UBERON:0007616: Difference between revisions
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|located_in= | |located_in= | ||
|name=layer of synovial tissue | |name=layer of synovial tissue | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 18:02, 12 September 2014
| Name: | layer of synovial tissue | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A thin, loose vascular connective tissue that makes up the membranes surrounding joints and the sheaths protecting tendons (particularly flexor tendons in the hands and feet) where they pass over bony prominences. Synovial tissue contains synovial cells, which secrete a viscous liquid called synovial fluid; this liquid contains protein and hyaluronic acid and serves as a lubricant and nutrient for the joint cartilage surfaces[BTO]. Synovial tissue can be found in tendons (tissues that connect muscle to bone), bursae (fluid-filled, cushioning sacs found in spaces between tendons, ligaments, and bones), and the cavity (hollow enclosed area) that separates the bones of a freely movable joint, such as the knee or elbow[BTO]." [BTO:0001338, http://www.britannica.com/EBchecked/topic/578563/synovial-tissue] | ||
| Xrefs: |
| ||
| Synonyms: |
"stratum synoviale" NARROW [FMA:TA] "synovial layer" NARROW [FMA:66762] "synovial membrane" NARROW [FMA:66762] "synovial tissue" RELATED [BTO:0001338] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000042(serous membrane),UBERON:0002384(connective tissue) |
|---|
Children
| is a: | UBERON:0002018 (synovial membrane of synovial joint) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11291-117A4 (Synoviocyte, donor1)
- 11368-117I9 (Synoviocyte, donor2)
- 11440-118H9 (Synoviocyte, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007616 (layer of synovial tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.24e-88 | FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_4ba04bb5ef159f5743a6c4289d8050cd | p31@SEMA3C |
| 6.24e-88 | FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_4ba04bb5ef159f5743a6c4289d8050cd | p31@SEMA3C |
| 1.71e-66 | FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_0c58920748ec767ed9dbb37ce5792dd3 | p@chr18:22150956..22150983, + |
| 1.71e-66 | FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_0c58920748ec767ed9dbb37ce5792dd3 | p@chr18:22150956..22150983, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_9179be04ca5e8bfeef059cbffd2df4af | p@chr2:181751144..181751146, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_9179be04ca5e8bfeef059cbffd2df4af | p@chr1:172134736..172134739, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_9179be04ca5e8bfeef059cbffd2df4af | p@chr2:181751144..181751146, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_9179be04ca5e8bfeef059cbffd2df4af | p@chr12:130786785..130786827, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_9179be04ca5e8bfeef059cbffd2df4af | p@chr1:172134736..172134739, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_9179be04ca5e8bfeef059cbffd2df4af | p9@SKOR1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_9179be04ca5e8bfeef059cbffd2df4af | p@chr1:172134755..172134764, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_9179be04ca5e8bfeef059cbffd2df4af | p9@SKOR1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_9179be04ca5e8bfeef059cbffd2df4af | p@chr1:172134755..172134764, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_9179be04ca5e8bfeef059cbffd2df4af | p1@ENST00000517363 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_9179be04ca5e8bfeef059cbffd2df4af | p1@ENST00000517363 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_9179be04ca5e8bfeef059cbffd2df4af | p@chr12:130786785..130786827, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_9179be04ca5e8bfeef059cbffd2df4af | p@chr1:172134667..172134711, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_9179be04ca5e8bfeef059cbffd2df4af | p@chr1:172134667..172134711, + |
| 1.68e-53 | FFCP PHASE2:Hg19::chr8:25337208..25337219,+#_791176a28d38f48ca045e89c2a170ce2 | p5@CDCA2 |
| 1.68e-53 | FFCP PHASE1:Hg19::chr8:25337208..25337219,+#_791176a28d38f48ca045e89c2a170ce2 | p5@CDCA2 |
| 2.19e-53 | FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_5c314b46bbce52a151a050fe47c08fca | p@chr2:242009429..242009432, + |
| 2.19e-53 | FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_5c314b46bbce52a151a050fe47c08fca | p@chr2:242009429..242009432, + |
| 2.87e-53 | FFCP PHASE2:Hg19::chr12:131476821..131476831,-#_c1d1ae6891579e9ad2f6577d78a207d0 | p@chr12:131476821..131476831, - |
| 2.87e-53 | FFCP PHASE1:Hg19::chr12:131476821..131476831,-#_c1d1ae6891579e9ad2f6577d78a207d0 | p@chr12:131476821..131476831, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chrY:58884631..58884640,+#_7d591535ddc2caeeed1dde6ee472e4e7 | p@chrY:58884631..58884640, + |
| 1.22e-44 | FFCP PHASE1:Hg19::chrY:58884631..58884640,+#_7d591535ddc2caeeed1dde6ee472e4e7 | p@chrY:58884631..58884640, + |
| 1.8e-38 | FFCP PHASE2:Hg19::chr1:142537706..142537723,-#_2245e88174e4b8ad661f3ddad0a10a82 | p@chr1:142537706..142537723, - |
| 1.8e-38 | FFCP PHASE1:Hg19::chr1:142537706..142537723,-#_2245e88174e4b8ad661f3ddad0a10a82 | p@chr1:142537706..142537723, - |
| 1.85e-36 | FFCP PHASE2:Hg19::chr10:131634104..131634108,-#_f0302b3c0bc369a01e3bc21648349ed8 | p@chr10:131634104..131634108, - |
| 1.85e-36 | FFCP PHASE1:Hg19::chr10:131634104..131634108,-#_f0302b3c0bc369a01e3bc21648349ed8 | p@chr10:131634104..131634108, - |
| 3.33e-34 | FFCP PHASE2:Hg19::chr17:9066265..9066271,+#_0294bd4824ac9edefdb5e90b4250658f | p@chr17:9066265..9066271, + |
| 3.33e-34 | FFCP PHASE1:Hg19::chr17:9066265..9066271,+#_0294bd4824ac9edefdb5e90b4250658f | p@chr17:9066265..9066271, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:54379011..54379016,+#_8d317435e8ab0b433aa9805fe4bd2d5e | p15@HOXC10 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:91435143..91435151,-#_8d317435e8ab0b433aa9805fe4bd2d5e | p@chr12:91435143..91435151, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:135140510..135140524,-#_8d317435e8ab0b433aa9805fe4bd2d5e | p@chr10:135140510..135140524, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr15:68118244..68118272,+#_8d317435e8ab0b433aa9805fe4bd2d5e | p@chr15:68118244..68118272, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:91435143..91435151,-#_8d317435e8ab0b433aa9805fe4bd2d5e | p@chr12:91435143..91435151, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:130646534..130646542,+#_8d317435e8ab0b433aa9805fe4bd2d5e | p5@FZD10 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:54379011..54379016,+#_8d317435e8ab0b433aa9805fe4bd2d5e | p15@HOXC10 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:1043105..1043109,+#_8d317435e8ab0b433aa9805fe4bd2d5e | p@chr5:1043105..1043109, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr15:68124311..68124318,+#_8d317435e8ab0b433aa9805fe4bd2d5e | p@chr15:68124311..68124318, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:135140510..135140524,-#_8d317435e8ab0b433aa9805fe4bd2d5e | p@chr10:135140510..135140524, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:1043105..1043109,+#_8d317435e8ab0b433aa9805fe4bd2d5e | p@chr5:1043105..1043109, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:78774585..78774589,-#_8d317435e8ab0b433aa9805fe4bd2d5e | p@chr8:78774585..78774589, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr15:68124311..68124318,+#_8d317435e8ab0b433aa9805fe4bd2d5e | p@chr15:68124311..68124318, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:78774585..78774589,-#_8d317435e8ab0b433aa9805fe4bd2d5e | p@chr8:78774585..78774589, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:130646534..130646542,+#_8d317435e8ab0b433aa9805fe4bd2d5e | p5@FZD10 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:139010162..139010169,+#_8d317435e8ab0b433aa9805fe4bd2d5e | p1@LOC641364 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:37411648..37411657,-#_8d317435e8ab0b433aa9805fe4bd2d5e | p1@ENST00000519738 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:139010162..139010169,+#_8d317435e8ab0b433aa9805fe4bd2d5e | p1@LOC641364 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:37411648..37411657,-#_8d317435e8ab0b433aa9805fe4bd2d5e | p1@ENST00000519738 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr15:68118244..68118272,+#_8d317435e8ab0b433aa9805fe4bd2d5e | p@chr15:68118244..68118272, + |
| 5.51e-34 | FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_1bc33b9555977ebd5d959d0f8cf5e5fb | p6@ACAN |
| 5.51e-34 | FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_1bc33b9555977ebd5d959d0f8cf5e5fb | p6@ACAN |
| 5.96e-34 | FFCP PHASE2:Hg19::chr13:73102090..73102097,-#_747479f710ac026ab1adf3433c94f0bc | p@chr13:73102090..73102097, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr12:54366780..54366791,+#_747479f710ac026ab1adf3433c94f0bc | p12@HOXC11 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:42072877..42072881,-#_747479f710ac026ab1adf3433c94f0bc | p11@C6orf132 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:42072877..42072881,-#_747479f710ac026ab1adf3433c94f0bc | p11@C6orf132 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr12:54366780..54366791,+#_747479f710ac026ab1adf3433c94f0bc | p12@HOXC11 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr15:68117844..68117858,+#_747479f710ac026ab1adf3433c94f0bc | p3@SKOR1 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr15:68117844..68117858,+#_747479f710ac026ab1adf3433c94f0bc | p3@SKOR1 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr17:63705566..63705573,-#_747479f710ac026ab1adf3433c94f0bc | p@chr17:63705566..63705573, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr13:73102090..73102097,-#_747479f710ac026ab1adf3433c94f0bc | p@chr13:73102090..73102097, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr17:63705566..63705573,-#_747479f710ac026ab1adf3433c94f0bc | p@chr17:63705566..63705573, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_747479f710ac026ab1adf3433c94f0bc | p@chr1:172145683..172145699, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_747479f710ac026ab1adf3433c94f0bc | p@chr1:172145683..172145699, + |
| 7.7e-34 | FFCP PHASE2:Hg19::chrY:13450855..13450866,+#_cffcf865861eb1b2f88aaf1483cb2f13 | p@chrY:13450855..13450866, + |
| 7.7e-34 | FFCP PHASE1:Hg19::chrY:13450855..13450866,+#_cffcf865861eb1b2f88aaf1483cb2f13 | p@chrY:13450855..13450866, + |
| 1.46e-31 | FFCP PHASE2:Hg19::chr19:18718172..18718197,+#_ad27575092fcf6f43a25c22e5808aa37 | p@chr19:18718172..18718197, + |
| 1.46e-31 | FFCP PHASE1:Hg19::chr19:18718172..18718197,+#_ad27575092fcf6f43a25c22e5808aa37 | p@chr19:18718172..18718197, + |
| 1.71e-30 | FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_c24624fdbd4882090b133bad9b655de2 | p9@ERG |
| 1.71e-30 | FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_c24624fdbd4882090b133bad9b655de2 | p9@ERG |
| 2.3e-30 | FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_462200d9cf149a0c7b9fa39bc1f412d6 | p8@ACAN |
| 2.3e-30 | FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_462200d9cf149a0c7b9fa39bc1f412d6 | p@chr1:186273262..186273282, + |
| 2.3e-30 | FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_462200d9cf149a0c7b9fa39bc1f412d6 | p8@ACAN |
| 2.3e-30 | FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_462200d9cf149a0c7b9fa39bc1f412d6 | p@chr1:186273262..186273282, + |
| 7.54e-30 | FFCP PHASE1:Hg19::chr1:186276427..186276448,+#_284761ba742126d7015ed678e6e8c62b | p@chr1:186276427..186276448, + |
| 7.54e-30 | FFCP PHASE2:Hg19::chr1:186276427..186276448,+#_284761ba742126d7015ed678e6e8c62b | p@chr1:186276427..186276448, + |
| 8.12e-28 | FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_f8c192613333686f73a604d598872f4d | p21@SEMA3C |
| 8.12e-28 | FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_f8c192613333686f73a604d598872f4d | p21@SEMA3C |
| 1.39e-27 | FFCP PHASE2:Hg19::chr20:48160907..48160918,-#_456aaec1854f8f6f661c87dd7ea14d8a | p@chr20:48160907..48160918, - |
| 1.39e-27 | FFCP PHASE1:Hg19::chr20:48160907..48160918,-#_456aaec1854f8f6f661c87dd7ea14d8a | p@chr20:48160907..48160918, - |
| 1.82e-27 | FFCP PHASE1:Hg19::chr20:43343646..43343655,+#_dee9056171bdfbd4aef6b8b1f7024f97 | p7@WISP2 |
| 1.82e-27 | FFCP PHASE2:Hg19::chr3:156877038..156877058,-#_dee9056171bdfbd4aef6b8b1f7024f97 | p35@CCNL1 |
| 1.82e-27 | FFCP PHASE1:Hg19::chr3:156877038..156877058,-#_dee9056171bdfbd4aef6b8b1f7024f97 | p35@CCNL1 |
| 1.82e-27 | FFCP PHASE2:Hg19::chr1:142537912..142537938,-#_dee9056171bdfbd4aef6b8b1f7024f97 | p@chr1:142537912..142537938, - |
| 1.82e-27 | FFCP PHASE1:Hg19::chr1:142537912..142537938,-#_dee9056171bdfbd4aef6b8b1f7024f97 | p@chr1:142537912..142537938, - |
| 1.82e-27 | FFCP PHASE2:Hg19::chr20:43343646..43343655,+#_dee9056171bdfbd4aef6b8b1f7024f97 | p7@WISP2 |
| 2.08e-27 | FFCP PHASE2:Hg19::chr6:1609602..1609636,-#_31449de498bb15faabcc7949d294d829 | p@chr6:1609602..1609636, - |
| 2.08e-27 | FFCP PHASE1:Hg19::chr6:1609602..1609636,-#_31449de498bb15faabcc7949d294d829 | p@chr6:1609602..1609636, - |
| 2.08e-27 | FFCP PHASE2:Hg19::chr1:142539672..142539687,-#_31449de498bb15faabcc7949d294d829 | p@chr1:142539672..142539687, - |
| 2.08e-27 | FFCP PHASE1:Hg19::chr1:142539672..142539687,-#_31449de498bb15faabcc7949d294d829 | p@chr1:142539672..142539687, - |
| 2.38e-27 | FFCP PHASE2:Hg19::chr21:39705323..39705334,-#_114982e3e6ce383e1e2d1b9bcdf18b8f | p2@ENST00000436845 |
| 2.38e-27 | FFCP PHASE1:Hg19::chr21:39705323..39705334,-#_114982e3e6ce383e1e2d1b9bcdf18b8f | p2@ENST00000436845 |
| 3.11e-27 | FFCP PHASE2:Hg19::chr6:31918397..31918412,+#_040659ff6975b9377d3384ab48eedfd8 | p15@CFB |
| 3.11e-27 | FFCP PHASE2:Hg19::chr16:15680784..15680797,+#_040659ff6975b9377d3384ab48eedfd8 | p@chr16:15680784..15680797, + |
| 3.11e-27 | FFCP PHASE1:Hg19::chr6:31918397..31918412,+#_040659ff6975b9377d3384ab48eedfd8 | p15@CFB |
| 3.11e-27 | FFCP PHASE1:Hg19::chr16:15680784..15680797,+#_040659ff6975b9377d3384ab48eedfd8 | p@chr16:15680784..15680797, + |
| 4.07e-27 | FFCP PHASE1:Hg19::chr8:70476088..70476102,+#_6926cabea427a3b8cf1b7e598aa29d0d | p21@SULF1 |
| 4.07e-27 | FFCP PHASE2:Hg19::chr8:70476088..70476102,+#_6926cabea427a3b8cf1b7e598aa29d0d | p21@SULF1 |
