UBERON:0009662: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Nucleus located within the hindbrain." [ZFIN:curator] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0009662 | |||
|is_a=UBERON:0002308 ;;UBERON:0010314 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=hindbrain nucleus | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002028 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=TAO:0002177;;ZFA:0001658 | |||
}} | }} | ||
Latest revision as of 18:06, 12 September 2014
| Name: | hindbrain nucleus | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Nucleus located within the hindbrain." [ZFIN:curator] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002308(nucleus of brain),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0002028(hindbrain) |
Children
| is a: | UBERON:0002148 (locus ceruleus) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10165-103B3 (locus coeruleus, adult, donor10252)
- 10182-103D2 (locus coeruleus - adult, donor10196)
- 10362-105F2 (locus coeruleus, newborn, donor10223)
- 10375-105G6 (locus coeruleus, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009662 (hindbrain nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:237146889..237146895,-#_ade460eb38827ef35242589ba584dea2 | p@chr2:237146889..237146895, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:237146889..237146895,-#_ade460eb38827ef35242589ba584dea2 | p@chr2:237146889..237146895, - |
| 4.22e-98 | FFCP PHASE1:Hg19::chr16:49601912..49601949,-#_59544ad90f0e5c9f8d0b9a6dcbe3fba7 | p@chr16:49601912..49601949, - |
| 4.22e-98 | FFCP PHASE2:Hg19::chr16:49601912..49601949,-#_59544ad90f0e5c9f8d0b9a6dcbe3fba7 | p@chr16:49601912..49601949, - |
| 1.16e-78 | FFCP PHASE1:Hg19::chr2:108602711..108602722,+#_aeee0bffd880414d4d4ee03b74fed80d | p3@SLC5A7 |
| 1.16e-78 | FFCP PHASE2:Hg19::chr2:108602711..108602722,+#_aeee0bffd880414d4d4ee03b74fed80d | p3@SLC5A7 |
| 2.84e-66 | FFCP PHASE2:Hg19::chr17:7559346..7559354,+#_8ee071ca8d6d088b201c4c6a0254ca51 | p@chr17:7559346..7559354, + |
| 2.84e-66 | FFCP PHASE1:Hg19::chr17:7559346..7559354,+#_8ee071ca8d6d088b201c4c6a0254ca51 | p@chr17:7559346..7559354, + |
| 3.58e-57 | FFCP PHASE2:Hg19::chr2:234077664..234077672,+#_1b2c7090021760bb3d81132f0d6b787f | p@chr2:234077664..234077672, + |
| 3.58e-57 | FFCP PHASE1:Hg19::chr2:234077664..234077672,+#_1b2c7090021760bb3d81132f0d6b787f | p@chr2:234077664..234077672, + |
| 6.36e-57 | FFCP PHASE1:Hg19::chr9:87427873..87427884,+#_4689ca8d541c191ef8124561d0abf707 | p67@NTRK2 |
| 6.36e-57 | FFCP PHASE2:Hg19::chr9:87427873..87427884,+#_4689ca8d541c191ef8124561d0abf707 | p67@NTRK2 |
| 8.47e-57 | FFCP PHASE1:Hg19::chr5:75379091..75379100,+#_0e3b9383ac1c4a00f607332c1c58dd7c | p6@SV2C |
| 8.47e-57 | FFCP PHASE2:Hg19::chr11:30751827..30751838,+#_0e3b9383ac1c4a00f607332c1c58dd7c | p@chr11:30751827..30751838, + |
| 8.47e-57 | FFCP PHASE2:Hg19::chr5:75379091..75379100,+#_0e3b9383ac1c4a00f607332c1c58dd7c | p6@SV2C |
| 8.47e-57 | FFCP PHASE1:Hg19::chr11:30751827..30751838,+#_0e3b9383ac1c4a00f607332c1c58dd7c | p@chr11:30751827..30751838, + |
| 1.13e-56 | FFCP PHASE2:Hg19::chr4:117675601..117675614,+#_7c35f826c253b1563a0a2a693c32294b | p@chr4:117675601..117675614, + |
| 1.13e-56 | FFCP PHASE1:Hg19::chr4:117675601..117675614,+#_7c35f826c253b1563a0a2a693c32294b | p@chr4:117675601..117675614, + |
| 1.5e-56 | FFCP PHASE1:Hg19::chr9:135089670..135089681,-#_724af14ce81274208a5901ba6e16f670 | p@chr9:135089670..135089681, - |
| 1.5e-56 | FFCP PHASE2:Hg19::chr10:133878269..133878278,+#_724af14ce81274208a5901ba6e16f670 | p@chr10:133878269..133878278, + |
| 1.5e-56 | FFCP PHASE2:Hg19::chr9:135089670..135089681,-#_724af14ce81274208a5901ba6e16f670 | p@chr9:135089670..135089681, - |
| 1.5e-56 | FFCP PHASE1:Hg19::chr10:133878269..133878278,+#_724af14ce81274208a5901ba6e16f670 | p@chr10:133878269..133878278, + |
| 2.0e-56 | FFCP PHASE2:Hg19::chr7:94297970..94297982,+#_c3ed30857ff242e572791e8650d571e1 | p@chr7:94297970..94297982, + |
| 2.0e-56 | FFCP PHASE1:Hg19::chr7:94297970..94297982,+#_c3ed30857ff242e572791e8650d571e1 | p@chr7:94297970..94297982, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr5:71505323..71505333,+#_6c3dfec5f7a65072282df8b1bbc59833 | p@chr5:71505323..71505333, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr5:71505323..71505333,+#_6c3dfec5f7a65072282df8b1bbc59833 | p@chr5:71505323..71505333, + |
| 1.88e-50 | FFCP PHASE2:Hg19::chr18:5577640..5577652,-#_7ebdd3095b1fac5b89422da3f388d9fd | p14@EPB41L3 |
| 1.88e-50 | FFCP PHASE1:Hg19::chr18:5577640..5577652,-#_7ebdd3095b1fac5b89422da3f388d9fd | p14@EPB41L3 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr11:20621167..20621170,+#_af9d69aa86385ac005378d0c3534ecb4 | p6@SLC6A5 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:114303795..114303800,+#_af9d69aa86385ac005378d0c3534ecb4 | p51@ANK2 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr11:20621167..20621170,+#_af9d69aa86385ac005378d0c3534ecb4 | p6@SLC6A5 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:114303795..114303800,+#_af9d69aa86385ac005378d0c3534ecb4 | p51@ANK2 |
| 4.0e-50 | FFCP PHASE1:Hg19::chr22:37213554..37213565,-#_a13b98059e0b06a6ab03a575a52e46f9 | p4@PVALB |
| 4.0e-50 | FFCP PHASE2:Hg19::chr22:37213554..37213565,-#_a13b98059e0b06a6ab03a575a52e46f9 | p4@PVALB |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:218873244..218873256,-#_ca9884e8871284a8f932caa1c74246e8 | p@chr2:218873244..218873256, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr2:218873244..218873256,-#_ca9884e8871284a8f932caa1c74246e8 | p@chr2:218873244..218873256, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:56820018..56820029,+#_ca9884e8871284a8f932caa1c74246e8 | p16@BEND6 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:56820018..56820029,+#_ca9884e8871284a8f932caa1c74246e8 | p16@BEND6 |
| 5.15e-50 | FFCP PHASE2:Hg19::chr3:183979132..183979143,-#_1dd4d74eccbd5ead14e0696f321f89e7 | p8@CAMK2N2 |
| 5.15e-50 | FFCP PHASE1:Hg19::chr3:183979132..183979143,-#_1dd4d74eccbd5ead14e0696f321f89e7 | p8@CAMK2N2 |
| 6.61e-50 | FFCP PHASE2:Hg19::chr8:82354790..82354800,-#_fff2055ce42a4037838c9ebed9a8a220 | p@chr8:82354790..82354800, - |
| 6.61e-50 | FFCP PHASE1:Hg19::chr11:81982984..81982991,+#_fff2055ce42a4037838c9ebed9a8a220 | p@chr11:81982984..81982991, + |
| 6.61e-50 | FFCP PHASE2:Hg19::chr22:26565113..26565124,+#_fff2055ce42a4037838c9ebed9a8a220 | p7@SEZ6L |
| 6.61e-50 | FFCP PHASE2:Hg19::chr11:81982984..81982991,+#_fff2055ce42a4037838c9ebed9a8a220 | p@chr11:81982984..81982991, + |
| 6.61e-50 | FFCP PHASE1:Hg19::chr8:82354790..82354800,-#_fff2055ce42a4037838c9ebed9a8a220 | p@chr8:82354790..82354800, - |
| 6.61e-50 | FFCP PHASE1:Hg19::chr22:26565113..26565124,+#_fff2055ce42a4037838c9ebed9a8a220 | p7@SEZ6L |
| 8.5e-50 | FFCP PHASE1:Hg19::chr1:160113171..160113182,+#_635c76a521dc3d3dd9ddeb26e8ef67da | p@chr1:160113171..160113182, + |
| 8.5e-50 | FFCP PHASE2:Hg19::chr1:160113171..160113182,+#_635c76a521dc3d3dd9ddeb26e8ef67da | p@chr1:160113171..160113182, + |
| 1.4e-49 | FFCP PHASE1:Hg19::chr6:55039307..55039326,+#_e9ea028236db438b50ed79e2a6907a37 | p1@HCRTR2 |
| 1.4e-49 | FFCP PHASE2:Hg19::chr6:55039307..55039326,+#_e9ea028236db438b50ed79e2a6907a37 | p1@HCRTR2 |
| 1.8e-49 | FFCP PHASE1:Hg19::chr8:23127683..23127694,+#_3c4031f5459d29a0114de3b505bb1235 | p8@R3HCC1 |
| 1.8e-49 | FFCP PHASE2:Hg19::chr8:23127683..23127694,+#_3c4031f5459d29a0114de3b505bb1235 | p8@R3HCC1 |
| 3.19e-45 | FFCP PHASE2:Hg19::chr15:60296481..60296492,+#_86353d6a4f1eb6343f20170ecd049695 | p7@FOXB1 |
| 3.19e-45 | FFCP PHASE1:Hg19::chr15:60296481..60296492,+#_86353d6a4f1eb6343f20170ecd049695 | p7@FOXB1 |
| 5.0e-45 | FFCP PHASE2:Hg19::chr3:58372039..58372043,+#_feeb524ae30f0667c34e4d203efee746 | p@chr3:58372039..58372043, + |
| 5.0e-45 | FFCP PHASE1:Hg19::chr3:58372039..58372043,+#_feeb524ae30f0667c34e4d203efee746 | p@chr3:58372039..58372043, + |
| 7.83e-45 | FFCP PHASE1:Hg19::chr1:160112787..160112798,+#_984226f8789448bdf78e0a6f6d48bcbd | p12@ATP1A2 |
| 7.83e-45 | FFCP PHASE2:Hg19::chr1:160112787..160112798,+#_984226f8789448bdf78e0a6f6d48bcbd | p12@ATP1A2 |
| 9.79e-45 | FFCP PHASE2:Hg19::chr22:29885906..29885916,+#_a2e7686aeaa471904eebd1b417622540 | p@chr22:29885906..29885916, + |
| 9.79e-45 | FFCP PHASE1:Hg19::chr8:28748765..28748785,+#_a2e7686aeaa471904eebd1b417622540 | p10@HMBOX1 |
| 9.79e-45 | FFCP PHASE2:Hg19::chr8:28748765..28748785,+#_a2e7686aeaa471904eebd1b417622540 | p10@HMBOX1 |
| 9.79e-45 | FFCP PHASE1:Hg19::chr22:29885906..29885916,+#_a2e7686aeaa471904eebd1b417622540 | p@chr22:29885906..29885916, + |
| 2.39e-44 | FFCP PHASE1:Hg19::chr17:42983463..42983466,-#_53392ba3df8c193334324b1028707466 | p45@GFAP |
| 2.39e-44 | FFCP PHASE2:Hg19::chr18:74691000..74691005,-#_53392ba3df8c193334324b1028707466 | p@chr18:74691000..74691005, - |
| 2.39e-44 | FFCP PHASE1:Hg19::chr18:74691000..74691005,-#_53392ba3df8c193334324b1028707466 | p@chr18:74691000..74691005, - |
| 2.39e-44 | FFCP PHASE2:Hg19::chr17:42983463..42983466,-#_53392ba3df8c193334324b1028707466 | p45@GFAP |
| 2.98e-44 | FFCP PHASE2:Hg19::chr7:12544061..12544073,+#_b5c1e5068903bab95658076e7016059b | p1@ENST00000424453 |
| 2.98e-44 | FFCP PHASE1:Hg19::chr7:12544061..12544073,+#_b5c1e5068903bab95658076e7016059b | p1@ENST00000424453 |
| 3.72e-44 | FFCP PHASE1:Hg19::chr13:70682590..70682601,-#_6011aef72c5f8ff82d088c0f18fedb69 | p3@KLHL1 |
| 3.72e-44 | FFCP PHASE2:Hg19::chr13:70682590..70682601,-#_6011aef72c5f8ff82d088c0f18fedb69 | p3@KLHL1 |
| 4.65e-44 | FFCP PHASE1:Hg19::chr8:81639875..81639889,-#_ae1ca5ee0bde93923bc5d7c0ef6201ca | p@chr8:81639875..81639889, - |
| 4.65e-44 | FFCP PHASE2:Hg19::chr8:81639875..81639889,-#_ae1ca5ee0bde93923bc5d7c0ef6201ca | p@chr8:81639875..81639889, - |
| 4.89e-41 | FFCP PHASE1:Hg19::chr12:72332618..72332632,+#_573016dd4d1bc3281a10ca1cd8241f52 | p1@TPH2 |
| 4.89e-41 | FFCP PHASE2:Hg19::chr12:72332618..72332632,+#_573016dd4d1bc3281a10ca1cd8241f52 | p1@TPH2 |
| 1.34e-40 | FFCP PHASE2:Hg19::chr14:62010202..62010207,-#_a3b3f2a48bbc28473194f741c72f9a9c | p@chr14:62010202..62010207, - |
| 1.34e-40 | FFCP PHASE1:Hg19::chr14:62010202..62010207,-#_a3b3f2a48bbc28473194f741c72f9a9c | p@chr14:62010202..62010207, - |
| 1.64e-40 | FFCP PHASE1:Hg19::chr8:24775490..24775500,+#_5768ebf1260016557e9fbd8116b11419 | p@chr8:24775490..24775500, + |
| 1.64e-40 | FFCP PHASE2:Hg19::chr8:24775490..24775500,+#_5768ebf1260016557e9fbd8116b11419 | p@chr8:24775490..24775500, + |
| 2.01e-40 | FFCP PHASE1:Hg19::chr4:67195068..67195099,-#_36add9fdd6245c9537eb41e7686f6cd3 | p@chr4:67195068..67195099, - |
| 2.01e-40 | FFCP PHASE2:Hg19::chr4:67195068..67195099,-#_36add9fdd6245c9537eb41e7686f6cd3 | p@chr4:67195068..67195099, - |
| 2.46e-40 | FFCP PHASE1:Hg19::chr19:35789028..35789044,+#_eada8d8a8a1bc3a4d72f41ee16d56e5c | p@chr19:35789028..35789044, + |
| 2.46e-40 | FFCP PHASE1:Hg19::chr1:155291376..155291428,+#_eada8d8a8a1bc3a4d72f41ee16d56e5c | p6@RUSC1 |
| 2.46e-40 | FFCP PHASE2:Hg19::chr19:35789028..35789044,+#_eada8d8a8a1bc3a4d72f41ee16d56e5c | p@chr19:35789028..35789044, + |
| 2.46e-40 | FFCP PHASE2:Hg19::chr1:155291376..155291428,+#_eada8d8a8a1bc3a4d72f41ee16d56e5c | p6@RUSC1 |
| 3.01e-40 | FFCP PHASE2:Hg19::chr1:24645071..24645074,+#_cedcd658e0ec705e884939eda232b6a2 | p@chr1:24645071..24645074, + |
| 3.01e-40 | FFCP PHASE1:Hg19::chr1:24645071..24645074,+#_cedcd658e0ec705e884939eda232b6a2 | p@chr1:24645071..24645074, + |
| 5.49e-40 | FFCP PHASE2:Hg19::chr6:33161034..33161047,-#_1ee012352585813184e61cded53b1ebc | p@chr6:33161034..33161047, - |
| 5.49e-40 | FFCP PHASE1:Hg19::chr2:179739649..179739660,-#_1ee012352585813184e61cded53b1ebc | p@chr2:179739649..179739660, - |
| 5.49e-40 | FFCP PHASE2:Hg19::chr2:179739649..179739660,-#_1ee012352585813184e61cded53b1ebc | p@chr2:179739649..179739660, - |
| 5.49e-40 | FFCP PHASE1:Hg19::chr6:33161034..33161047,-#_1ee012352585813184e61cded53b1ebc | p@chr6:33161034..33161047, - |
| 6.7e-40 | FFCP PHASE1:Hg19::chr6:151670422..151670433,+#_c65470d9660412a1028e2820eda87a62 | p@chr6:151670422..151670433, + |
| 6.7e-40 | FFCP PHASE2:Hg19::chr6:151670422..151670433,+#_c65470d9660412a1028e2820eda87a62 | p@chr6:151670422..151670433, + |
| 2.27e-37 | FFCP PHASE2:Hg19::chr11:121976070..121976081,-#_c463f958cacaa40630feca3eae0662ce | p4@ENST00000534195 |
| 2.27e-37 | FFCP PHASE1:Hg19::chr11:121976070..121976081,-#_c463f958cacaa40630feca3eae0662ce | p4@ENST00000534195 |
| 2.73e-37 | FFCP PHASE2:Hg19::chr2:25720514..25720525,-#_2fc79c6399f1fd6c37419e07d4641f4a | p16@DTNB |
| 2.73e-37 | FFCP PHASE1:Hg19::chr2:25720514..25720525,-#_2fc79c6399f1fd6c37419e07d4641f4a | p16@DTNB |
| 3.28e-37 | FFCP PHASE2:Hg19::chr17:11144580..11144595,+#_c61b705d77dbcd8d7da3285e1c4f9243 | p2@SHISA6 |
| 3.28e-37 | FFCP PHASE1:Hg19::chr17:11144580..11144595,+#_c61b705d77dbcd8d7da3285e1c4f9243 | p2@SHISA6 |
| 3.28e-37 | FFCP PHASE2:Hg19::chr17:42984370..42984375,-#_c61b705d77dbcd8d7da3285e1c4f9243 | p42@GFAP |
| 3.28e-37 | FFCP PHASE1:Hg19::chr17:42984370..42984375,-#_c61b705d77dbcd8d7da3285e1c4f9243 | p42@GFAP |
