FFCP PHASE1:Hg19::chr18:77557948..77557968,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:77557948..77557968,+ | |||
|coexpression_cluster_id=C3742 | |coexpression_cluster_id=C3742 | ||
|description=CAGE_peak_at_chr18:77557948..77557968,+ | |description=CAGE_peak_at_chr18:77557948..77557968,+ | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000784;8.32e-18;3!CL:0002504;2.01e-17;3!CL:1000279;2.01e-17;3!CL:1000280;2.01e-17;3!CL:0002195;5.66e-12;2!CL:0002571;5.66e-12;2!CL:0002549;8.50e-12;2!CL:0002590;6.15e-08;3!CL:0002622;6.15e-08;3!CL:0002032;4.85e-07;1!CL:0000557;4.85e-07;1!CL:0002599;4.85e-07;1 | |ontology_enrichment_celltype_v019=CL:0000784;8.32e-18;3!CL:0002504;2.01e-17;3!CL:1000279;2.01e-17;3!CL:1000280;2.01e-17;3!CL:0002195;5.66e-12;2!CL:0002571;5.66e-12;2!CL:0002549;8.50e-12;2!CL:0002590;6.15e-08;3!CL:0002622;6.15e-08;3!CL:0002032;4.85e-07;1!CL:0000557;4.85e-07;1!CL:0002599;4.85e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000784,8.57e-18,3;CL:0002504,2.07e-17,3;CL:1000279,2.07e-17,3;CL:1000280,2.07e-17,3;CL:0002195,4.68e-12,2;CL:0002571,4.68e-12,2;CL:0002549,8.98e-12,2;CL:0002622,5.84e-08,3;CL:0002590,7.46e-08,3;CL:0002599,4.58e-07,1;CL:0000192,6.54e-07,43;CL:0000514,6.54e-07,43;CL:0001024,7.60e-07,1 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.36e-17!115;UBERON:0001017!1.09e-15!82;UBERON:0005743!2.00e-15!86;UBERON:0002616!5.24e-15!59;UBERON:0001049!5.59e-14!57;UBERON:0005068!5.59e-14!57;UBERON:0006241!5.59e-14!57;UBERON:0007135!5.59e-14!57;UBERON:0002619!7.72e-14!22;UBERON:0001893!3.51e-13!34;UBERON:0003075!3.86e-13!86;UBERON:0007284!3.86e-13!86;UBERON:0001869!4.00e-13!32;UBERON:0000073!8.50e-13!94;UBERON:0001016!8.50e-13!94;UBERON:0002791!1.77e-12!33;UBERON:0000955!3.77e-12!69;UBERON:0006238!3.77e-12!69;UBERON:0002346!4.85e-12!90;UBERON:0002780!5.19e-12!41;UBERON:0001890!5.19e-12!41;UBERON:0006240!5.19e-12!41;UBERON:0002020!6.40e-12!34;UBERON:0003528!6.40e-12!34;UBERON:0001950!8.10e-12!20;UBERON:0000956!1.29e-11!25;UBERON:0000203!1.29e-11!25;UBERON:0003080!1.46e-11!42;UBERON:0003056!8.59e-11!61;UBERON:0000153!1.27e-08!129;UBERON:0007811!1.27e-08!129;UBERON:0000033!4.71e-08!123;UBERON:0000119!4.77e-08!312;UBERON:0000483!4.72e-07!309;UBERON:0002200!7.90e-07!11;UBERON:0006876!7.90e-07!11 | |ontology_enrichment_uberon=UBERON:0007023!4.36e-17!115;UBERON:0001017!1.09e-15!82;UBERON:0005743!2.00e-15!86;UBERON:0002616!5.24e-15!59;UBERON:0001049!5.59e-14!57;UBERON:0005068!5.59e-14!57;UBERON:0006241!5.59e-14!57;UBERON:0007135!5.59e-14!57;UBERON:0002619!7.72e-14!22;UBERON:0001893!3.51e-13!34;UBERON:0003075!3.86e-13!86;UBERON:0007284!3.86e-13!86;UBERON:0001869!4.00e-13!32;UBERON:0000073!8.50e-13!94;UBERON:0001016!8.50e-13!94;UBERON:0002791!1.77e-12!33;UBERON:0000955!3.77e-12!69;UBERON:0006238!3.77e-12!69;UBERON:0002346!4.85e-12!90;UBERON:0002780!5.19e-12!41;UBERON:0001890!5.19e-12!41;UBERON:0006240!5.19e-12!41;UBERON:0002020!6.40e-12!34;UBERON:0003528!6.40e-12!34;UBERON:0001950!8.10e-12!20;UBERON:0000956!1.29e-11!25;UBERON:0000203!1.29e-11!25;UBERON:0003080!1.46e-11!42;UBERON:0003056!8.59e-11!61;UBERON:0000153!1.27e-08!129;UBERON:0007811!1.27e-08!129;UBERON:0000033!4.71e-08!123;UBERON:0000119!4.77e-08!312;UBERON:0000483!4.72e-07!309;UBERON:0002200!7.90e-07!11;UBERON:0006876!7.90e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0005284;2.94e-17;5!UBERON:0006876;8.04e-12;11!UBERON:0005629;8.50e-12;2!UBERON:0005358;8.50e-12;2!UBERON:0001886;8.50e-12;2!UBERON:0004086;8.50e-12;2!UBERON:0005282;8.50e-12;2!UBERON:0005281;8.50e-12;2 | |ontology_enrichment_uberon_v019=UBERON:0005284;2.94e-17;5!UBERON:0006876;8.04e-12;11!UBERON:0005629;8.50e-12;2!UBERON:0005358;8.50e-12;2!UBERON:0001886;8.50e-12;2!UBERON:0004086;8.50e-12;2!UBERON:0005282;8.50e-12;2!UBERON:0005281;8.50e-12;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005284,3.88e-17,5;UBERON:0006876,8.05e-12,11;UBERON:0005629,8.98e-12,2;UBERON:0005358,8.98e-12,2;UBERON:0001886,8.98e-12,2;UBERON:0004086,8.98e-12,2;UBERON:0005282,8.98e-12,2;UBERON:0005281,8.98e-12,2 | |||
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|short_description=p@chr18:77557948..77557968,+ | |short_description=p@chr18:77557948..77557968,+ | ||
}} | }} |
Latest revision as of 02:30, 26 July 2015
Short description: | p@chr18:77557948..77557968, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:77557948..77557968, + |
Coexpression cluster: | C3742_Dendritic_granulocyte_Smooth_Mesenchymal_Fibroblast_merkel_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 8.57e-18 | 3 |
enteric smooth muscle cell | 2.07e-17 | 3 |
smooth muscle cell of large intestine | 2.07e-17 | 3 |
smooth muscle cell of colon | 2.07e-17 | 3 |
hepatic stem cell | 4.68e-12 | 2 |
hepatic mesenchymal stem cell | 4.68e-12 | 2 |
fibroblast of choroid plexus | 8.98e-12 | 2 |
prostate stromal cell | 5.84e-08 | 3 |
smooth muscle cell of the brain vasculature | 7.46e-08 | 3 |
smooth muscle cell of the esophagus | 4.58e-07 | 1 |
smooth muscle cell | 6.54e-07 | 43 |
smooth muscle myoblast | 6.54e-07 | 43 |
CD34-positive, CD38-negative hematopoietic stem cell | 7.60e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
brain vasculature | 3.88e-17 | 5 |
vasculature of organ | 8.05e-12 | 11 |
vascular plexus | 8.98e-12 | 2 |
ventricle of nervous system | 8.98e-12 | 2 |
choroid plexus | 8.98e-12 | 2 |
brain ventricle | 8.98e-12 | 2 |
ventricular system of brain | 8.98e-12 | 2 |
ventricular system of central nervous system | 8.98e-12 | 2 |