FFCP PHASE1:Hg19::chr14:22928070..22928084,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_uc001wea.3,uc010ajt.2,uc010aju.1_5end | |association_with_transcript=-4bp_to_uc001wea.3,uc010ajt.2,uc010aju.1_5end | ||
|cluster_id=chr14:22928070..22928084,+ | |||
|coexpression_cluster_id=C121 | |||
|description=CAGE_peak_2_at_uc001wea.3_5end,CAGE_peak_2_at_uc010ajt.2_5end,CAGE_peak_2_at_uc010aju.1_5end | |description=CAGE_peak_2_at_uc001wea.3_5end,CAGE_peak_2_at_uc010ajt.2_5end,CAGE_peak_2_at_uc010aju.1_5end | ||
|id=chr14:22928070..22928084,+ | |id=chr14:22928070..22928084,+ | ||
|ontology_enrichment_celltype=CL:0000842!9.55e-14!3;CL:0000224!1.95e-10!4;CL:0000080!4.19e-07!6;CL:0000623!4.57e-07!3;CL:0000825!4.57e-07!3;CL:0000767!5.31e-07!3 | |ontology_enrichment_celltype=CL:0000842!9.55e-14!3;CL:0000224!1.95e-10!4;CL:0000080!4.19e-07!6;CL:0000623!4.57e-07!3;CL:0000825!4.57e-07!3;CL:0000767!5.31e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002127;6.62e-41;1!CL:0000911;6.62e-41;1!CL:0000814;6.62e-41;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,6.62e-41,1;CL:0000914,6.62e-41,1;CL:0000911,6.62e-41,1;CL:0000814,6.62e-41,1;CL:0002042,6.62e-41,1;CL:0002039,6.62e-41,1;CL:0002040,6.62e-41,1;CL:0002041,6.62e-41,1;CL:0000893,3.11e-21,2;CL:0002489,3.11e-21,2;CL:0000809,3.11e-21,2;CL:0000808,3.11e-21,2;CL:0000894,3.11e-21,2;CL:0000806,3.11e-21,2;CL:0000807,3.11e-21,2;CL:0000805,3.11e-21,2;CL:0002425,3.11e-21,2 | |||
|ontology_enrichment_development_v019=CL:0002425;3.11e-21;2!UBERON:0006965;6.30e-21;2!UBERON:0004872;6.21e-07;7 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!6.77e-17!7;UBERON:0002370!9.75e-12!4;UBERON:0005058!9.75e-12!4;UBERON:0009113!9.75e-12!4;UBERON:0003295!9.75e-12!4;UBERON:0005562!9.75e-12!4;UBERON:0000178!2.28e-10!15;UBERON:0000179!2.28e-10!15;UBERON:0000463!2.28e-10!15;UBERON:0005409!1.11e-08!35;UBERON:0003351!5.93e-08!6;UBERON:0000974!6.12e-08!10;UBERON:0001042!9.86e-08!10;UBERON:0009145!9.86e-08!10;UBERON:0000160!4.29e-07!27;UBERON:0006562!4.97e-07!11;UBERON:0002106!5.99e-07!3;UBERON:0004854!5.99e-07!3;UBERON:0009034!5.99e-07!3;UBERON:0002095!5.99e-07!3;UBERON:0004782!5.99e-07!3;UBERON:0003281!5.99e-07!3;UBERON:0009664!5.99e-07!3;UBERON:0002296!5.99e-07!3;UBERON:0005602!5.99e-07!3;UBERON:0001179!5.99e-07!3;UBERON:0006293!5.99e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.34e-79;2!UBERON:0005058;2.34e-79;2!UBERON:0009113;2.34e-79;2!UBERON:0004177;1.44e-32;5!UBERON:0005057;1.44e-32;5!UBERON:0002114;1.96e-14;2!UBERON:0002108;3.35e-09;4!UBERON:0000077;6.82e-07;27!UBERON:0002405;6.82e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.23e-89,4;UBERON:0005058,4.23e-89,4;UBERON:0009113,4.23e-89,4;UBERON:0003295,4.23e-89,4;UBERON:0005562,4.23e-89,4;UBERON:0003351,8.15e-60,6;UBERON:0004177,1.93e-51,7;UBERON:0005057,1.93e-51,7;UBERON:0000974,2.40e-36,10;UBERON:0003408,2.40e-36,10;UBERON:0001042,2.40e-36,10;UBERON:0009145,2.40e-36,10;UBERON:0006562,3.85e-33,11;UBERON:0009722,3.85e-33,11;UBERON:0007690,3.85e-33,11;UBERON:0008814,1.20e-20,18;UBERON:0001557,1.31e-19,19;UBERON:0002114,2.09e-14,2;UBERON:0004807,1.34e-13,28;UBERON:0000077,3.69e-13,29;UBERON:0002368,4.78e-11,35;UBERON:0002108,3.49e-09,4;UBERON:0000949,9.12e-09,45;UBERON:0000072,2.00e-08,47;UBERON:0003929,1.99e-07,54;UBERON:0000065,1.99e-07,54;UBERON:0002530,7.38e-07,59 | |||
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| ||
|short_description=p2@uc001wea.3,p2@uc010ajt.2,p2@uc010aju.1 | |short_description=p2@uc001wea.3,p2@uc010ajt.2,p2@uc010aju.1 | ||
}} | }} |
Latest revision as of 19:12, 24 July 2015
Short description: | p2@uc001wea.3, p2@uc010ajt.2, p2@uc010aju.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_uc001wea.3_5end, CAGE_peak_2_at_uc010ajt.2_5end, CAGE_peak_2_at_uc010aju.1_5end |
Coexpression cluster: | C121_NK_Natural_CD8_CD4_anaplastic_chronic_B |
Association with transcript: | -4bp_to_uc001wea.3, uc010ajt.2, uc010aju.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 6.62e-41 | 1 |
immature NK T cell | 6.62e-41 | 1 |
effector T cell | 6.62e-41 | 1 |
mature NK T cell | 6.62e-41 | 1 |
immature NK T cell stage IV | 6.62e-41 | 1 |
immature NK T cell stage I | 6.62e-41 | 1 |
immature NK T cell stage II | 6.62e-41 | 1 |
immature NK T cell stage III | 6.62e-41 | 1 |
thymocyte | 3.11e-21 | 2 |
double negative thymocyte | 3.11e-21 | 2 |
double-positive, alpha-beta thymocyte | 3.11e-21 | 2 |
DN4 thymocyte | 3.11e-21 | 2 |
DN1 thymic pro-T cell | 3.11e-21 | 2 |
DN2 thymocyte | 3.11e-21 | 2 |
DN3 thymocyte | 3.11e-21 | 2 |
immature single positive thymocyte | 3.11e-21 | 2 |
early T lineage precursor | 3.11e-21 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.23e-89 | 4 |
hemolymphoid system gland | 4.23e-89 | 4 |
thymic region | 4.23e-89 | 4 |
pharyngeal gland | 4.23e-89 | 4 |
thymus primordium | 4.23e-89 | 4 |
pharyngeal epithelium | 8.15e-60 | 6 |
hemopoietic organ | 1.93e-51 | 7 |
immune organ | 1.93e-51 | 7 |
neck | 2.40e-36 | 10 |
gland of gut | 2.40e-36 | 10 |
chordate pharynx | 2.40e-36 | 10 |
pharyngeal region of foregut | 2.40e-36 | 10 |
pharynx | 3.85e-33 | 11 |
entire pharyngeal arch endoderm | 3.85e-33 | 11 |
early pharyngeal endoderm | 3.85e-33 | 11 |
pharyngeal arch system | 1.20e-20 | 18 |
upper respiratory tract | 1.31e-19 | 19 |
duodenum | 2.09e-14 | 2 |
respiratory system epithelium | 1.34e-13 | 28 |
mixed endoderm/mesoderm-derived structure | 3.69e-13 | 29 |
endocrine gland | 4.78e-11 | 35 |
small intestine | 3.49e-09 | 4 |
endocrine system | 9.12e-09 | 45 |
segment of respiratory tract | 2.00e-08 | 47 |
gut epithelium | 1.99e-07 | 54 |
respiratory tract | 1.99e-07 | 54 |
gland | 7.38e-07 | 59 |