_417dd603a5b779d680ee6f30a0d2323dp@chr8:77557753..77557755, -
5.58e-32FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_55ffba027a4fa6253bfcf5674429ea32p6@TINAGL1
5.58e-32FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_55ffba027a4fa6253bfcf5674429ea32p6@TINAGL1
1.53e-30FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_0901bf84c5e88ad8deccdff08963fe0fp9@FURIN
1.53e-30FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_0901bf84c5e88ad8deccdff08963fe0fp9@FURIN
3.83e-30FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_2b7b5c049598c668e9c1129a0428cf49p7@LRRN4
3.83e-30FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_2b7b5c049598c668e9c1129a0428cf49p7@LRRN4
1.78e-29FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_888177c7d07a3b9fccfa8416b3bfee5ep@chr1:42777312..42777314, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_888177c7d07a3b9fccfa8416b3bfee5ep7@OTOF
1.78e-29FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_888177c7d07a3b9fccfa8416b3bfee5ep@chr6:18225523..18225534, -
1.78e-29FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_888177c7d07a3b9fccfa8416b3bfee5ep@chr22:47030082..47030087, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_888177c7d07a3b9fccfa8416b3bfee5ep@chr2:26700331..26700340, -
1.78e-29FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_888177c7d07a3b9fccfa8416b3bfee5ep@chr1:42777312..42777314, +
1.78e-29FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_888177c7d07a3b9fccfa8416b3bfee5ep@chr22:47030082..47030087, +
1.78e-29FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_888177c7d07a3b9fccfa8416b3bfee5ep7@OTOF
1.78e-29FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_888177c7d07a3b9fccfa8416b3bfee5ep@chr6:18225523..18225534, -
1.78e-29FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_888177c7d07a3b9fccfa8416b3bfee5ep@chr2:26700331..26700340, -
7.96e-27FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_76991299f6279f1bd79a2333b6da8d5fp@chr10:3477893..3477912, -
7.96e-27FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_76991299f6279f1bd79a2333b6da8d5fp@chr10:3477893..3477912, -
6.29e-26FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_d6988fcf01eaee7e5042d4ccc2695ebbp@chr1:172926077..172926120, -
6.29e-26FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_d6988fcf01eaee7e5042d4ccc2695ebbp@chr1:172926077..172926120, -
6.32e-26FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_a4a7e1530a11d6741b246d60610e2f73p5@APLN
6.32e-26FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_a4a7e1530a11d6741b246d60610e2f73p5@APLN
9.89e-26FFCP PHASE1:Hg19::chr2:693380..693398,+#_9e8ec991d44cc516fdaa2a35815fe650p@chr2:693380..693398, +
9.89e-26FFCP PHASE2:Hg19::chr2:693380..693398,+#_9e8ec991d44cc516fdaa2a35815fe650p@chr2:693380..693398, +
1.28e-23FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_2bdec54ec268dfdd9a6cc9a08c35622dp@chr2:133426030..133426041, -
1.28e-23FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_2bdec54ec268dfdd9a6cc9a08c35622dp@chr6:84849252..84849259, +
1.28e-23FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_2bdec54ec268dfdd9a6cc9a08c35622dp@chr2:133426030..133426041, -
1.28e-23FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_2bdec54ec268dfdd9a6cc9a08c35622dp@chr6:84849252..84849259, +
1.44e-23FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_708b430c35c654d4c12dab28f5f2d9cep23@TTC39A
1.44e-23FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_708b430c35c654d4c12dab28f5f2d9cep10@TRIL
1.44e-23FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_708b430c35c654d4c12dab28f5f2d9cep23@TTC39A
1.44e-23FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_708b430c35c654d4c12dab28f5f2d9cep10@TRIL
1.61e-23FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_63f518e5b1241ad6b5cecdbc63fb741ep@chr7:4051097..4051112, +
1.61e-23FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_63f518e5b1241ad6b5cecdbc63fb741ep@chr15:85403302..85403304, +
1.61e-23FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_63f518e5b1241ad6b5cecdbc63fb741ep@chr7:4051097..4051112, +
1.61e-23FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_63f518e5b1241ad6b5cecdbc63fb741ep@chr15:85403302..85403304, +
1.8e-23FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_a240e693fab0e950a89504b7b80d6f04p@chr16:2141529..2141537, +
1.8e-23FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_a240e693fab0e950a89504b7b80d6f04p@chr16:2141529..2141537, +
2.92e-22FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_c86c4f602847f558da38d50ac531d63bp@chr5:74244100..74244117, +
2.92e-22FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_c86c4f602847f558da38d50ac531d63bp@chr5:74244100..74244117, +
5.69e-22FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_a5b69df954c64751738ab60f4685574fp@chr5:148651758..148651769, -
5.69e-22FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_a5b69df954c64751738ab60f4685574fp@chr5:148651758..148651769, -
2.9e-21FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_4ff48bdd8b558d13aff99b19017cc519p@chr16:86768403..86768437, +
2.9e-21FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_4ff48bdd8b558d13aff99b19017cc519p@chr16:86768403..86768437, +
4.78e-21FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_e43a49791cd4cba941162076f7b25bccp@chr17:2076002..2076026, -
4.78e-21FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_e43a49791cd4cba941162076f7b25bccp@chr17:2076002..2076026, -
1.26e-20FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_b94d0ca3a849a1a47eda9f2acce542c6p3@FAM167B
1.26e-20FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_b94d0ca3a849a1a47eda9f2acce542c6p3@FAM167B
2.32e-20FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_909ffad8cc14c3cb0083bdcf48d8e9a4p@chr11:124628392..124628427, -
2.32e-20FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_909ffad8cc14c3cb0083bdcf48d8e9a4p@chr11:124628392..124628427, -
3.42e-20FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_8bb1ef562e698a1b456e9c69b8f6aefap1@ENST00000487339
3.42e-20FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_8bb1ef562e698a1b456e9c69b8f6aefap1@ENST00000487339
3.44e-20FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_2255b18d991b605c5859e9e8f8b05a10p@chr19:47231340..47231383, -
3.44e-20FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_2255b18d991b605c5859e9e8f8b05a10p@chr19:47231340..47231383, -
3.58e-20FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_8aea66d6df10b85162e64b9a06e5a40dp@chr19:1826957..1826984, -
3.58e-20FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_8aea66d6df10b85162e64b9a06e5a40dp@chr19:1826957..1826984, -
4.39e-20FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_910e78a2aba8d5559f6852059ded7371p@chr4:38057595..38057624, -
4.39e-20FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_910e78a2aba8d5559f6852059ded7371p@chr4:38057595..38057624, -
7.13e-20FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_69e191d7537687ce59be418aef56feeep@chr2:133426106..133426117, -
7.13e-20FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_69e191d7537687ce59be418aef56feeep@chr2:133426106..133426117, -
7.84e-20FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_f05812e4ee87e2202b0fd21dc28269eap@chr9:35753821..35753835, -
7.84e-20FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_f05812e4ee87e2202b0fd21dc28269eap@chr15:36653709..36653720, -
7.84e-20FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_f05812e4ee87e2202b0fd21dc28269eap@chr15:36653709..36653720, -
7.84e-20FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_f05812e4ee87e2202b0fd21dc28269eap@chr9:35753821..35753835, -
8.62e-20FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_032045c3bf30e51a3b2a0b3dd88fdbdbp@chr4:145568170..145568180, -
8.62e-20FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_032045c3bf30e51a3b2a0b3dd88fdbdbp@chr4:145568170..145568180, -
1.04e-19FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_01d6000aafccf816eee8655e467fae3dp1@WDR87
1.04e-19FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_01d6000aafccf816eee8655e467fae3dp1@WDR87
1.15e-19FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_251dc3528af322df29cd29e73d586116p@chr14:91270270..91270281, -
1.15e-19FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_251dc3528af322df29cd29e73d586116p@chr14:91270270..91270281, -
2.44e-19FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_4df5d5b2d0d1e6b5e3948379f581ca6ep6@ACVRL1
2.44e-19FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_4df5d5b2d0d1e6b5e3948379f581ca6ep6@ACVRL1
3.27e-19FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_a580aaf706ad70f332b6e35cd5386261p@chr3:43538305..43538325, -
3.27e-19FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_a580aaf706ad70f332b6e35cd5386261p@chr3:43538305..43538325, -
4.64e-19FFCP PHASE1:Hg19::chr17:171147..171161,+#_5b0755425b8061266a270c6abd0aadd4p@chr17:171147..171161, +
4.64e-19FFCP PHASE2:Hg19::chr17:171147..171161,+#_5b0755425b8061266a270c6abd0aadd4p@chr17:171147..171161, +
5.39e-19FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_416d9089c9db941e48325e1d11790a67p@chr1:22211913..22211920, +
5.39e-19FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_416d9089c9db941e48325e1d11790a67p@chr1:22211913..22211920, +
1.99e-18FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_67a21035b2681bb9eff32afa4fe127d8p7@HOXA10
1.99e-18FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_67a21035b2681bb9eff32afa4fe127d8p7@HOXA10
2.69e-18FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_f69f76713ba5d8e62ac37b390ffbafbap3@TINAGL1
2.69e-18FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_f69f76713ba5d8e62ac37b390ffbafbap3@TINAGL1
4.1e-18FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_57fbb47af8daa0b92160039cc4c193e6p17@CTGF
4.1e-18FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_57fbb47af8daa0b92160039cc4c193e6p17@CTGF
5.7e-18FFCP PHASE2:Hg19::chr11:940729..940745,+#_a7a291bc43e6668f8012ddb13d2dc2fbp5@AP2A2
5.7e-18FFCP PHASE1:Hg19::chr11:940729..940745,+#_a7a291bc43e6668f8012ddb13d2dc2fbp5@AP2A2
6.5e-18FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_4ec6a92c32773d1a4b96bdb38d860b00p@chr19:42007093..42007107, -
6.5e-18FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_4ec6a92c32773d1a4b96bdb38d860b00p@chr19:42007093..42007107, -
6.99e-18FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_3ce8f84acbab2a79e0a288618a66cebbp@chrX:128781853..128781866, -
6.99e-18FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_3ce8f84acbab2a79e0a288618a66cebbp@chrX:128781853..128781866, -
1.24e-17FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_fe6ec2f2458b3c1a99923a68641e6fa9p@chr16:86604624..86604648, +
1.24e-17FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_fe6ec2f2458b3c1a99923a68641e6fa9p@chr16:86604624..86604648, +

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