FFCP PHASE1:Hg19::chr12:52881239..52881250,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52881239..52881250,- | |||
|coexpression_cluster_id=C748 | |coexpression_cluster_id=C748 | ||
|description=CAGE_peak_at_chr12:52881239..52881250,- | |description=CAGE_peak_at_chr12:52881239..52881250,- | ||
|id=chr12:52881239..52881250,- | |id=chr12:52881239..52881250,- | ||
|ontology_enrichment_celltype=CL:0002076!2.03e-32!43;CL:0000223!2.81e-22!59;CL:0002251!1.32e-20!21;CL:0000066!5.31e-15!254;CL:0002368!1.21e-14!13;CL:0000622!1.09e-13!5;CL:0002623!4.32e-13!3;CL:0002621!7.32e-13!3;CL:0000154!2.05e-11!6;CL:0000150!1.30e-07!9;CL:0002159!1.57e-07!13 | |ontology_enrichment_celltype=CL:0002076!2.03e-32!43;CL:0000223!2.81e-22!59;CL:0002251!1.32e-20!21;CL:0000066!5.31e-15!254;CL:0002368!1.21e-14!13;CL:0000622!1.09e-13!5;CL:0002623!4.32e-13!3;CL:0002621!7.32e-13!3;CL:0000154!2.05e-11!6;CL:0000150!1.30e-07!9;CL:0002159!1.57e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0000244;1.10e-12;4!CL:0000731;1.10e-12;4!CL:0000622;1.40e-10;5!CL:0002537;2.04e-10;5!CL:0000349;4.31e-10;19!CL:0000154;5.79e-09;6!CL:0002368;9.00e-09;13!CL:0000317;2.91e-07;2!CL:1000448;2.91e-07;2!CL:0002308;2.91e-07;2!CL:0002140;2.91e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,8.67e-13,4;CL:0000731,8.67e-13,4;CL:0000622,1.40e-10,5;CL:0002537,2.25e-10,5;CL:0000349,4.41e-10,19;CL:0000154,5.79e-09,6;CL:0002368,8.53e-09,13;CL:0000317,2.91e-07,2;CL:1000448,2.91e-07,2;CL:0002308,2.91e-07,2;CL:0002140,2.91e-07,2;CL:0002076,5.85e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0008814;2.91e-07;2!UBERON:0010056;2.91e-07;2 | |||
|ontology_enrichment_disease=DOID:1749!1.40e-12!14 | |ontology_enrichment_disease=DOID:1749!1.40e-12!14 | ||
|ontology_enrichment_disease_v019=DOID:3151;6.82e-13;1!DOID:3149;6.82e-13;1!DOID:3451;4.42e-07;2!DOID:4159;4.42e-07;2!DOID:0060122;4.42e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,6.82e-13,1;DOID:3149,6.82e-13,1;DOID:3451,4.42e-07,2;DOID:4159,4.42e-07,2;DOID:0060122,4.42e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000166!4.83e-21!21;UBERON:0000165!4.54e-18!28;UBERON:0000930!4.54e-18!28;UBERON:0000161!1.46e-16!35;UBERON:0001004!1.20e-15!72;UBERON:0001444!4.79e-13!48;UBERON:0004119!6.71e-13!169;UBERON:0000925!6.71e-13!169;UBERON:0006595!6.71e-13!169;UBERON:0001949!7.32e-13!3;UBERON:0003729!2.53e-12!5;UBERON:0003102!1.03e-10!95;UBERON:0003343!4.14e-09!4;UBERON:0004785!4.14e-09!4;UBERON:0005631!3.14e-07!14;UBERON:0000158!3.14e-07!14;UBERON:0001044!9.59e-07!6;UBERON:0003293!9.59e-07!6;UBERON:0003294!9.59e-07!6;UBERON:0010047!9.59e-07!6;UBERON:0000167!9.59e-07!6 | |ontology_enrichment_uberon=UBERON:0000166!4.83e-21!21;UBERON:0000165!4.54e-18!28;UBERON:0000930!4.54e-18!28;UBERON:0000161!1.46e-16!35;UBERON:0001004!1.20e-15!72;UBERON:0001444!4.79e-13!48;UBERON:0004119!6.71e-13!169;UBERON:0000925!6.71e-13!169;UBERON:0006595!6.71e-13!169;UBERON:0001949!7.32e-13!3;UBERON:0003729!2.53e-12!5;UBERON:0003102!1.03e-10!95;UBERON:0003343!4.14e-09!4;UBERON:0004785!4.14e-09!4;UBERON:0005631!3.14e-07!14;UBERON:0000158!3.14e-07!14;UBERON:0001044!9.59e-07!6;UBERON:0003293!9.59e-07!6;UBERON:0003294!9.59e-07!6;UBERON:0010047!9.59e-07!6;UBERON:0000167!9.59e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0001723;1.37e-16;3!UBERON:0001033;1.37e-16;3!UBERON:0005795;2.95e-13;1!UBERON:0005631;3.75e-11;10!UBERON:0000158;3.75e-11;10!UBERON:0000365;2.47e-10;5!UBERON:0000486;2.46e-09;12!UBERON:0005910;9.26e-09;6!UBERON:0000478;4.95e-08;24!UBERON:0000305;1.09e-07;7!UBERON:0002419;2.91e-07;2!UBERON:0007771;2.91e-07;2!UBERON:0003297;2.91e-07;2!UBERON:0001821;2.91e-07;2!UBERON:0003487;2.91e-07;2!UBERON:0001820;2.91e-07;2!UBERON:0000165;5.79e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,1.61e-16,3;UBERON:0001033,1.61e-16,3;UBERON:0010056,1.61e-16,3;UBERON:0005631,1.36e-13,14;UBERON:0000158,1.36e-13,14;UBERON:0000365,2.04e-10,5;UBERON:0005910,7.93e-09,6;UBERON:0000166,9.02e-09,22;UBERON:0000478,5.05e-08,24;UBERON:0000305,1.17e-07,7;UBERON:0003124,1.52e-07,7;UBERON:0002419,2.91e-07,2;UBERON:0007771,2.91e-07,2;UBERON:0003297,2.91e-07,2;UBERON:0001821,2.91e-07,2;UBERON:0003487,2.91e-07,2;UBERON:0001820,2.91e-07,2;UBERON:0005089,2.91e-07,2;UBERON:0005088,2.91e-07,2;UBERON:0001004,3.58e-07,74;UBERON:0004871,8.35e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67768489791571,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.818238361772504,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,1.53650399572076,0,0.402115889646523,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21251028578504,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.736647911487171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60024098414608,0,0,0,0,0,0,0,0,0,0.330569830721956,1.92190067365106,0.765676274967505,2.023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0.288666338176536,0,0,0,0,1.68471475667626,2.66058092122005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0,6.14321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0.153900517007594,0,0,0,0,1.5950057986596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489961987071888,0,0,0,0,0,0,0.581934098930517,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0.733714394086716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0.6828739083758,7.60385627995501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8303177226605,1.02669990325584,0,0,0.332660356546013,0,0,0,0,0,0,2.44137706989443,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67768489791571,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.818238361772504,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,1.53650399572076,0,0.402115889646523,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21251028578504,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.736647911487171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60024098414608,0,0,0,0,0,0,0,0,0,0.330569830721956,1.92190067365106,0.765676274967505,2.023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0.288666338176536,0,0,0,0,1.68471475667626,2.66058092122005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0,6.14321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0.153900517007594,0,0,0,0,1.5950057986596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489961987071888,0,0,0,0,0,0,0.581934098930517,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0.733714394086716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0.6828739083758,7.60385627995501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8303177226605,1.02669990325584,0,0,0.332660356546013,0,0,0,0,0,0,2.44137706989443,0,0,0 | ||
|short_description=p@chr12:52881239..52881250,- | |short_description=p@chr12:52881239..52881250,- | ||
}} | }} |
Latest revision as of 09:32, 24 July 2015
Short description: | p@chr12:52881239..52881250, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52881239..52881250, - |
Coexpression cluster: | C748_amniotic_keratoacanthoma_salivary_Keratinocyte_maxillary_Corneal_esophagus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 8.67e-13 | 4 |
urothelial cell | 8.67e-13 | 4 |
acinar cell | 1.40e-10 | 5 |
amnion mesenchymal stem cell | 2.25e-10 | 5 |
extraembryonic cell | 4.41e-10 | 19 |
protein secreting cell | 5.79e-09 | 6 |
respiratory epithelial cell | 8.53e-09 | 13 |
sebum secreting cell | 2.91e-07 | 2 |
epithelial cell of sweat gland | 2.91e-07 | 2 |
epithelial cell of skin gland | 2.91e-07 | 2 |
acinar cell of sebaceous gland | 2.91e-07 | 2 |
endo-epithelial cell | 5.85e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
tongue | 1.61e-16 | 3 |
gustatory system | 1.61e-16 | 3 |
future tongue | 1.61e-16 | 3 |
extraembryonic membrane | 1.36e-13 | 14 |
membranous layer | 1.36e-13 | 14 |
urothelium | 2.04e-10 | 5 |
transitional epithelium | 7.93e-09 | 6 |
oral opening | 9.02e-09 | 22 |
extraembryonic structure | 5.05e-08 | 24 |
amnion | 1.17e-07 | 7 |
chorion | 1.52e-07 | 7 |
skin gland | 2.91e-07 | 2 |
epidermis gland | 2.91e-07 | 2 |
gland of integumental system | 2.91e-07 | 2 |
sebaceous gland | 2.91e-07 | 2 |
skin sebaceous gland | 2.91e-07 | 2 |
sweat gland | 2.91e-07 | 2 |
sweat gland placode | 2.91e-07 | 2 |
sebaceous gland placode | 2.91e-07 | 2 |
respiratory system | 3.58e-07 | 74 |
somatic layer of lateral plate mesoderm | 8.35e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 6.82e-13 | 1 |
keratoacanthoma | 6.82e-13 | 1 |
skin carcinoma | 4.42e-07 | 2 |
skin cancer | 4.42e-07 | 2 |
integumentary system cancer | 4.42e-07 | 2 |