FFCP PHASE1:Hg19::chr12:85380634..85380663,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:85380634..85380663,+ | |||
|coexpression_cluster_id=C348 | |||
|description=CAGE_peak_at_chr12:85380634..85380663,+ | |description=CAGE_peak_at_chr12:85380634..85380663,+ | ||
|id=chr12:85380634..85380663,+ | |id=chr12:85380634..85380663,+ | ||
|ontology_enrichment_celltype=CL:0000147!7.21e-22!14;CL:0000148!8.56e-18!10;CL:0000541!8.56e-18!10;CL:0000453!4.31e-09!5;CL:0000325!8.99e-09!39;CL:0000710!1.43e-08!20;CL:0000075!3.77e-08!27;CL:0002567!7.97e-08!3;CL:0000333!9.40e-08!41;CL:0002586!1.49e-07!3 | |ontology_enrichment_celltype=CL:0000147!7.21e-22!14;CL:0000148!8.56e-18!10;CL:0000541!8.56e-18!10;CL:0000453!4.31e-09!5;CL:0000325!8.99e-09!39;CL:0000710!1.43e-08!20;CL:0000075!3.77e-08!27;CL:0002567!7.97e-08!3;CL:0000333!9.40e-08!41;CL:0002586!1.49e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000148;9.33e-62;10!CL:0000147;2.80e-44;14!CL:0002567;1.50e-33;3!CL:0000710;3.79e-31;20!CL:0002566;2.16e-26;1!CL:0000075;3.47e-23;27!CL:0002077;9.66e-17;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,9.33e-62,10;CL:0000541,9.33e-62,10;CL:0000147,2.80e-44,14;CL:0002567,1.50e-33,3;CL:0000710,3.79e-31,20;CL:0002566,2.16e-26,1;CL:0000075,3.47e-23,27;CL:0002077,1.72e-18,34;CL:0000333,1.09e-14,41;CL:0000133,1.98e-10,59;CL:0000221,1.24e-08,72 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.60e-09;3!CL:0000133;8.37e-07;59 | |||
|ontology_enrichment_disease=DOID:1909!2.23e-11!2 | |ontology_enrichment_disease=DOID:1909!2.23e-11!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;4.54e-50;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,6.61e-50,2 | |||
|ontology_enrichment_uberon=UBERON:0003056!3.63e-12!61;UBERON:0002346!2.61e-11!90;UBERON:0001875!5.75e-11!2;UBERON:0006514!5.75e-11!2;UBERON:0001876!6.35e-11!2;UBERON:0003075!1.87e-10!86;UBERON:0007284!1.87e-10!86;UBERON:0000073!2.34e-10!94;UBERON:0001016!2.34e-10!94;UBERON:0000966!1.22e-09!5;UBERON:0005388!1.22e-09!5;UBERON:0001802!1.22e-09!5;UBERON:0002780!1.48e-09!41;UBERON:0001890!1.48e-09!41;UBERON:0006240!1.48e-09!41;UBERON:0000349!1.73e-09!5;UBERON:0001049!2.62e-09!57;UBERON:0005068!2.62e-09!57;UBERON:0006241!2.62e-09!57;UBERON:0007135!2.62e-09!57;UBERON:0003080!2.71e-09!42;UBERON:0002420!5.23e-09!9;UBERON:0007245!5.23e-09!9;UBERON:0010009!5.23e-09!9;UBERON:0010011!5.23e-09!9;UBERON:0000454!5.23e-09!9;UBERON:0005743!6.06e-09!86;UBERON:0002616!6.41e-09!59;UBERON:0002791!7.79e-08!33;UBERON:0001893!1.41e-07!34;UBERON:0001781!1.49e-07!3;UBERON:0001782!1.49e-07!3;UBERON:0005424!1.49e-07!3;UBERON:0000924!2.93e-07!173;UBERON:0006601!2.93e-07!173;UBERON:0000955!3.50e-07!69;UBERON:0006238!3.50e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;1.42e-07;15!UBERON:0007376;1.42e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,1.49e-07,15;UBERON:0007376,1.49e-07,15;UBERON:0007383,1.49e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,23.2402293109339,1.52795370223311,1.17217447210047,0,2.15937734676979,0,16.0062802273124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.976135183992909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.281338832821026,0,0,0.63337622438398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874813840149763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0.600420288709789,0.684526894459965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,5.91431558412426,1.14186133417987,0,0,0,0,0,0,0,0,0,0.457680136793847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0.490696182767533,0,0.737318726261158,0,0,0,0,0,0.368211900503681,0,0,0.127894371303652,0,0.157265941855896,0,0,0.425149840203366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,1.57248397188644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0.940634592723046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,23.2402293109339,1.52795370223311,1.17217447210047,0,2.15937734676979,0,16.0062802273124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.976135183992909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.281338832821026,0,0,0.63337622438398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874813840149763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0.600420288709789,0.684526894459965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,5.91431558412426,1.14186133417987,0,0,0,0,0,0,0,0,0,0.457680136793847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0.490696182767533,0,0.737318726261158,0,0,0,0,0,0.368211900503681,0,0,0.127894371303652,0,0.157265941855896,0,0,0.425149840203366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,1.57248397188644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0.940634592723046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:85380634..85380663,+ | |short_description=p@chr12:85380634..85380663,+ | ||
}} | }} |
Latest revision as of 13:04, 24 July 2015
Short description: | p@chr12:85380634..85380663, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:85380634..85380663, + |
Coexpression cluster: | C348_Melanocyte_melanoma_retina_cervical_eye_carcinoid_Basophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 9.33e-62 | 10 |
melanoblast | 9.33e-62 | 10 |
pigment cell | 2.80e-44 | 14 |
light melanocyte | 1.50e-33 | 3 |
neurecto-epithelial cell | 3.79e-31 | 20 |
dark melanocyte | 2.16e-26 | 1 |
columnar/cuboidal epithelial cell | 3.47e-23 | 27 |
ecto-epithelial cell | 1.72e-18 | 34 |
migratory neural crest cell | 1.09e-14 | 41 |
neurectodermal cell | 1.98e-10 | 59 |
ectodermal cell | 1.24e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 1.49e-07 | 15 |
outer epithelium | 1.49e-07 | 15 |
enveloping layer of ectoderm | 1.49e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
melanoma | 6.61e-50 | 2 |