FFCP PHASE1:Hg19::chr13:111618030..111618074,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:111618030..111618074,+ | |||
|coexpression_cluster_id=C330 | |coexpression_cluster_id=C330 | ||
|description=CAGE_peak_at_chr13:111618030..111618074,+ | |description=CAGE_peak_at_chr13:111618030..111618074,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000860!1.44e-08!45;CL:0000066!3.06e-07!254;CL:0002057!7.29e-07!42 | |ontology_enrichment_celltype=CL:0000860!1.44e-08!45;CL:0000066!3.06e-07!254;CL:0002057!7.29e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0002178;7.29e-14;3!CL:0002149;4.50e-07;6!CL:0002255;4.50e-07;6 | |ontology_enrichment_celltype_v019=CL:0002178;7.29e-14;3!CL:0002149;4.50e-07;6!CL:0002255;4.50e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002178,7.29e-14,3;CL:0002149,4.06e-07,6;CL:0002255,4.06e-07,6;CL:0002076,5.21e-07,42;CL:0000223,5.22e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0005795;5.43e-07;10 | |ontology_enrichment_development_v019=UBERON:0005795;5.43e-07;10 | ||
|ontology_enrichment_disease=DOID:305!3.12e-23!106;DOID:162!1.67e-21!235;DOID:14566!1.58e-20!239;DOID:0050687!2.84e-19!143;DOID:1749!8.77e-13!14;DOID:299!3.78e-08!25;DOID:0050686!1.84e-07!137 | |ontology_enrichment_disease=DOID:305!3.12e-23!106;DOID:162!1.67e-21!235;DOID:14566!1.58e-20!239;DOID:0050687!2.84e-19!143;DOID:1749!8.77e-13!14;DOID:299!3.78e-08!25;DOID:0050686!1.84e-07!137 | ||
|ontology_enrichment_disease_v019=DOID:1036;7.51e-14;8!DOID:1749;7.05e-11;14!DOID:3493;1.92e-10;2!DOID:299;4.49e-10;25!DOID:3119;1.29e-07;14!DOID:3001;4.50e-07;6 | |ontology_enrichment_disease_v019=DOID:1036;7.51e-14;8!DOID:1749;7.05e-11;14!DOID:3493;1.92e-10;2!DOID:299;4.49e-10;25!DOID:3119;1.29e-07;14!DOID:3001;4.50e-07;6 | ||
|ontology_enrichment_disease_v019_2=DOID:1036,7.93e-14,8;DOID:162,9.06e-13,235;DOID:14566,2.38e-12,239;DOID:305,9.27e-12,106;DOID:1749,6.99e-11,14;DOID:3493,1.93e-10,2;DOID:0050686,2.60e-10,137;DOID:299,4.21e-10,25;DOID:3119,1.31e-07,14;DOID:0050687,1.47e-07,143;DOID:3001,4.06e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000344!4.47e-07!12 | |ontology_enrichment_uberon=UBERON:0000344!4.47e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0000945;1.70e-08;5!UBERON:0010039;1.70e-08;5 | |ontology_enrichment_uberon_v019=UBERON:0000945;1.70e-08;5!UBERON:0010039;1.70e-08;5 | ||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.410502947249729,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0.223915474239924,0,0,0,0,0,0.232429036905685,0.822335776043652,3.09706370895104,1.1507695692886,0,0.709446689665756,2.41321976515633,3.87290810150296,4.06279459783025,0.188242339542605,0.545812300115692,0.674170453335254,0.612167784741805,0.641858054152187,0,0,0,0.426224750532694,0.290209238628584,0,0,0,0,0.65156653411535,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0.167186495390678,0,0,0,0.779873198196215,0.589211814949674,0,0,4.09892223122161,2.08094956095805,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414644220061482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0.457847324091717,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,22.9671752924067,0,1.22520107990516,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78406173895242,0,0,0,0,0.37428108081644,0,0,58.0620032085662,0,0.47748896947538,0.296964680832639,1.22864280839693,0,0,0,20.6004842783449,0,0,0,0,0.102268682502155,0.738508832766417,0,1.43789361835723,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.796554137998498,115.939664533501,0.236387681767936,0,0,0,0,0.482385754501632,0,0,0,0,0,0,0,0.797594390929008,0.23056390438806,0,0.108647371922008,2.87101043758728,0.183195186803725,3.19820865611181,0,0,0,8.1214437822185,9.99918925020472,20.1385904371011,47.6281869137705,0.158936578980379,0,0.979396848954886,0.141353071433941,0,0,0,0,0.889563386041866,0.123563938946503,0,0,0,0,0,16.4358279902955,0,0,0,0,0,0.751617097072463,1.14057010536972,0,0,0.941798755221676,0,0,0.416024019039416,0,0.685946781900644,52.4967015679827,0,0,0.0967563312890851,0.438535902517113,0.328461828212837,0,0,0,0.411125773940253,0.19871461170299,0,0,0.801588202515337,0,2.79733453414982,3.02589876023623,0,0,5.76219191952599,0.372757606696298,0.235694034616795,8.29015657049046,10.355681784921,0,0,0,0.136905378891993,0,0,0.525774708558629,0,0,0,0,0,0,0,0,1.16495949527454,0,0.164831716762333,0.26961417541674,0.0984274815147488,0.592713324460491,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0.422401346077626,0,3.45447355175002,0,0,0,0,0,0,1.19730191562487,2.62696066397885,0,0,0,0,0,0,0,0,0,0,0,0,0.790446527591777,0,14.043507670944,0,0,0,0,0.157054096250234,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0.470531639396343,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,4.89473409012935,0.537266523244462,0.926404341482917,0.219284049578707,0.176689145945881,0.964570191354574,0.337884881306145,0,0,1.51929978088691,0,0,0,0,0,0.245772908753719,0.211312123358627,0.39997479170986,0,0.344429959321631,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,226.81937745587,0.235939446695481,0,4.85207797831421,0,0,0,0,0.40341013740704,0,0,0,13.7506160181852,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5966426629275,0.230467975111559,0,0,0,0.354581522651905,1.89093383216518,0.078493092850514,0.157115589916002,2.5224494698241,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,1.60374807980835,20.4736214538451,8.5998504507969,0,165.972045043376,44.2562067685638,0,0,0,0,0,0,0,0,0,0.301925687133347,0,0,0.940634592723046,0,0,0,0,0,0,0,0,0,0.178553938605658,0.705789743431384,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26721740526556,0.0918948995348449,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0.134704106029175,0.0717222053926763,0,0.325613074443898,0.640364075266293,0,0.179650404213174,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.410502947249729,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0.223915474239924,0,0,0,0,0,0.232429036905685,0.822335776043652,3.09706370895104,1.1507695692886,0,0.709446689665756,2.41321976515633,3.87290810150296,4.06279459783025,0.188242339542605,0.545812300115692,0.674170453335254,0.612167784741805,0.641858054152187,0,0,0,0.426224750532694,0.290209238628584,0,0,0,0,0.65156653411535,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0.167186495390678,0,0,0,0.779873198196215,0.589211814949674,0,0,4.09892223122161,2.08094956095805,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414644220061482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0.457847324091717,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,22.9671752924067,0,1.22520107990516,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78406173895242,0,0,0,0,0.37428108081644,0,0,58.0620032085662,0,0.47748896947538,0.296964680832639,1.22864280839693,0,0,0,20.6004842783449,0,0,0,0,0.102268682502155,0.738508832766417,0,1.43789361835723,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.796554137998498,115.939664533501,0.236387681767936,0,0,0,0,0.482385754501632,0,0,0,0,0,0,0,0.797594390929008,0.23056390438806,0,0.108647371922008,2.87101043758728,0.183195186803725,3.19820865611181,0,0,0,8.1214437822185,9.99918925020472,20.1385904371011,47.6281869137705,0.158936578980379,0,0.979396848954886,0.141353071433941,0,0,0,0,0.889563386041866,0.123563938946503,0,0,0,0,0,16.4358279902955,0,0,0,0,0,0.751617097072463,1.14057010536972,0,0,0.941798755221676,0,0,0.416024019039416,0,0.685946781900644,52.4967015679827,0,0,0.0967563312890851,0.438535902517113,0.328461828212837,0,0,0,0.411125773940253,0.19871461170299,0,0,0.801588202515337,0,2.79733453414982,3.02589876023623,0,0,5.76219191952599,0.372757606696298,0.235694034616795,8.29015657049046,10.355681784921,0,0,0,0.136905378891993,0,0,0.525774708558629,0,0,0,0,0,0,0,0,1.16495949527454,0,0.164831716762333,0.26961417541674,0.0984274815147488,0.592713324460491,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0.422401346077626,0,3.45447355175002,0,0,0,0,0,0,1.19730191562487,2.62696066397885,0,0,0,0,0,0,0,0,0,0,0,0,0.790446527591777,0,14.043507670944,0,0,0,0,0.157054096250234,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0.470531639396343,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,4.89473409012935,0.537266523244462,0.926404341482917,0.219284049578707,0.176689145945881,0.964570191354574,0.337884881306145,0,0,1.51929978088691,0,0,0,0,0,0.245772908753719,0.211312123358627,0.39997479170986,0,0.344429959321631,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,226.81937745587,0.235939446695481,0,4.85207797831421,0,0,0,0,0.40341013740704,0,0,0,13.7506160181852,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5966426629275,0.230467975111559,0,0,0,0.354581522651905,1.89093383216518,0.078493092850514,0.157115589916002,2.5224494698241,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,1.60374807980835,20.4736214538451,8.5998504507969,0,165.972045043376,44.2562067685638,0,0,0,0,0,0,0,0,0,0.301925687133347,0,0,0.940634592723046,0,0,0,0,0,0,0,0,0,0.178553938605658,0.705789743431384,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26721740526556,0.0918948995348449,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0.134704106029175,0.0717222053926763,0,0.325613074443898,0.640364075266293,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p@chr13:111618030..111618074,+ | |short_description=p@chr13:111618030..111618074,+ | ||
}} | }} |
Latest revision as of 14:36, 24 July 2015
Short description: | p@chr13:111618030..111618074, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:111618030..111618074, + |
Coexpression cluster: | C330_bronchioalveolar_oral_signet_embryonic_lymphangiectasia_testis_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 7.29e-14 | 3 |
epithelial cell of uterus | 4.06e-07 | 6 |
stromal cell of endometrium | 4.06e-07 | 6 |
endo-epithelial cell | 5.21e-07 | 42 |
endodermal cell | 5.22e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 7.93e-14 | 8 |
cancer | 9.06e-13 | 235 |
disease of cellular proliferation | 2.38e-12 | 239 |
carcinoma | 9.27e-12 | 106 |
squamous cell carcinoma | 6.99e-11 | 14 |
signet ring cell adenocarcinoma | 1.93e-10 | 2 |
organ system cancer | 2.60e-10 | 137 |
adenocarcinoma | 4.21e-10 | 25 |
gastrointestinal system cancer | 1.31e-07 | 14 |
cell type cancer | 1.47e-07 | 143 |
female reproductive endometrioid cancer | 4.06e-07 | 6 |