UBERON:0010046: Difference between revisions
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|located_in= | |located_in= | ||
|name=entire pharyngeal arch associated mesenchyme | |name=entire pharyngeal arch associated mesenchyme | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0008814 | |part_of=UBERON:0008814 | ||
Latest revision as of 18:07, 12 September 2014
| Name: | entire pharyngeal arch associated mesenchyme | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The sum total of mesenchymal tissue in the pharyngeal arch region." [UBERON:cjm] | ||
| Xrefs: |
| ||
| Synonyms: |
"associated mesenchyme of pharyngeal region" EXACT [EMAPA:16550] "entire branchial arch associated mesenchyme" EXACT [UBERON:cjm] "pharyngeal arch associated mesenchyme" EXACT [EHDAA2:0001459] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004119(endoderm-derived structure),UBERON:0005291(embryonic tissue),UBERON:0007524(dense mesenchyme tissue),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0008814(pharyngeal arch system) |
Children
| part of: | UBERON:0009494 (pharyngeal arch mesenchymal region),UBERON:0010359 (pharyngeal arch mesenchyme from neural crest) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010046 (entire pharyngeal arch associated mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_2508a78257f676e7a0d635ba6c2b463c | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_2508a78257f676e7a0d635ba6c2b463c | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_700415fabca4ed2c1df673b701082f85 | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_700415fabca4ed2c1df673b701082f85 | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_700415fabca4ed2c1df673b701082f85 | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_700415fabca4ed2c1df673b701082f85 | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_700415fabca4ed2c1df673b701082f85 | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_700415fabca4ed2c1df673b701082f85 | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_700415fabca4ed2c1df673b701082f85 | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_700415fabca4ed2c1df673b701082f85 | p13@C17orf67 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_597df48b0c99b9dea0b0c154cd7150cc | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_597df48b0c99b9dea0b0c154cd7150cc | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_597df48b0c99b9dea0b0c154cd7150cc | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_597df48b0c99b9dea0b0c154cd7150cc | p14@MAB21L2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_72077ecc8cc0189cc9628f6767e82266 | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_72077ecc8cc0189cc9628f6767e82266 | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_2b915803edc2e92935266c9ccef2d23f | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_2b915803edc2e92935266c9ccef2d23f | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_2b915803edc2e92935266c9ccef2d23f | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_2b915803edc2e92935266c9ccef2d23f | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_2b915803edc2e92935266c9ccef2d23f | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_2b915803edc2e92935266c9ccef2d23f | p9@C17orf67 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_1fe46f818b83c8e39373db7b8f1703d5 | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_1fe46f818b83c8e39373db7b8f1703d5 | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_bf814cc8904a6bca2a8f800e32b980b8 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_bf814cc8904a6bca2a8f800e32b980b8 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_bf814cc8904a6bca2a8f800e32b980b8 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_bf814cc8904a6bca2a8f800e32b980b8 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_bf814cc8904a6bca2a8f800e32b980b8 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_bf814cc8904a6bca2a8f800e32b980b8 | p@chr5:75913767..75913778, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_6a5f132323d66ca717c33038b07e55a8 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_6a5f132323d66ca717c33038b07e55a8 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_6a5f132323d66ca717c33038b07e55a8 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_6a5f132323d66ca717c33038b07e55a8 | p23@FLT1 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_d2b016ae03339f258b1b363c18dac4f2 | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_d2b016ae03339f258b1b363c18dac4f2 | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_d2b016ae03339f258b1b363c18dac4f2 | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_d2b016ae03339f258b1b363c18dac4f2 | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_d2b016ae03339f258b1b363c18dac4f2 | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_d2b016ae03339f258b1b363c18dac4f2 | p@chr8:57353666..57353675, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_ff1a18c3b78f6c089acc1bae4bada67f | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_ff1a18c3b78f6c089acc1bae4bada67f | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_ff1a18c3b78f6c089acc1bae4bada67f | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_ff1a18c3b78f6c089acc1bae4bada67f | p8@LHX8 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_ff1a18c3b78f6c089acc1bae4bada67f | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_ff1a18c3b78f6c089acc1bae4bada67f | p8@LHX8 |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_4ec2c5b860fa7fe847be03718ba90655 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_4ec2c5b860fa7fe847be03718ba90655 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_4ec2c5b860fa7fe847be03718ba90655 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_4ec2c5b860fa7fe847be03718ba90655 | p@chr5:75912831..75912842, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_798b1df08e9dd317ac0daa2aa97fe1ce | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_798b1df08e9dd317ac0daa2aa97fe1ce | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_798b1df08e9dd317ac0daa2aa97fe1ce | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_798b1df08e9dd317ac0daa2aa97fe1ce | p@chr9:125165007..125165016, + |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_783cb357cb5276e291c3220a415d3bdd | p5@PENK |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_783cb357cb5276e291c3220a415d3bdd | p4@CPZ |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_783cb357cb5276e291c3220a415d3bdd | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_783cb357cb5276e291c3220a415d3bdd | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_783cb357cb5276e291c3220a415d3bdd | p5@PENK |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_783cb357cb5276e291c3220a415d3bdd | p@chr10:15760985..15760992, - |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_15af2a9daf426eebc45b1dba21a30522 | p9@SIX1 |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_15af2a9daf426eebc45b1dba21a30522 | p9@SIX1 |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_24130e3f59f1967a1f0625425991a776 | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_24130e3f59f1967a1f0625425991a776 | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_92a5fd56bec2fd9e89f4ee68d8131080 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_92a5fd56bec2fd9e89f4ee68d8131080 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_92a5fd56bec2fd9e89f4ee68d8131080 | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_92a5fd56bec2fd9e89f4ee68d8131080 | p@chr13:58291223..58291226, + |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_fa519bee7d8a65332929b0a0d3c685d4 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_fa519bee7d8a65332929b0a0d3c685d4 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_fa519bee7d8a65332929b0a0d3c685d4 | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_fa519bee7d8a65332929b0a0d3c685d4 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_fa519bee7d8a65332929b0a0d3c685d4 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_fa519bee7d8a65332929b0a0d3c685d4 | p4@PLAC1 |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_50a17815b2b9e2f7909b9397529cf8b0 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_50a17815b2b9e2f7909b9397529cf8b0 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_50a17815b2b9e2f7909b9397529cf8b0 | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_50a17815b2b9e2f7909b9397529cf8b0 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_50a17815b2b9e2f7909b9397529cf8b0 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_50a17815b2b9e2f7909b9397529cf8b0 | p@chr8:57354360..57354367, + |
| 9.99e-30 | FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_b0531acb1ece9f640a5ab8209a891638 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_b0531acb1ece9f640a5ab8209a891638 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_b0531acb1ece9f640a5ab8209a891638 | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_b0531acb1ece9f640a5ab8209a891638 | p7@SHOX2 |
| 1.33e-29 | FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_f07014532e8e2d2c418abd73afae91e6 | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_f07014532e8e2d2c418abd73afae91e6 | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_f07014532e8e2d2c418abd73afae91e6 | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_f07014532e8e2d2c418abd73afae91e6 | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_f07014532e8e2d2c418abd73afae91e6 | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_f07014532e8e2d2c418abd73afae91e6 | p@chr17:79071218..79071221, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_3e6a5970818fa30ef0e0c016a105790d | p@chr1:21904551..21904569, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_3e6a5970818fa30ef0e0c016a105790d | p@chr1:21904551..21904569, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_460839d67581b150e799cbf990a461b9 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_460839d67581b150e799cbf990a461b9 | p18@MEF2D |
| 3.16e-29 | FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_460839d67581b150e799cbf990a461b9 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_460839d67581b150e799cbf990a461b9 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_460839d67581b150e799cbf990a461b9 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_460839d67581b150e799cbf990a461b9 | p18@MEF2D |
| 4.2e-29 | FFCP PHASE2:Hg19::chr13:36046127..36046134,+#_804be6c0b7cf7dcddd2bd1d7488966c7 | p@chr13:36046127..36046134, + |
| 4.2e-29 | FFCP PHASE1:Hg19::chr1:75602768..75602785,+#_804be6c0b7cf7dcddd2bd1d7488966c7 | p@chr1:75602768..75602785, + |
