UBERON:0006914: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Epithelium composed of flattened platelike cells." [Dorlands_Medical_Dictionary:MerckSource] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0006914 | |||
|is_a=UBERON:0000483 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=squamous epithelium | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=BTO:0002072;;ncithesaurus:Squamous_Epithelium;;SCTID:40118003 | |||
}} | }} | ||
Latest revision as of 17:59, 12 September 2014
| Name: | squamous epithelium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Epithelium composed of flattened platelike cells." [Dorlands_Medical_Dictionary:MerckSource] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000483(epithelium) |
|---|
Children
| is a: | UBERON:0000487 (simple squamous epithelium),UBERON:0006915 (stratified squamous epithelium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10274-104E4
- 10302-104H5
- 10330-105B6
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11255-116F4 (Sertoli Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006914 (squamous epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.14e-107 | FFCP PHASE1:Hg19::chr18:33046982..33046991,-#_31839ea46b388a72f1202488f13495b6 | p@chr18:33046982..33046991, - |
| 3.14e-107 | FFCP PHASE2:Hg19::chr18:33046982..33046991,-#_31839ea46b388a72f1202488f13495b6 | p@chr18:33046982..33046991, - |
| 4.52e-90 | FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_da6a76d2bd19d6d15b1062488e3d2b50 | p1@MIR216A |
| 4.52e-90 | FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_da6a76d2bd19d6d15b1062488e3d2b50 | p1@MIR216A |
| 8.55e-87 | FFCP PHASE2:Hg19::chr6:78171774..78171792,+#_c80748191df2d9e90e5ca3d9f87e3c03 | p@chr6:78171774..78171792, + |
| 8.55e-87 | FFCP PHASE1:Hg19::chr6:78171774..78171792,+#_c80748191df2d9e90e5ca3d9f87e3c03 | p@chr6:78171774..78171792, + |
| 1.61e-86 | FFCP PHASE1:Hg19::chr18:33047157..33047168,-#_2a1b107e7bde1792a666c4a580c01561 | p@chr18:33047157..33047168, - |
| 1.61e-86 | FFCP PHASE2:Hg19::chr18:33047157..33047168,-#_2a1b107e7bde1792a666c4a580c01561 | p@chr18:33047157..33047168, - |
| 6.89e-86 | FFCP PHASE1:Hg19::chr7:139741849..139741879,-#_62349bce306b1bcd48fccbdc8f25f276 | p12@PARP12 |
| 6.89e-86 | FFCP PHASE2:Hg19::chr7:139741849..139741879,-#_62349bce306b1bcd48fccbdc8f25f276 | p12@PARP12 |
| 9.29e-84 | FFCP PHASE1:Hg19::chr7:139741594..139741615,-#_aa3b1d8b28b991051aa6b8778b6d0141 | p5@PARP12 |
| 9.29e-84 | FFCP PHASE2:Hg19::chr7:139741594..139741615,-#_aa3b1d8b28b991051aa6b8778b6d0141 | p5@PARP12 |
| 2.65e-83 | FFCP PHASE1:Hg19::chr12:118112251..118112272,-#_82952a06bcde6c322a761a8601afb545 | p12@KSR2 |
| 2.65e-83 | FFCP PHASE2:Hg19::chr12:118112251..118112272,-#_82952a06bcde6c322a761a8601afb545 | p12@KSR2 |
| 7.06e-83 | FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_a413ecfb89fee2653076f6b86914878c | p@chr3:43538305..43538325, - |
| 7.06e-83 | FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_a413ecfb89fee2653076f6b86914878c | p@chr3:43538305..43538325, - |
| 2.52e-80 | FFCP PHASE1:Hg19::chrX:71299684..71299699,+#_db2037e7e4daf85506cb8f733b568321 | p@chrX:71299684..71299699, + |
| 2.52e-80 | FFCP PHASE2:Hg19::chrX:71299684..71299699,+#_db2037e7e4daf85506cb8f733b568321 | p@chrX:71299684..71299699, + |
| 1.13e-77 | FFCP PHASE2:Hg19::chr10:50153703..50153720,+#_d35151f1c18deaa4f53595b46231976a | p7@WDFY4 |
| 1.13e-77 | FFCP PHASE1:Hg19::chr10:50153703..50153720,+#_d35151f1c18deaa4f53595b46231976a | p7@WDFY4 |
| 1.25e-76 | FFCP PHASE2:Hg19::chr10:50153735..50153750,+#_a8ee185282ff853080750fd1ac79ba8d | p6@WDFY4 |
| 1.25e-76 | FFCP PHASE1:Hg19::chr10:50153735..50153750,+#_a8ee185282ff853080750fd1ac79ba8d | p6@WDFY4 |
| 1.51e-75 | FFCP PHASE1:Hg19::chrX:15518894..15518905,+#_d8a932f6187161c6d226506b59fe2c27 | p2@BMX |
| 1.51e-75 | FFCP PHASE2:Hg19::chrX:15518894..15518905,+#_d8a932f6187161c6d226506b59fe2c27 | p2@BMX |
| 6.01e-75 | FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_d10c1518f0744cb7734354654d59dec5 | p@chr6:3753188..3753192, - |
| 6.01e-75 | FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_d10c1518f0744cb7734354654d59dec5 | p@chr6:3753188..3753192, - |
| 2.43e-73 | FFCP PHASE1:Hg19::chr5:95920642..95920681,+#_3690ed703103496b82cf3a16c0e3612b | p1@ENST00000513158 |
| 2.43e-73 | FFCP PHASE2:Hg19::chr5:95920642..95920681,+#_3690ed703103496b82cf3a16c0e3612b | p1@ENST00000513158 |
| 3.04e-73 | FFCP PHASE2:Hg19::chr10:99655692..99655725,-#_083c9f69bde5695d7c06990599cbeff4 | p@chr10:99655692..99655725, - |
| 3.04e-73 | FFCP PHASE1:Hg19::chr10:99655692..99655725,-#_083c9f69bde5695d7c06990599cbeff4 | p@chr10:99655692..99655725, - |
| 3.67e-73 | FFCP PHASE1:Hg19::chr7:150329732..150329739,-#_3c2c90f415c967de5cfe0b7e80f4ac12 | p8@GIMAP6 |
| 3.67e-73 | FFCP PHASE2:Hg19::chr7:150329732..150329739,-#_3c2c90f415c967de5cfe0b7e80f4ac12 | p8@GIMAP6 |
| 5.19e-73 | FFCP PHASE1:Hg19::chr14:75469820..75469826,+#_329df9ff334f0e2b8aaae3cb9de81147 | p4@EIF2B2 |
| 5.19e-73 | FFCP PHASE2:Hg19::chr14:75469820..75469826,+#_329df9ff334f0e2b8aaae3cb9de81147 | p4@EIF2B2 |
| 2.1e-72 | FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_4e3a94ca3bc99b0f80fb949d95685088 | p@chr6:78171746..78171769, + |
| 2.1e-72 | FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_4e3a94ca3bc99b0f80fb949d95685088 | p@chr6:78171746..78171769, + |
| 2.24e-72 | FFCP PHASE1:Hg19::chr6:148664333..148664338,-#_f127ff3ed92114e8b48221339aa2ebd0 | p@chr6:148664333..148664338, - |
| 2.24e-72 | FFCP PHASE2:Hg19::chr6:148664333..148664338,-#_f127ff3ed92114e8b48221339aa2ebd0 | p@chr6:148664333..148664338, - |
| 1.53e-70 | FFCP PHASE2:Hg19::chr14:38725228..38725236,-#_6b5f935024c6b2ecafe33cf0cdb82202 | p5@CLEC14A |
| 1.53e-70 | FFCP PHASE1:Hg19::chr14:38725228..38725236,-#_6b5f935024c6b2ecafe33cf0cdb82202 | p5@CLEC14A |
| 2.42e-70 | FFCP PHASE1:Hg19::chr5:34656634..34656645,+#_51018289e248707db1947f76226657bd | p15@RAI14 |
| 2.42e-70 | FFCP PHASE2:Hg19::chr5:34656634..34656645,+#_51018289e248707db1947f76226657bd | p15@RAI14 |
| 5.67e-70 | FFCP PHASE1:Hg19::chr4:145566874..145566889,+#_bb90b58e6b2e28af0e21014d01bcc350 | p15@HHIP |
| 5.67e-70 | FFCP PHASE2:Hg19::chr4:145566874..145566889,+#_bb90b58e6b2e28af0e21014d01bcc350 | p15@HHIP |
| 6.41e-70 | FFCP PHASE1:Hg19::chr9:139563124..139563129,+#_991c6f5b110e4b8f414c87be86f61ca3 | p@chr9:139563124..139563129, + |
| 6.41e-70 | FFCP PHASE2:Hg19::chr9:139563124..139563129,+#_991c6f5b110e4b8f414c87be86f61ca3 | p@chr9:139563124..139563129, + |
| 1.4e-69 | FFCP PHASE1:Hg19::chr17:62084108..62084111,-#_b9e3429c2ba6d671911e14278630556b | p5@ICAM2 |
| 1.4e-69 | FFCP PHASE2:Hg19::chr17:62084108..62084111,-#_b9e3429c2ba6d671911e14278630556b | p5@ICAM2 |
| 3.0e-69 | FFCP PHASE1:Hg19::chr7:150690812..150690817,+#_981b04f2ecfcc2298cfc834cf6f0128f | p10@NOS3 |
| 3.0e-69 | FFCP PHASE2:Hg19::chr7:150690812..150690817,+#_981b04f2ecfcc2298cfc834cf6f0128f | p10@NOS3 |
| 5.88e-69 | FFCP PHASE1:Hg19::chr5:176433333..176433349,-#_5abd31bf10efb10b4a305541b7201190 | p11@UIMC1 |
| 5.88e-69 | FFCP PHASE2:Hg19::chr5:176433333..176433349,-#_5abd31bf10efb10b4a305541b7201190 | p11@UIMC1 |
| 1.29e-67 | FFCP PHASE2:Hg19::chr11:124761247..124761258,-#_68141a5750b41cbfce70d60ad9cf8ecb | p@chr11:124761247..124761258, - |
| 1.29e-67 | FFCP PHASE1:Hg19::chr11:124761247..124761258,-#_68141a5750b41cbfce70d60ad9cf8ecb | p@chr11:124761247..124761258, - |
| 1.33e-67 | FFCP PHASE1:Hg19::chr1:22264210..22264241,+#_53b7e6a23f114f6d9467e6b3d0060cc0 | p@chr1:22264210..22264241, + |
| 1.33e-67 | FFCP PHASE2:Hg19::chr1:22264210..22264241,+#_53b7e6a23f114f6d9467e6b3d0060cc0 | p@chr1:22264210..22264241, + |
| 1.57e-67 | FFCP PHASE2:Hg19::chr14:38725249..38725254,-#_df1b287891b8c6efdaeccc270d3b5f3e | p6@CLEC14A |
| 1.57e-67 | FFCP PHASE1:Hg19::chr14:38725249..38725254,-#_df1b287891b8c6efdaeccc270d3b5f3e | p6@CLEC14A |
| 4.07e-66 | FFCP PHASE1:Hg19::chr9:139543445..139543462,+#_5dfb053b9b6b9519df5833a7d711dc24 | p@chr9:139543445..139543462, + |
| 4.07e-66 | FFCP PHASE2:Hg19::chr9:139543445..139543462,+#_5dfb053b9b6b9519df5833a7d711dc24 | p@chr9:139543445..139543462, + |
| 1.27e-65 | FFCP PHASE1:Hg19::chr12:105863705..105863718,+#_8a0457bdffc830bb8470d1575dc9ac83 | p@chr12:105863705..105863718, + |
| 1.27e-65 | FFCP PHASE2:Hg19::chr12:105863705..105863718,+#_8a0457bdffc830bb8470d1575dc9ac83 | p@chr12:105863705..105863718, + |
| 1.4e-65 | FFCP PHASE1:Hg19::chr9:139541134..139541139,+#_4bc0bdef78c86c97a991442fca7f0a90 | p@chr9:139541134..139541139, + |
| 1.4e-65 | FFCP PHASE2:Hg19::chr9:139541134..139541139,+#_4bc0bdef78c86c97a991442fca7f0a90 | p@chr9:139541134..139541139, + |
| 3.18e-65 | FFCP PHASE1:Hg19::chr13:32835894..32835907,+#_a308d65db6bc1149b6914c3105b79efc | p@chr13:32835894..32835907, + |
| 3.18e-65 | FFCP PHASE2:Hg19::chr13:32835894..32835907,+#_a308d65db6bc1149b6914c3105b79efc | p@chr13:32835894..32835907, + |
| 9.94e-65 | FFCP PHASE2:Hg19::chr19:41985048..41985050,-#_89a02c73f373647ce2ad3a9c1f9e0612 | p@chr19:41985048..41985050, - |
| 9.94e-65 | FFCP PHASE1:Hg19::chr19:41985048..41985050,-#_89a02c73f373647ce2ad3a9c1f9e0612 | p@chr19:41985048..41985050, - |
| 2.27e-64 | FFCP PHASE1:Hg19::chr12:105863636..105863650,+#_82a753733bcfaace85cf625b95a274b7 | p@chr12:105863636..105863650, + |
| 2.27e-64 | FFCP PHASE2:Hg19::chr12:105863636..105863650,+#_82a753733bcfaace85cf625b95a274b7 | p@chr12:105863636..105863650, + |
| 5.97e-64 | FFCP PHASE1:Hg19::chr9:139543390..139543404,+#_b8bc40677dc992298ed097e3e0909e4d | p@chr9:139543390..139543404, + |
| 5.97e-64 | FFCP PHASE2:Hg19::chr9:139543390..139543404,+#_b8bc40677dc992298ed097e3e0909e4d | p@chr9:139543390..139543404, + |
| 1.12e-63 | FFCP PHASE2:Hg19::chr16:2220383..2220402,+#_e77c7bf7586e1971dbf83ac109dfc8c9 | p@chr16:2220383..2220402, + |
| 1.12e-63 | FFCP PHASE1:Hg19::chr16:2220383..2220402,+#_e77c7bf7586e1971dbf83ac109dfc8c9 | p@chr16:2220383..2220402, + |
| 1.72e-63 | FFCP PHASE1:Hg19::chr6:11607864..11607875,+#_2f8493c7efcce56c0c8ff8a1332ef2a2 | p@chr6:11607864..11607875, + |
| 1.72e-63 | FFCP PHASE2:Hg19::chr6:11607864..11607875,+#_2f8493c7efcce56c0c8ff8a1332ef2a2 | p@chr6:11607864..11607875, + |
| 4.91e-63 | FFCP PHASE2:Hg19::chr10:129785574..129785580,+#_93f815788b9b6853e906823d1efd5732 | p14@PTPRE |
| 4.91e-63 | FFCP PHASE1:Hg19::chr10:129785574..129785580,+#_93f815788b9b6853e906823d1efd5732 | p14@PTPRE |
| 1.05e-62 | FFCP PHASE2:Hg19::chr12:96830523..96830532,+#_46e9d9d33ad0a576752bbcc46b5a44b7 | p@chr12:96830523..96830532, + |
| 1.05e-62 | FFCP PHASE1:Hg19::chr12:96830523..96830532,+#_46e9d9d33ad0a576752bbcc46b5a44b7 | p@chr12:96830523..96830532, + |
| 1.93e-62 | FFCP PHASE1:Hg19::chr13:32835912..32835936,+#_073f2e489a33bf1d577f2c42d2a81387 | p@chr13:32835912..32835936, + |
| 1.93e-62 | FFCP PHASE2:Hg19::chr13:32835912..32835936,+#_073f2e489a33bf1d577f2c42d2a81387 | p@chr13:32835912..32835936, + |
| 2.51e-62 | FFCP PHASE2:Hg19::chr1:16076122..16076138,-#_f87b34351f526392bbb0d4bd73f96c0f | p1@ENST00000418525 |
| 2.51e-62 | FFCP PHASE1:Hg19::chr1:16076122..16076138,-#_f87b34351f526392bbb0d4bd73f96c0f | p1@ENST00000418525 |
| 2.82e-62 | FFCP PHASE1:Hg19::chr12:12491541..12491552,-#_dc40259ee0bcf7bd12d26e645a9cd451 | p11@MANSC1 |
| 2.82e-62 | FFCP PHASE2:Hg19::chr12:12491541..12491552,-#_dc40259ee0bcf7bd12d26e645a9cd451 | p11@MANSC1 |
| 3.6e-60 | FFCP PHASE1:Hg19::chr1:28785607..28785624,+#_1d0ea9692ef02d11391d87dc255d036b | p@chr1:28785607..28785624, + |
| 3.6e-60 | FFCP PHASE2:Hg19::chr1:28785607..28785624,+#_1d0ea9692ef02d11391d87dc255d036b | p@chr1:28785607..28785624, + |
| 3.96e-60 | FFCP PHASE2:Hg19::chr18:33047117..33047138,-#_2aafc8d26d24b9eabc7821b267cc801e | p@chr18:33047117..33047138, - |
| 3.96e-60 | FFCP PHASE1:Hg19::chr18:33047117..33047138,-#_2aafc8d26d24b9eabc7821b267cc801e | p@chr18:33047117..33047138, - |
| 4.55e-60 | FFCP PHASE1:Hg19::chr18:33047076..33047099,-#_08759c46d15d9705de04e18600ff3ae2 | p@chr18:33047076..33047099, - |
| 4.55e-60 | FFCP PHASE2:Hg19::chr18:33047076..33047099,-#_08759c46d15d9705de04e18600ff3ae2 | p@chr18:33047076..33047099, - |
| 6.59e-60 | FFCP PHASE1:Hg19::chr3:58034268..58034295,+#_4a7a9a599475c677945639a3493e8028 | p@chr3:58034268..58034295, + |
| 6.59e-60 | FFCP PHASE2:Hg19::chr3:58034268..58034295,+#_4a7a9a599475c677945639a3493e8028 | p@chr3:58034268..58034295, + |
| 1.95e-59 | FFCP PHASE1:Hg19::chr15:39423060..39423066,+#_c83aa27879ad46afcec4aafc8256661d | p@chr15:39423060..39423066, + |
| 1.95e-59 | FFCP PHASE2:Hg19::chr15:39423060..39423066,+#_c83aa27879ad46afcec4aafc8256661d | p@chr15:39423060..39423066, + |
| 2.21e-57 | FFCP PHASE1:Hg19::chr2:225266779..225266786,-#_e3dc0b26e838f6244854ebf8b1769bfb | p4@FAM124B |
| 2.21e-57 | FFCP PHASE2:Hg19::chr2:225266779..225266786,-#_e3dc0b26e838f6244854ebf8b1769bfb | p4@FAM124B |
| 8.2e-57 | FFCP PHASE1:Hg19::chr7:106720036..106720059,-#_bc5309b3c707bfd5375b770e0fef0217 | p@chr7:106720036..106720059, - |
| 8.2e-57 | FFCP PHASE2:Hg19::chr7:106720036..106720059,-#_bc5309b3c707bfd5375b770e0fef0217 | p@chr7:106720036..106720059, - |
