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{{UBERON
{{UBERON
|id=UBERON:0007100
|alt_id=
|name=circulatory organ
|namespace=
|def="A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood[GO]." [GO:0007507]
|xref=ANISEED:1235302;;FBbt:00003154;;http://www.sciencemag.org/content/313/5795/1922/F1.large.jpg;;TADS:0000147
|is_a=UBERON:0003103
|synonym="adult heart" RELATED [FBbt:00003154];;"cardiac pump" EXACT [];;"cardiac structure" RELATED [];;"dorsal tube" NARROW [Wikipedia:Heart];;"heart" NARROW [GO:0007507];;"heart or heart like organ" EXACT []
|comment=editor note: we need to find the appropriate GO process to use for the definition - 'blood circulation' may not apply to invertebrates; 'circulatory system process' is circular. Note we cannot use a part_of-based definition as this results in the iris and all vascular elements being categorized as circulatory organs. Taxon notes: note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. "The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian". Amniotes:  four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis. Gene notes: Bmp, Nkx, Gata
|comment=editor note: we need to find the appropriate GO process to use for the definition - 'blood circulation' may not apply to invertebrates; 'circulatory system process' is circular. Note we cannot use a part_of-based definition as this results in the iris and all vascular elements being categorized as circulatory organs. Taxon notes: note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. "The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian". Amniotes:  four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis. Gene notes: Bmp, Nkx, Gata
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood[GO]." [GO:0007507]
|subset=grouping_class
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007100
|is_a=UBERON:0015228
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=primary circulatory organ
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001009
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"present_in_taxon" NCBITaxon:7718
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"present_in_taxon" NCBITaxon:7718
|is_obsolete=
|subset=grouping_class
|preceded_by=
|synonym="adult heart" RELATED [FBbt:00003154];;"cardiac pump" EXACT [];;"cardiac structure" RELATED [];;"dorsal tube" NARROW [Wikipedia:Heart];;"heart" NARROW [GO:0007507];;"heart or heart like organ" EXACT []
|union_of=
|xref=ANISEED:1235302;;FBbt:00003154;;http://www.sciencemag.org/content/313/5795/1922/F1.large.jpg;;TADS:0000147
}}
}}

Latest revision as of 18:00, 12 September 2014

Name:primary circulatory organ
Namespace:FANTOM
Definition:"A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood[GO]." [GO:0007507]
Xrefs:
links:

ANISEED:1235302
FBbt:00003154
[1]

TADS:0000147
Synonyms: "adult heart" RELATED [FBbt:00003154]
"cardiac pump" EXACT []
"cardiac structure" RELATED []
"dorsal tube" NARROW [Wikipedia:Heart]
"heart" NARROW [GO:0007507]
"heart or heart like organ" EXACT []
Comments:editor note: we need to find the appropriate GO process to use for the definition - 'blood circulation' may not apply to invertebrates; 'circulatory system process' is circular. Note we cannot use a part_of-based definition as this results in the iris and all vascular elements being categorized as circulatory organs. Taxon notes: note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. "The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian". Amniotes: four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis. Gene notes: Bmp, Nkx, Gata
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0015228(circulatory organ)
part_of:UBERON:0001009(circulatory system)



Children

is a:UBERON:0000948 (heart)
part of:CL:0000746 (cardiac muscle cell),CL:0002494 (cardiocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007100 (primary circulatory organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data