FFCP PHASE1:Hg19::chr10:52315129..52315145,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:52315129..52315145,- | |||
|coexpression_cluster_id=C33 | |coexpression_cluster_id=C33 | ||
|description=CAGE_peak_at_chr10:52315129..52315145,- | |description=CAGE_peak_at_chr10:52315129..52315145,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000764!8.15e-13!2;CL:0000765!8.15e-13!2;CL:0000050!8.15e-13!2;CL:0000038!8.15e-13!2;CL:0000558!8.15e-13!2;CL:0000547!8.15e-13!2;CL:0000549!8.15e-13!2;CL:0000550!8.15e-13!2;CL:0000552!8.15e-13!2 | |ontology_enrichment_celltype=CL:0000764!8.15e-13!2;CL:0000765!8.15e-13!2;CL:0000050!8.15e-13!2;CL:0000038!8.15e-13!2;CL:0000558!8.15e-13!2;CL:0000547!8.15e-13!2;CL:0000549!8.15e-13!2;CL:0000550!8.15e-13!2;CL:0000552!8.15e-13!2 | ||
|ontology_enrichment_celltype_v019=CL:0000764;4.49e-30;2!CL:0000558;4.49e-30;2 | |ontology_enrichment_celltype_v019=CL:0000764;4.49e-30;2!CL:0000558;4.49e-30;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000764,4.49e-30,2;CL:0000765,4.49e-30,2;CL:0000050,4.49e-30,2;CL:0000038,4.49e-30,2;CL:0000558,4.49e-30,2;CL:0000547,4.49e-30,2;CL:0000549,4.49e-30,2;CL:0000550,4.49e-30,2;CL:0000552,4.49e-30,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1036!1.46e-17!8;DOID:8692!2.39e-10!31;DOID:1240!5.65e-08!39 | |ontology_enrichment_disease=DOID:1036!1.46e-17!8;DOID:8692!2.39e-10!31;DOID:1240!5.65e-08!39 | ||
|ontology_enrichment_disease_v019=DOID:1036;7.57e-29;8!DOID:8692;4.29e-11;31!DOID:1240;7.05e-09;39 | |ontology_enrichment_disease_v019=DOID:1036;7.57e-29;8!DOID:8692;4.29e-11;31!DOID:1240;7.05e-09;39 | ||
|ontology_enrichment_disease_v019_2=DOID:1036,5.89e-29,8;DOID:8692,1.45e-11,31;DOID:1240,3.48e-09,39;DOID:2531,5.24e-07,51;DOID:0060083,5.24e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0001905!3.55e-12!2;UBERON:0002757!3.55e-12!2;UBERON:0010134!3.55e-12!2;UBERON:0002784!3.55e-12!2;UBERON:0005408!3.55e-12!2;UBERON:0001899!3.55e-12!2;UBERON:0000341!6.89e-12!2;UBERON:0000178!3.65e-09!15;UBERON:0000179!3.65e-09!15;UBERON:0000463!3.65e-09!15;UBERON:0007023!1.51e-07!115;UBERON:0001894!1.58e-07!7;UBERON:0006222!1.58e-07!7 | |ontology_enrichment_uberon=UBERON:0001905!3.55e-12!2;UBERON:0002757!3.55e-12!2;UBERON:0010134!3.55e-12!2;UBERON:0002784!3.55e-12!2;UBERON:0005408!3.55e-12!2;UBERON:0001899!3.55e-12!2;UBERON:0000341!6.89e-12!2;UBERON:0000178!3.65e-09!15;UBERON:0000179!3.65e-09!15;UBERON:0000463!3.65e-09!15;UBERON:0007023!1.51e-07!115;UBERON:0001894!1.58e-07!7;UBERON:0006222!1.58e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.24e-09;15!UBERON:0000179;4.24e-09;15!UBERON:0000463;4.24e-09;15!UBERON:0001905;2.40e-08;2!UBERON:0002757;2.40e-08;2!UBERON:0010134;2.40e-08;2!UBERON:0005408;2.40e-08;2!UBERON:0001899;2.40e-08;2!UBERON:0002390;1.65e-07;32 | |ontology_enrichment_uberon_v019=UBERON:0000178;4.24e-09;15!UBERON:0000179;4.24e-09;15!UBERON:0000463;4.24e-09;15!UBERON:0001905;2.40e-08;2!UBERON:0002757;2.40e-08;2!UBERON:0010134;2.40e-08;2!UBERON:0005408;2.40e-08;2!UBERON:0001899;2.40e-08;2!UBERON:0002390;1.65e-07;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.01e-09,15;UBERON:0000179,4.01e-09,15;UBERON:0000463,4.01e-09,15;UBERON:0001905,2.48e-08,2;UBERON:0002757,2.48e-08,2;UBERON:0010134,2.48e-08,2;UBERON:0005408,2.48e-08,2;UBERON:0001899,2.48e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.2948691448422,15.4246916104691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52234282769651,1.52927441428475,0,0.238231775457789,0,3.24236655596359,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,1.6227340708559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,1.80476528493745,3.52912561771931,3.18861015254101,6.26187317989811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,1.32506888912221,0.129282956361551,0,0,0,0,1.25763444079733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,1.3451348888753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,1.03132620757723,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.639701945702943,0.23806443146374,0,0.124149428591716,0,0,0.202117188958219,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.2948691448422,15.4246916104691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52234282769651,1.52927441428475,0,0.238231775457789,0,3.24236655596359,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,1.6227340708559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,1.80476528493745,3.52912561771931,3.18861015254101,6.26187317989811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,1.32506888912221,0.129282956361551,0,0,0,0,1.25763444079733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,1.3451348888753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,1.03132620757723,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.639701945702943,0.23806443146374,0,0.124149428591716,0,0,0.202117188958219,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr10:52315129..52315145,- | |short_description=p@chr10:52315129..52315145,- | ||
}} | }} |
Latest revision as of 14:05, 23 July 2015
Short description: | p@chr10:52315129..52315145, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:52315129..52315145, - |
Coexpression cluster: | C33_Reticulocytes_liver_Whole_blood_chronic_acute_spleen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 4.49e-30 | 2 |
erythroblast | 4.49e-30 | 2 |
megakaryocyte-erythroid progenitor cell | 4.49e-30 | 2 |
erythroid progenitor cell | 4.49e-30 | 2 |
reticulocyte | 4.49e-30 | 2 |
proerythroblast | 4.49e-30 | 2 |
basophilic erythroblast | 4.49e-30 | 2 |
polychromatophilic erythroblast | 4.49e-30 | 2 |
orthochromatic erythroblast | 4.49e-30 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 4.01e-09 | 15 |
haemolymphatic fluid | 4.01e-09 | 15 |
organism substance | 4.01e-09 | 15 |
pineal body | 2.48e-08 | 2 |
regional part of epithalamus | 2.48e-08 | 2 |
secretory circumventricular organ | 2.48e-08 | 2 |
circumventricular organ | 2.48e-08 | 2 |
epithalamus | 2.48e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 5.89e-29 | 8 |
myeloid leukemia | 1.45e-11 | 31 |
leukemia | 3.48e-09 | 39 |
hematologic cancer | 5.24e-07 | 51 |
immune system cancer | 5.24e-07 | 51 |