FFCP PHASE1:Hg19::chr1:115722491..115722498,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:115722491..115722498,+ | |||
|description=CAGE_peak_at_chr1:115722491..115722498,+ | |description=CAGE_peak_at_chr1:115722491..115722498,+ | ||
|id=chr1:115722491..115722498,+ | |id=chr1:115722491..115722498,+ | ||
|ontology_enrichment_celltype=CL:0002334!3.30e-23!12;CL:0000057!7.33e-19!75;CL:0002620!3.64e-11!23;CL:0000055!1.07e-09!180;CL:0002541!1.00e-08!3;CL:0002580!3.65e-08!3;CL:0002579!4.67e-08!3;CL:0000197!2.01e-07!6;CL:0000098!2.01e-07!6;CL:0002167!2.01e-07!6 | |ontology_enrichment_celltype=CL:0002334!3.30e-23!12;CL:0000057!7.33e-19!75;CL:0002620!3.64e-11!23;CL:0000055!1.07e-09!180;CL:0002541!1.00e-08!3;CL:0002580!3.65e-08!3;CL:0002579!4.67e-08!3;CL:0000197!2.01e-07!6;CL:0000098!2.01e-07!6;CL:0002167!2.01e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002541;2.17e-15;3!CL:0002581;3.09e-12;1!CL:0000228;1.07e-11;1!CL:0002372;1.07e-11;1!CL:0002620;1.92e-11;23!CL:0000569;2.63e-11;4 | |ontology_enrichment_celltype_v019=CL:0002541;2.17e-15;3!CL:0002581;3.09e-12;1!CL:0000228;1.07e-11;1!CL:0002372;1.07e-11;1!CL:0002620;1.92e-11;23!CL:0000569;2.63e-11;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002541,2.10e-15,3;CL:0002581,3.27e-12,1;CL:0000228,8.64e-12,1;CL:0002372,8.64e-12,1;CL:0002620,2.25e-11,23;CL:0000569,3.78e-11,4;CL:0000011,3.78e-11,4 | |||
|ontology_enrichment_development_v019=CL:0000011;2.63e-11;4 | |ontology_enrichment_development_v019=CL:0000011;2.63e-11;4 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2513;1.07e-11;1!DOID:17;2.31e-09;5!DOID:450;2.31e-09;5!DOID:66;2.31e-09;5!DOID:423;2.31e-09;5!DOID:0080000;2.31e-09;5!DOID:11722;2.31e-09;5 | |ontology_enrichment_disease_v019=DOID:2513;1.07e-11;1!DOID:17;2.31e-09;5!DOID:450;2.31e-09;5!DOID:66;2.31e-09;5!DOID:423;2.31e-09;5!DOID:0080000;2.31e-09;5!DOID:11722;2.31e-09;5 | ||
|ontology_enrichment_disease_v019_2=DOID:2513,1.32e-11,1;DOID:17,2.57e-09,5;DOID:450,2.57e-09,5;DOID:66,2.57e-09,5;DOID:423,2.57e-09,5;DOID:0080000,2.57e-09,5;DOID:11722,2.57e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!3.60e-09!45;UBERON:0002416!3.60e-09!45;UBERON:0000476!1.00e-08!3;UBERON:0000920!1.00e-08!3;UBERON:0002097!6.22e-08!40;UBERON:0003688!5.79e-07!6;UBERON:0002358!5.79e-07!6;UBERON:0003684!5.79e-07!6;UBERON:0001178!5.79e-07!6 | |ontology_enrichment_uberon=UBERON:0002199!3.60e-09!45;UBERON:0002416!3.60e-09!45;UBERON:0000476!1.00e-08!3;UBERON:0000920!1.00e-08!3;UBERON:0002097!6.22e-08!40;UBERON:0003688!5.79e-07!6;UBERON:0002358!5.79e-07!6;UBERON:0003684!5.79e-07!6;UBERON:0001178!5.79e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;2.17e-15;3!UBERON:0000920;2.17e-15;3!UBERON:0002097;3.18e-11;41!UBERON:0002199;1.16e-09;46!UBERON:0002416;1.16e-09;46!UBERON:0003102;1.66e-07;50!UBERON:0001013;2.15e-07;14!UBERON:0005406;9.69e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0003124;2.17e-15;3!UBERON:0000920;2.17e-15;3!UBERON:0002097;3.18e-11;41!UBERON:0002199;1.16e-09;46!UBERON:0002416;1.16e-09;46!UBERON:0003102;1.66e-07;50!UBERON:0001013;2.15e-07;14!UBERON:0005406;9.69e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,2.10e-15,3;UBERON:0002097,7.50e-12,41;UBERON:0002199,1.72e-10,46;UBERON:0002416,1.72e-10,46;UBERON:0001013,1.89e-07,14;UBERON:0003124,4.20e-07,7;UBERON:0005406,9.96e-07,2 | |||
|phase1_expression=0.363356758541113,0,0.986680828671798,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,0,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,2.1185468930115,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25572744982203,0,0.211931901159562,2.10063767259082,0,0.257640540045629,0.18611685633159,3.88185564154912,1.07180705677318,4.54380793639406,0,0.484938170456436,0.355009592516614,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,1.60586089917446,0.788512075169673,0.702848489956279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496215615637554,0.61384789315225,0.280660094433074,0.640695746278505,0.511707249066704,0.160853921143607,4.45254199334973,0.308419387605311,0.355123450626254,0.328508624055237,0,0.464841513839837,0,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0.296964680832639,0,0,0,0,0,0,0,0,0,0.20453736500431,0,1.24415835064723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.33702667383415,0.183195186803725,2.13213910407454,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0.687944129886466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94031243752936,0.467426619694449,2.21922344601045,0,0,0,0,1.20984739010591,1.08806040407946,0.295710299979268,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0.226705925512272,0.463044948647668,0,0,0.308801447160972,0,0,0,0.675769762612291,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59002175326709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0.118193840883968,0,0,0,0,0,0.863710364874486,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3746412112643,0,0,0,0,0,0.647428837187895,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.363356758541113,0,0.986680828671798,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,0,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,2.1185468930115,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25572744982203,0,0.211931901159562,2.10063767259082,0,0.257640540045629,0.18611685633159,3.88185564154912,1.07180705677318,4.54380793639406,0,0.484938170456436,0.355009592516614,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,1.60586089917446,0.788512075169673,0.702848489956279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496215615637554,0.61384789315225,0.280660094433074,0.640695746278505,0.511707249066704,0.160853921143607,4.45254199334973,0.308419387605311,0.355123450626254,0.328508624055237,0,0.464841513839837,0,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0.296964680832639,0,0,0,0,0,0,0,0,0,0.20453736500431,0,1.24415835064723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.33702667383415,0.183195186803725,2.13213910407454,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0.687944129886466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94031243752936,0.467426619694449,2.21922344601045,0,0,0,0,1.20984739010591,1.08806040407946,0.295710299979268,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0.226705925512272,0.463044948647668,0,0,0.308801447160972,0,0,0,0.675769762612291,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59002175326709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0.118193840883968,0,0,0,0,0,0.863710364874486,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3746412112643,0,0,0,0,0,0.647428837187895,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:115722491..115722498,+ | |short_description=p@chr1:115722491..115722498,+ | ||
}} | }} |
Latest revision as of 20:01, 27 July 2015
Short description: | p@chr1:115722491..115722498, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:115722491..115722498, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 2.10e-15 | 3 |
perirenal preadipocyte | 3.27e-12 | 1 |
multinucleate cell | 8.64e-12 | 1 |
myotube | 8.64e-12 | 1 |
skin fibroblast | 2.25e-11 | 23 |
cardiac mesenchymal cell | 3.78e-11 | 4 |
migratory trunk neural crest cell | 3.78e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 2.10e-15 | 3 |
skin of body | 7.50e-12 | 41 |
integument | 1.72e-10 | 46 |
integumental system | 1.72e-10 | 46 |
adipose tissue | 1.89e-07 | 14 |
chorion | 4.20e-07 | 7 |
perirenal fat | 9.96e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 1.32e-11 | 1 |
musculoskeletal system disease | 2.57e-09 | 5 |
myotonic disease | 2.57e-09 | 5 |
muscle tissue disease | 2.57e-09 | 5 |
myopathy | 2.57e-09 | 5 |
muscular disease | 2.57e-09 | 5 |
myotonic dystrophy | 2.57e-09 | 5 |