FFCP PHASE1:Hg19::chr11:129684577..129684583,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:129684577..129684583,- | |||
|description=CAGE_peak_at_chr11:129684577..129684583,- | |description=CAGE_peak_at_chr11:129684577..129684583,- | ||
|id=chr11:129684577..129684583,- | |id=chr11:129684577..129684583,- | ||
|ontology_enrichment_celltype=CL:0000791!7.16e-27!18;CL:0000789!7.16e-27!18;CL:0002420!7.16e-27!18;CL:0002419!7.16e-27!18;CL:0000790!7.16e-27!18;CL:0000084!9.07e-20!25;CL:0000827!9.07e-20!25;CL:0000625!9.74e-19!11;CL:0000624!1.12e-11!6;CL:0000838!6.36e-10!52;CL:0000542!1.27e-09!53;CL:0000051!1.27e-09!53;CL:0002087!2.06e-09!119;CL:0000738!2.49e-08!140;CL:0002031!3.80e-07!124 | |ontology_enrichment_celltype=CL:0000791!7.16e-27!18;CL:0000789!7.16e-27!18;CL:0002420!7.16e-27!18;CL:0002419!7.16e-27!18;CL:0000790!7.16e-27!18;CL:0000084!9.07e-20!25;CL:0000827!9.07e-20!25;CL:0000625!9.74e-19!11;CL:0000624!1.12e-11!6;CL:0000838!6.36e-10!52;CL:0000542!1.27e-09!53;CL:0000051!1.27e-09!53;CL:0002087!2.06e-09!119;CL:0000738!2.49e-08!140;CL:0002031!3.80e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000791;5.39e-51;18!CL:0000789;5.39e-51;18!CL:0002419;5.39e-51;18!CL:0000084;1.30e-35;25!CL:0000625;2.36e-32;11!CL:0000624;1.25e-23;6!CL:0000898;2.56e-12;3!CL:0000226;2.77e-12;3!CL:0000842;2.77e-12;3!CL:0000542;2.54e-09;53!CL:0000815;1.80e-08;2!CL:0000792;1.80e-08;2!CL:0002677;1.80e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.55e-51,18;CL:0000789,5.55e-51,18;CL:0002420,5.55e-51,18;CL:0002419,5.55e-51,18;CL:0000790,5.55e-51,18;CL:0000084,1.33e-35,25;CL:0000827,1.33e-35,25;CL:0000625,1.84e-32,11;CL:0000624,1.72e-23,6;CL:0000838,1.60e-19,52;CL:0000542,4.51e-19,53;CL:0000051,4.51e-19,53;CL:0002087,5.02e-13,115;CL:0000226,2.38e-12,3;CL:0000842,2.38e-12,3;CL:0000898,3.63e-12,3;CL:0000738,3.61e-10,136;CL:0002031,8.63e-09,120;CL:0000815,2.49e-08,2;CL:0000792,2.49e-08,2;CL:0002677,2.49e-08,2;CL:0000037,3.16e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000790;5.39e-51;18!CL:0000051;2.54e-09;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.20e-12!15;UBERON:0000179!2.20e-12!15;UBERON:0000463!2.20e-12!15 | |ontology_enrichment_uberon=UBERON:0000178!2.20e-12!15;UBERON:0000179!2.20e-12!15;UBERON:0000463!2.20e-12!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.23e-14;15!UBERON:0000179;1.23e-14;15!UBERON:0000463;1.23e-14;15!UBERON:0000014;9.46e-09;4!UBERON:0002390;9.75e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.41e-14,15;UBERON:0000179,1.41e-14,15;UBERON:0000463,1.41e-14,15;UBERON:0000014,8.72e-09,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0,1.73608696572681,0,0,0,0,0.377875943688809,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.3104597700173,7.46720449223413,8.42966145897988,0.167186495390678,2.28145586643513,0.946895611469467,0,0,1.17842362989935,0.443067789167242,0,0,0,0,0.276350017785848,0.289803085735052,10.8249191108304,8.02622484269139,2.09071047609954,1.24640276967323,12.2630557952615,6.8725489096526,3.03623630423403,4.45991580053735,4.55758417699493,1.90090408889675,2.71035214339991,1.91979916731628,1.24930726552346,2.36777252044017,1.64225599384209,1.00803371612366,0.802320587350522,2.17236605824198,0,0,0,0,0,0,0,0,0,0,0,3.40545596294053,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8114796023988,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,1.77327684181734,0.646882724578552,2.95188983443421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.44364894042395,3.45142721309787,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.7332146867014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,1.13929437434833,1.66762242820452,1.23408681925858,1.94541993357815,1.08006287447623,0.79312517629427,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0.278406173895242,0,0,0,0,0.18714054040822,0,0,0.111443384277478,0,0,0,0,0,0,0.111308705022906,0,0,0,0.828851746593443,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0.174919999992391,0,0,22.6285748760562,0.236387681767936,0,0,0,0,0,0,0,0,0,0,5.29810228258692,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.8360265725239,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,9.28724575346729,0.19351266257817,0.146178634172371,0.0821154570532092,0,0,0,0,1.78843150532691,0,0,0,0,0,0.432271251462318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472699093843342,0.412079291905832,0.741438982396034,0,0,0,0,0.160753148465019,0.137539436597234,0,0.2249738915515,0,0,1.34173875039706,0,0,22.9152730247112,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.106787412567695,0,0,3.96932817449561,11.2638630181828,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,1.76954585021611,0,0,0,0,0.198916222116275,0.0752103283492573,0.40341013740704,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0.118193840883968,0.222462803784138,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,1.5510319283216,0.955538938977433,0,0.883352102537187,0,0,0,0,1.45713297917742,0,0,0.237840181555137,0,0,0.150962843566674,0.0771741581079447,0,0,0,0,0,0,0,0,0.281951753939561,0.128915775947154,0,0.178553938605658,0,0.0802413666891683,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01627100556669,12.5943141173404,0,0,0,0,0,0,0,0,0,0.217716747896961,0,1.54909721933551,0.358611026963382,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0,1.73608696572681,0,0,0,0,0.377875943688809,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.3104597700173,7.46720449223413,8.42966145897988,0.167186495390678,2.28145586643513,0.946895611469467,0,0,1.17842362989935,0.443067789167242,0,0,0,0,0.276350017785848,0.289803085735052,10.8249191108304,8.02622484269139,2.09071047609954,1.24640276967323,12.2630557952615,6.8725489096526,3.03623630423403,4.45991580053735,4.55758417699493,1.90090408889675,2.71035214339991,1.91979916731628,1.24930726552346,2.36777252044017,1.64225599384209,1.00803371612366,0.802320587350522,2.17236605824198,0,0,0,0,0,0,0,0,0,0,0,3.40545596294053,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8114796023988,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,1.77327684181734,0.646882724578552,2.95188983443421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.44364894042395,3.45142721309787,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.7332146867014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,1.13929437434833,1.66762242820452,1.23408681925858,1.94541993357815,1.08006287447623,0.79312517629427,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0.278406173895242,0,0,0,0,0.18714054040822,0,0,0.111443384277478,0,0,0,0,0,0,0.111308705022906,0,0,0,0.828851746593443,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0.174919999992391,0,0,22.6285748760562,0.236387681767936,0,0,0,0,0,0,0,0,0,0,5.29810228258692,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.8360265725239,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,9.28724575346729,0.19351266257817,0.146178634172371,0.0821154570532092,0,0,0,0,1.78843150532691,0,0,0,0,0,0.432271251462318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472699093843342,0.412079291905832,0.741438982396034,0,0,0,0,0.160753148465019,0.137539436597234,0,0.2249738915515,0,0,1.34173875039706,0,0,22.9152730247112,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.106787412567695,0,0,3.96932817449561,11.2638630181828,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,1.76954585021611,0,0,0,0,0.198916222116275,0.0752103283492573,0.40341013740704,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0.118193840883968,0.222462803784138,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,1.5510319283216,0.955538938977433,0,0.883352102537187,0,0,0,0,1.45713297917742,0,0,0.237840181555137,0,0,0.150962843566674,0.0771741581079447,0,0,0,0,0,0,0,0,0.281951753939561,0.128915775947154,0,0.178553938605658,0,0.0802413666891683,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01627100556669,12.5943141173404,0,0,0,0,0,0,0,0,0,0.217716747896961,0,1.54909721933551,0.358611026963382,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | ||
|short_description=p@chr11:129684577..129684583,- | |short_description=p@chr11:129684577..129684583,- | ||
}} | }} |
Latest revision as of 19:56, 23 July 2015
Short description: | p@chr11:129684577..129684583, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:129684577..129684583, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.55e-51 | 18 |
alpha-beta T cell | 5.55e-51 | 18 |
immature T cell | 5.55e-51 | 18 |
mature T cell | 5.55e-51 | 18 |
immature alpha-beta T cell | 5.55e-51 | 18 |
T cell | 1.33e-35 | 25 |
pro-T cell | 1.33e-35 | 25 |
CD8-positive, alpha-beta T cell | 1.84e-32 | 11 |
CD4-positive, alpha-beta T cell | 1.72e-23 | 6 |
lymphoid lineage restricted progenitor cell | 1.60e-19 | 52 |
lymphocyte | 4.51e-19 | 53 |
common lymphoid progenitor | 4.51e-19 | 53 |
nongranular leukocyte | 5.02e-13 | 115 |
single nucleate cell | 2.38e-12 | 3 |
mononuclear cell | 2.38e-12 | 3 |
naive T cell | 3.63e-12 | 3 |
leukocyte | 3.61e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 8.63e-09 | 120 |
regulatory T cell | 2.49e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.49e-08 | 2 |
naive regulatory T cell | 2.49e-08 | 2 |
hematopoietic stem cell | 3.16e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
blood | 1.41e-14 | 15 |
haemolymphatic fluid | 1.41e-14 | 15 |
organism substance | 1.41e-14 | 15 |
zone of skin | 8.72e-09 | 4 |