FFCP PHASE1:Hg19::chr11:1948864..1948875,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:1948864..1948875,+ | |||
|coexpression_cluster_id=C3128 | |||
|description=CAGE_peak_at_chr11:1948864..1948875,+ | |description=CAGE_peak_at_chr11:1948864..1948875,+ | ||
|id=chr11:1948864..1948875,+ | |id=chr11:1948864..1948875,+ | ||
|ontology_enrichment_celltype=CL:0002541!2.28e-20!3;CL:0002537!1.74e-12!5;CL:0000349!1.09e-09!3;CL:0002577!1.09e-09!3;CL:1001319!1.30e-07!1;CL:1000600!1.30e-07!1;CL:0000083!4.47e-07!4 | |ontology_enrichment_celltype=CL:0002541!2.28e-20!3;CL:0002537!1.74e-12!5;CL:0000349!1.09e-09!3;CL:0002577!1.09e-09!3;CL:1001319!1.30e-07!1;CL:1000600!1.30e-07!1;CL:0000083!4.47e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.17e-46;19!CL:0002541;9.10e-34;3!CL:0002537;6.32e-21;5!CL:0002577;1.60e-09;3!CL:0000134;2.96e-09;55!CL:0000048;4.23e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.04e-46,19;CL:0002541,7.70e-34,3;CL:0002537,6.01e-21,5;CL:0002577,1.54e-09,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!2.28e-11!14;DOID:1799!1.48e-07!1;DOID:10165!1.48e-07!1;DOID:1798!1.48e-07!1;DOID:1793!4.47e-07!4 | |ontology_enrichment_disease=DOID:1749!2.28e-11!14;DOID:1799!1.48e-07!1;DOID:10165!1.48e-07!1;DOID:1798!1.48e-07!1;DOID:1793!4.47e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:1749;4.41e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.66e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.41e-44!14;UBERON:0000158!1.41e-44!14;UBERON:0003124!4.80e-33!7;UBERON:0000478!1.10e-30!24;UBERON:0004923!2.71e-22!57;UBERON:0000476!2.28e-20!3;UBERON:0000920!2.28e-20!3;UBERON:0003343!2.72e-15!4;UBERON:0004785!2.72e-15!4;UBERON:0001987!3.46e-15!4;UBERON:0004340!3.46e-15!4;UBERON:0000305!4.93e-15!7;UBERON:0001255!1.64e-13!2;UBERON:0001556!1.64e-13!2;UBERON:0003127!3.27e-13!2;UBERON:0004871!3.57e-13!8;UBERON:0000344!4.57e-13!12;UBERON:0003729!2.45e-12!5;UBERON:0000974!1.73e-10!10;UBERON:0004645!1.30e-07!1;UBERON:0001256!1.30e-07!1;UBERON:0001259!1.30e-07!1;UBERON:0002372!3.17e-07!1;UBERON:0001961!3.17e-07!1;UBERON:0001744!3.17e-07!1;UBERON:0001735!3.17e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;6.10e-40;10!UBERON:0000158;6.10e-40;10!UBERON:0000478;5.08e-37;24!UBERON:0003124;9.10e-34;3!UBERON:0000920;9.10e-34;3!UBERON:0000305;2.95e-15;7!UBERON:0004923;9.67e-09;55!UBERON:0003343;1.31e-07;4!UBERON:0004785;1.31e-07;4!UBERON:0001987;1.86e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.80e-44,14;UBERON:0000158,2.80e-44,14;UBERON:0000478,4.63e-37,24;UBERON:0000920,7.70e-34,3;UBERON:0003124,2.57e-32,7;UBERON:0000305,2.85e-15,7;UBERON:0004923,1.10e-13,66;UBERON:0004871,1.71e-13,8;UBERON:0003343,1.31e-07,4;UBERON:0004785,1.31e-07,4;UBERON:0001987,1.80e-07,4;UBERON:0004340,1.80e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.909382714338778,0,1.5119514666484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,3.26661148915902,2.76444631889309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448788222048861,0,1.5950057986596,0.824378340616761,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.06663573207384,0.943757786781923,0,0.346576998451015,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.443511850813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07132363163395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0.332660356546013,0.325613074443898,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.909382714338778,0,1.5119514666484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,3.26661148915902,2.76444631889309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448788222048861,0,1.5950057986596,0.824378340616761,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.06663573207384,0.943757786781923,0,0.346576998451015,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.443511850813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07132363163395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0.332660356546013,0.325613074443898,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr11:1948864..1948875,+ | |short_description=p@chr11:1948864..1948875,+ | ||
}} | }} |
Latest revision as of 20:49, 23 July 2015
Short description: | p@chr11:1948864..1948875, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:1948864..1948875, + |
Coexpression cluster: | C3128_oral_amniotic_chorionic_squamous_Placental_Mesenchymal_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.04e-46 | 19 |
chorionic membrane mesenchymal stem cell | 7.70e-34 | 3 |
amnion mesenchymal stem cell | 6.01e-21 | 5 |
placental epithelial cell | 1.54e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.80e-44 | 14 |
membranous layer | 2.80e-44 | 14 |
extraembryonic structure | 4.63e-37 | 24 |
egg chorion | 7.70e-34 | 3 |
chorion | 2.57e-32 | 7 |
amnion | 2.85e-15 | 7 |
organ component layer | 1.10e-13 | 66 |
somatic layer of lateral plate mesoderm | 1.71e-13 | 8 |
mucosa of oral region | 1.31e-07 | 4 |
respiratory system mucosa | 1.31e-07 | 4 |
placenta | 1.80e-07 | 4 |
allantois | 1.80e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.66e-08 | 14 |