Personal tools

UBERON:0006518: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0006518
|alt_id=
|name=right lung lobe
|namespace=
|def=
|xref=MA:0001791;;ncithesaurus:Lobe_of_the_Right_Lung;;SCTID:272654004
|is_a=UBERON:0000101
|synonym="lobe of the right lung" EXACT [ncithesaurus:Lobe_of_the_Right_Lung]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006518
|is_a=UBERON:0000101
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=right lung lobe
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002167
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="lobe of the right lung" EXACT [ncithesaurus:Lobe_of_the_Right_Lung]
|union_of=
|xref=MA:0001791;;ncithesaurus:Lobe_of_the_Right_Lung;;SCTID:272654004
}}
}}

Latest revision as of 17:57, 12 September 2014

Name:right lung lobe
Namespace:FANTOM
Xrefs:
links:

MA:0001791
ncithesaurus:Lobe_of_the_Right_Lung

SCTID:272654004
Synonyms: "lobe of the right lung" EXACT [ncithesaurus:Lobe_of_the_Right_Lung]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000101(lobe of lung)
part_of:UBERON:0002167(right lung)



Children

is a:UBERON:0002171 (lower lobe of right lung)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006518 (right lung lobe), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr8:22021803..22021813,-#_8b12ccb4d70815ee1587c22d6a59dff0p@chr8:22021803..22021813, -
5.42e-195FFCP PHASE2:Hg19::chr10:81316085..81316090,-#_8b12ccb4d70815ee1587c22d6a59dff0p@chr10:81316085..81316090, -
5.42e-195FFCP PHASE1:Hg19::chr10:81316872..81316887,+#_8b12ccb4d70815ee1587c22d6a59dff0p@chr10:81316872..81316887, +
5.42e-195FFCP PHASE1:Hg19::chr2:85894675..85894679,+#_8b12ccb4d70815ee1587c22d6a59dff0p@chr2:85894675..85894679, +
5.42e-195FFCP PHASE1:Hg19::chr2:211117597..211117606,+#_8b12ccb4d70815ee1587c22d6a59dff0p@chr2:211117597..211117606, +
5.42e-195FFCP PHASE2:Hg19::chr2:85894638..85894644,+#_8b12ccb4d70815ee1587c22d6a59dff0p@chr2:85894638..85894644, +
5.42e-195FFCP PHASE1:Hg19::chr10:81374723..81374726,-#_8b12ccb4d70815ee1587c22d6a59dff0p@chr10:81374723..81374726, -
5.42e-195FFCP PHASE2:Hg19::chr2:96331830..96331836,+#_8b12ccb4d70815ee1587c22d6a59dff0p1@ENST00000425887, p1@uc002suw.1
5.42e-195FFCP PHASE1:Hg19::chrX:93772866..93772868,-#_8b12ccb4d70815ee1587c22d6a59dff0p@chrX:93772866..93772868, -
5.42e-195FFCP PHASE1:Hg19::chr10:81316085..81316090,-#_8b12ccb4d70815ee1587c22d6a59dff0p@chr10:81316085..81316090, -
5.42e-195FFCP PHASE2:Hg19::chr6:32148852..32148862,-#_8b12ccb4d70815ee1587c22d6a59dff0p@chr6:32148852..32148862, -
5.42e-195FFCP PHASE2:Hg19::chr2:85893058..85893063,-#_8b12ccb4d70815ee1587c22d6a59dff0p35@SFTPB
5.42e-195FFCP PHASE2:Hg19::chr2:85884987..85884992,-#_8b12ccb4d70815ee1587c22d6a59dff0p@chr2:85884987..85884992, -
5.42e-195FFCP PHASE1:Hg19::chr8:22021803..22021813,-#_8b12ccb4d70815ee1587c22d6a59dff0p@chr8:22021803..22021813, -
5.42e-195FFCP PHASE2:Hg19::chr2:85894675..85894679,+#_8b12ccb4d70815ee1587c22d6a59dff0p@chr2:85894675..85894679, +
5.42e-195FFCP PHASE2:Hg19::chr2:211117597..211117606,+#_8b12ccb4d70815ee1587c22d6a59dff0p@chr2:211117597..211117606, +
5.42e-195FFCP PHASE1:Hg19::chr2:85894638..85894644,+#_8b12ccb4d70815ee1587c22d6a59dff0p@chr2:85894638..85894644, +
5.42e-195FFCP PHASE1:Hg19::chr2:96331830..96331836,+#_8b12ccb4d70815ee1587c22d6a59dff0p1@ENST00000425887, p1@uc002suw.1
5.42e-195FFCP PHASE2:Hg19::chr10:81316872..81316887,+#_8b12ccb4d70815ee1587c22d6a59dff0p@chr10:81316872..81316887, +
5.42e-195FFCP PHASE1:Hg19::chr6:32148852..32148862,-#_8b12ccb4d70815ee1587c22d6a59dff0p@chr6:32148852..32148862, -
5.42e-195FFCP PHASE1:Hg19::chr2:85893058..85893063,-#_8b12ccb4d70815ee1587c22d6a59dff0p35@SFTPB
5.42e-195FFCP PHASE2:Hg19::chr10:81374723..81374726,-#_8b12ccb4d70815ee1587c22d6a59dff0p@chr10:81374723..81374726, -
5.42e-195FFCP PHASE2:Hg19::chrX:93772866..93772868,-#_8b12ccb4d70815ee1587c22d6a59dff0p@chrX:93772866..93772868, -
5.42e-195FFCP PHASE1:Hg19::chr2:85884987..85884992,-#_8b12ccb4d70815ee1587c22d6a59dff0p@chr2:85884987..85884992, -
9.37e-99FFCP PHASE2:Hg19::chr8:22021454..22021463,+#_2f6b154e64e63208dc097a40e96a27e3p@chr8:22021454..22021463, +
9.37e-99FFCP PHASE1:Hg19::chr10:81374462..81374469,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81374462..81374469, +
9.37e-99FFCP PHASE1:Hg19::chr6:32150708..32150711,-#_2f6b154e64e63208dc097a40e96a27e3p7@AGER
9.37e-99FFCP PHASE1:Hg19::chr10:81316023..81316032,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316023..81316032, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374313..81374327,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81374313..81374327, +
9.37e-99FFCP PHASE1:Hg19::chr2:85886515..85886520,-#_2f6b154e64e63208dc097a40e96a27e3p@chr2:85886515..85886520, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316910..81316917,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316910..81316917, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316311..81316313,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316311..81316313, -
9.37e-99FFCP PHASE1:Hg19::chr8:22021526..22021532,+#_2f6b154e64e63208dc097a40e96a27e3p@chr8:22021526..22021532, +
9.37e-99FFCP PHASE1:Hg19::chr6:32148869..32148878,-#_2f6b154e64e63208dc097a40e96a27e3p@chr6:32148869..32148878, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374819..81374828,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81374819..81374828, +
9.37e-99FFCP PHASE2:Hg19::chr8:22021482..22021493,+#_2f6b154e64e63208dc097a40e96a27e3p@chr8:22021482..22021493, +
9.37e-99FFCP PHASE2:Hg19::chr10:81315944..81315951,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81315944..81315951, -
9.37e-99FFCP PHASE1:Hg19::chr8:22020994..22020998,+#_2f6b154e64e63208dc097a40e96a27e3p@chr8:22020994..22020998, +
9.37e-99FFCP PHASE1:Hg19::chr10:81316041..81316047,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316041..81316047, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374331..81374339,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81374331..81374339, +
9.37e-99FFCP PHASE2:Hg19::chr8:22020085..22020093,+#_2f6b154e64e63208dc097a40e96a27e3p12@SFTPC
9.37e-99FFCP PHASE2:Hg19::chr2:85892915..85892916,-#_2f6b154e64e63208dc097a40e96a27e3p40@SFTPB
9.37e-99FFCP PHASE1:Hg19::chr2:85892885..85892890,-#_2f6b154e64e63208dc097a40e96a27e3p23@SFTPB
9.37e-99FFCP PHASE2:Hg19::chr8:22021903..22021951,-#_2f6b154e64e63208dc097a40e96a27e3p@chr8:22021903..22021951, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316132..81316137,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316132..81316137, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374587..81374595,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81374587..81374595, +
9.37e-99FFCP PHASE1:Hg19::chr10:81374313..81374327,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81374313..81374327, +
9.37e-99FFCP PHASE1:Hg19::chr8:22020196..22020202,+#_2f6b154e64e63208dc097a40e96a27e3p13@SFTPC
9.37e-99FFCP PHASE1:Hg19::chr6:32149013..32149018,-#_2f6b154e64e63208dc097a40e96a27e3p@chr6:32149013..32149018, -
9.37e-99FFCP PHASE1:Hg19::chr10:81316910..81316917,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316910..81316917, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316753..81316759,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316753..81316759, -
9.37e-99FFCP PHASE2:Hg19::chr3:127109563..127109564,-#_2f6b154e64e63208dc097a40e96a27e3p2@ENST00000488425, p2@uc003ejj.2
9.37e-99FFCP PHASE1:Hg19::chr10:81316311..81316313,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316311..81316313, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374752..81374761,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81374752..81374761, +
9.37e-99FFCP PHASE2:Hg19::chr6:117746871..117746882,-#_2f6b154e64e63208dc097a40e96a27e3p10@ROS1
9.37e-99FFCP PHASE2:Hg19::chr2:85885348..85885355,-#_2f6b154e64e63208dc097a40e96a27e3p@chr2:85885348..85885355, -
9.37e-99FFCP PHASE1:Hg19::chr2:85894689..85894696,+#_2f6b154e64e63208dc097a40e96a27e3p@chr2:85894689..85894696, +
9.37e-99FFCP PHASE1:Hg19::chr8:22021454..22021463,+#_2f6b154e64e63208dc097a40e96a27e3p@chr8:22021454..22021463, +
9.37e-99FFCP PHASE2:Hg19::chr2:85889234..85889238,-#_2f6b154e64e63208dc097a40e96a27e3p@chr2:85889234..85889238, -
9.37e-99FFCP PHASE2:Hg19::chr10:23631651..23631656,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:23631651..23631656, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316558..81316565,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316558..81316565, -
9.37e-99FFCP PHASE2:Hg19::chr2:85894661..85894668,+#_2f6b154e64e63208dc097a40e96a27e3p@chr2:85894661..85894668, +
9.37e-99FFCP PHASE1:Hg19::chr8:22020085..22020093,+#_2f6b154e64e63208dc097a40e96a27e3p12@SFTPC
9.37e-99FFCP PHASE1:Hg19::chr10:81374331..81374339,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81374331..81374339, +
9.37e-99FFCP PHASE2:Hg19::chr6:32150708..32150711,-#_2f6b154e64e63208dc097a40e96a27e3p7@AGER
9.37e-99FFCP PHASE1:Hg19::chr10:81315944..81315951,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81315944..81315951, -
9.37e-99FFCP PHASE2:Hg19::chr2:85886515..85886520,-#_2f6b154e64e63208dc097a40e96a27e3p@chr2:85886515..85886520, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316764..81316776,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316764..81316776, -
9.37e-99FFCP PHASE2:Hg19::chr8:22021526..22021532,+#_2f6b154e64e63208dc097a40e96a27e3p@chr8:22021526..22021532, +
9.37e-99FFCP PHASE1:Hg19::chr10:81374587..81374595,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81374587..81374595, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316023..81316032,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316023..81316032, -
9.37e-99FFCP PHASE1:Hg19::chr8:22021482..22021493,+#_2f6b154e64e63208dc097a40e96a27e3p@chr8:22021482..22021493, +
9.37e-99FFCP PHASE1:Hg19::chr10:81316132..81316137,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316132..81316137, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374462..81374469,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81374462..81374469, +
9.37e-99FFCP PHASE2:Hg19::chr6:32148869..32148878,-#_2f6b154e64e63208dc097a40e96a27e3p@chr6:32148869..32148878, -
9.37e-99FFCP PHASE1:Hg19::chr10:81316753..81316759,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316753..81316759, -
9.37e-99FFCP PHASE1:Hg19::chr2:85892915..85892916,-#_2f6b154e64e63208dc097a40e96a27e3p40@SFTPB
9.37e-99FFCP PHASE1:Hg19::chr10:81374752..81374761,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81374752..81374761, +
9.37e-99FFCP PHASE1:Hg19::chr8:22021903..22021951,-#_2f6b154e64e63208dc097a40e96a27e3p@chr8:22021903..22021951, -
9.37e-99FFCP PHASE2:Hg19::chr8:22020994..22020998,+#_2f6b154e64e63208dc097a40e96a27e3p@chr8:22020994..22020998, +
9.37e-99FFCP PHASE1:Hg19::chr3:127109563..127109564,-#_2f6b154e64e63208dc097a40e96a27e3p2@ENST00000488425, p2@uc003ejj.2
9.37e-99FFCP PHASE1:Hg19::chr10:23631651..23631656,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:23631651..23631656, +
9.37e-99FFCP PHASE1:Hg19::chr10:81316558..81316565,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316558..81316565, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374819..81374828,+#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81374819..81374828, +
9.37e-99FFCP PHASE1:Hg19::chr6:117746871..117746882,-#_2f6b154e64e63208dc097a40e96a27e3p10@ROS1
9.37e-99FFCP PHASE1:Hg19::chr2:85885348..85885355,-#_2f6b154e64e63208dc097a40e96a27e3p@chr2:85885348..85885355, -
9.37e-99FFCP PHASE2:Hg19::chr2:85892885..85892890,-#_2f6b154e64e63208dc097a40e96a27e3p23@SFTPB
9.37e-99FFCP PHASE1:Hg19::chr2:85889234..85889238,-#_2f6b154e64e63208dc097a40e96a27e3p@chr2:85889234..85889238, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316041..81316047,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316041..81316047, -
9.37e-99FFCP PHASE2:Hg19::chr8:22020196..22020202,+#_2f6b154e64e63208dc097a40e96a27e3p13@SFTPC
9.37e-99FFCP PHASE2:Hg19::chr6:32149013..32149018,-#_2f6b154e64e63208dc097a40e96a27e3p@chr6:32149013..32149018, -
9.37e-99FFCP PHASE1:Hg19::chr10:81316764..81316776,-#_2f6b154e64e63208dc097a40e96a27e3p@chr10:81316764..81316776, -
9.37e-99FFCP PHASE2:Hg19::chr2:85894689..85894696,+#_2f6b154e64e63208dc097a40e96a27e3p@chr2:85894689..85894696, +
9.37e-99FFCP PHASE1:Hg19::chr2:85894661..85894668,+#_2f6b154e64e63208dc097a40e96a27e3p@chr2:85894661..85894668, +
2.55e-98FFCP PHASE2:Hg19::chr2:120303717..120303738,+#_7fe0c42b7abd05e7a30ade43271f97c7p@chr2:120303717..120303738, +
2.55e-98FFCP PHASE2:Hg19::chr2:85886640..85886647,+#_7fe0c42b7abd05e7a30ade43271f97c7p@chr2:85886640..85886647, +
2.55e-98FFCP PHASE1:Hg19::chr6:8358321..8358327,+#_7fe0c42b7abd05e7a30ade43271f97c7p@chr6:8358321..8358327, +
2.55e-98FFCP PHASE2:Hg19::chr4:173916869..173916878,-#_7fe0c42b7abd05e7a30ade43271f97c7p3@uc003isx.1
2.55e-98FFCP PHASE2:Hg19::chr14:36921583..36921586,+#_7fe0c42b7abd05e7a30ade43271f97c7p@chr14:36921583..36921586, +
2.55e-98FFCP PHASE1:Hg19::chr17:66539483..66539491,+#_7fe0c42b7abd05e7a30ade43271f97c7p1@AK127041

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0006518&oldid=3277849"