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{{UBERON
{{UBERON
|id=UBERON:0007213
|alt_id=
|name=mesenchyme derived from head neural crest
|namespace=
|def=
|xref=EFO:0003572;;EHDAA2:0000735;;EMAPA:16100;;EMAPA:16169;;EMAPA:16271;;EMAPA_RETIRED:16271;;TAO:0000787;;ZFA:0000787
|is_a=UBERON:0005253;;UBERON:0010313
|synonym="head mesenchyme from cranial neural crest" EXACT [];;"head mesenchyme from neural crest" EXACT [EHDAA2:0000735]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0003099
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007213
|is_a=UBERON:0005253 ;;UBERON:0014387
|is_obsolete=
|located_in=
|located_in=
|name=mesenchyme derived from head neural crest
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="head mesenchyme from cranial neural crest" EXACT [];;"head mesenchyme from neural crest" EXACT [EHDAA2:0000735]
|union_of=
|xref=EFO:0003572;;EHDAA2:0000735;;EMAPA:16100;;EMAPA:16169;;EMAPA:16271;;EMAPA_RETIRED:16271;;TAO:0000787;;ZFA:0000787
}}
}}

Latest revision as of 18:00, 12 September 2014

Name:mesenchyme derived from head neural crest
Namespace:FANTOM
Xrefs:
links:

EFO:0003572
EHDAA2:0000735
EMAPA:16100
EMAPA:16169
EMAPA:16271
EMAPA_RETIRED:16271
TAO:0000787

ZFA:0000787
Synonyms: "head mesenchyme from cranial neural crest" EXACT []
"head mesenchyme from neural crest" EXACT [EHDAA2:0000735]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005253(head mesenchyme),UBERON:0014387(mesenchyme derived from neural crest)
develops_from:UBERON:0003099(cranial neural crest)



Children

is a:UBERON:0003314 (eye mesenchyme),UBERON:0005565 (facio-acoustic neural crest),UBERON:0009501 (mesenchyme of fronto-nasal process),UBERON:0009920 (optic neural crest),UBERON:0010258 (mesenchyme from rhombencephalic neural crest)
develops from:UBERON:0001777 (substantia propria of cornea),UBERON:0009204 (medial nasal process mesenchyme),UBERON:0009501 (mesenchyme of fronto-nasal process)
part of:UBERON:0009920 (optic neural crest),UBERON:0010258 (mesenchyme from rhombencephalic neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007213 (mesenchyme derived from head neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_7f1885a203ac023ca1c02d84054c5654p14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_7f1885a203ac023ca1c02d84054c5654p14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_cef9998ad046e278d87fa22dd7bc1c31p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_cef9998ad046e278d87fa22dd7bc1c31p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_cef9998ad046e278d87fa22dd7bc1c31p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_cef9998ad046e278d87fa22dd7bc1c31p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_cef9998ad046e278d87fa22dd7bc1c31p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_cef9998ad046e278d87fa22dd7bc1c31p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_cef9998ad046e278d87fa22dd7bc1c31p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_cef9998ad046e278d87fa22dd7bc1c31p@chr8:57353655..57353662, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_c91370692f2c86dbbfce11bf607eb7e7p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_c91370692f2c86dbbfce11bf607eb7e7p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_c91370692f2c86dbbfce11bf607eb7e7p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_c91370692f2c86dbbfce11bf607eb7e7p14@MAB21L2
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_fec87e16f418d96a3c7e3b531a4f9257p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_fec87e16f418d96a3c7e3b531a4f9257p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_a48374c98ce126e40d2231070c68ebffp9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_a48374c98ce126e40d2231070c68ebffp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_a48374c98ce126e40d2231070c68ebffp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_a48374c98ce126e40d2231070c68ebffp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_a48374c98ce126e40d2231070c68ebffp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_a48374c98ce126e40d2231070c68ebffp@chr8:57354278..57354286, +
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_f8307549aae9e68846bb672a575d712bp@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_f8307549aae9e68846bb672a575d712bp@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_321a967aa48b3572490a0bb0d533c399p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_321a967aa48b3572490a0bb0d533c399p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_321a967aa48b3572490a0bb0d533c399p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_321a967aa48b3572490a0bb0d533c399p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_321a967aa48b3572490a0bb0d533c399p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_321a967aa48b3572490a0bb0d533c399p@chr5:75913767..75913778, -
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_e4b3596ab7c007acd50958879d19d870p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_e4b3596ab7c007acd50958879d19d870p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_e4b3596ab7c007acd50958879d19d870p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_e4b3596ab7c007acd50958879d19d870p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_56d93f71b2390ef0cd1ccf5b74897c7dp@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_56d93f71b2390ef0cd1ccf5b74897c7dp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_56d93f71b2390ef0cd1ccf5b74897c7dp@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_56d93f71b2390ef0cd1ccf5b74897c7dp@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_56d93f71b2390ef0cd1ccf5b74897c7dp@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_56d93f71b2390ef0cd1ccf5b74897c7dp@chr8:57354143..57354152, +
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_4c5efdbbb8b4655b0b56b62a4e203c99p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_4c5efdbbb8b4655b0b56b62a4e203c99p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_4c5efdbbb8b4655b0b56b62a4e203c99p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_4c5efdbbb8b4655b0b56b62a4e203c99p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_4c5efdbbb8b4655b0b56b62a4e203c99p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_4c5efdbbb8b4655b0b56b62a4e203c99p12@FAM65C
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_af693417442f36506c6f03e9b8fed506p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_af693417442f36506c6f03e9b8fed506p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_af693417442f36506c6f03e9b8fed506p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_af693417442f36506c6f03e9b8fed506p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_318ce16d1dcf9ce30b9025af35f7d8d8p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_318ce16d1dcf9ce30b9025af35f7d8d8p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_318ce16d1dcf9ce30b9025af35f7d8d8p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_318ce16d1dcf9ce30b9025af35f7d8d8p@chr6:46190219..46190230, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_6d857da425cf3dc5f05572f0fd957fdap4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_6d857da425cf3dc5f05572f0fd957fdap4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_6d857da425cf3dc5f05572f0fd957fdap5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_6d857da425cf3dc5f05572f0fd957fdap@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_6d857da425cf3dc5f05572f0fd957fdap@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_6d857da425cf3dc5f05572f0fd957fdap5@PENK
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_8709108a597746c86e71907e017ba827p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_8709108a597746c86e71907e017ba827p9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_9f5f35d97898c793805142ba917538f2p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_9f5f35d97898c793805142ba917538f2p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_d8aafbb887fc15582e1b605c409146ddp@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_d8aafbb887fc15582e1b605c409146ddp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_d8aafbb887fc15582e1b605c409146ddp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_d8aafbb887fc15582e1b605c409146ddp@chr8:57353676..57353688, -
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_9ffd4c9712bac81df291c5721e55f2d0p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_9ffd4c9712bac81df291c5721e55f2d0p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_9ffd4c9712bac81df291c5721e55f2d0p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_9ffd4c9712bac81df291c5721e55f2d0p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_9ffd4c9712bac81df291c5721e55f2d0p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_9ffd4c9712bac81df291c5721e55f2d0p4@PLAC1
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_b0f12a1298b3c3c0ee2b29289ff3326ap@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_b0f12a1298b3c3c0ee2b29289ff3326ap@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_b0f12a1298b3c3c0ee2b29289ff3326ap@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_b0f12a1298b3c3c0ee2b29289ff3326ap@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_b0f12a1298b3c3c0ee2b29289ff3326ap@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_b0f12a1298b3c3c0ee2b29289ff3326ap@chr8:57353982..57353991, -
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_5b6772f2e1bc972be802d22e2f791be2p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_5b6772f2e1bc972be802d22e2f791be2p7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_5b6772f2e1bc972be802d22e2f791be2p10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_5b6772f2e1bc972be802d22e2f791be2p7@SHOX2
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_cc29cba33d71c39e87a99080b9a8eccfp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_cc29cba33d71c39e87a99080b9a8eccfp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_cc29cba33d71c39e87a99080b9a8eccfp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_cc29cba33d71c39e87a99080b9a8eccfp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_cc29cba33d71c39e87a99080b9a8eccfp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_cc29cba33d71c39e87a99080b9a8eccfp@chr17:79071218..79071221, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_22456672f6200d3f57ad0503573d685ap@chr1:21904551..21904569, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_22456672f6200d3f57ad0503573d685ap@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_9e5ff387fdd6dc8d1ef9751c64b2a9a7p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_9e5ff387fdd6dc8d1ef9751c64b2a9a7p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_9e5ff387fdd6dc8d1ef9751c64b2a9a7p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_9e5ff387fdd6dc8d1ef9751c64b2a9a7p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_9e5ff387fdd6dc8d1ef9751c64b2a9a7p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_9e5ff387fdd6dc8d1ef9751c64b2a9a7p18@MEF2D
4.2e-29FFCP PHASE1:Hg19::chr13:36046127..36046134,+#_9a13021ef09c6e35e4b95211fda2ca60p@chr13:36046127..36046134, +
4.2e-29FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_9a13021ef09c6e35e4b95211fda2ca60p11@MAB21L2

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