FFCP PHASE1:Hg19::chr1:163043243..163043264,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:163043243..163043264,+ | |||
|description=CAGE_peak_at_chr1:163043243..163043264,+ | |description=CAGE_peak_at_chr1:163043243..163043264,+ | ||
|id=chr1:163043243..163043264,+ | |id=chr1:163043243..163043264,+ | ||
|ontology_enrichment_celltype=CL:0000359;3.73e-17;32!CL:1000306;1.01e-12;4!CL:0002547;1.01e-12;4!CL:0002589;6.87e-12;2!CL:0000192;8.58e-11;43!CL:0002595;2.80e-10;5 | |ontology_enrichment_celltype=CL:0000359!1.36e-20!32;CL:0000192!2.29e-17!42;CL:0000514!2.29e-17!42;CL:0000680!1.70e-14!57;CL:0000056!1.70e-14!57;CL:0000355!1.70e-14!57;CL:0000187!1.39e-12!54;CL:0000183!8.42e-12!59;CL:0000393!1.86e-10!60;CL:0000211!1.86e-10!60;CL:0000222!2.16e-10!119;CL:0000055!5.26e-10!180 | ||
| | |ontology_enrichment_celltype_v019=CL:0000359;3.73e-17;32!CL:1000306;1.01e-12;4!CL:0002547;1.01e-12;4!CL:0002589;6.87e-12;2!CL:0000192;8.58e-11;43!CL:0002595;2.80e-10;5 | ||
|ontology_enrichment_disease=DOID:0060084;1.51e-17;3!DOID:127;1.51e-17;3!DOID:0060072;2.72e-13;4!DOID:2394;8.79e-10;14!DOID:120;6.88e-07;27 | |ontology_enrichment_celltype_v019_2=CL:0000359,3.65e-18,32;CL:0000192,5.49e-13,43;CL:0000514,5.49e-13,43;CL:1000306,8.59e-13,4;CL:0002547,8.59e-13,4;CL:0002589,6.52e-12,2;CL:0002595,3.30e-10,5;CL:0000187,1.04e-09,55;CL:0000680,4.22e-09,58;CL:0000056,4.22e-09,58;CL:0000355,4.22e-09,58;CL:0000393,1.48e-08,61;CL:0000211,1.48e-08,61 | ||
|ontology_enrichment_uberon=UBERON:0001637;5.35e-17;42!UBERON:0003509;5.35e-17;42!UBERON:0004572;5.35e-17;42!UBERON:0004573;5.98e-16;33!UBERON:0004571;5.98e-16;33!UBERON:0004797;1.01e-12;4!UBERON:0000415;1.01e-12;4!UBERON:0007240;1.01e-12;4!UBERON:0005742;1.01e-12;4!UBERON:0005734;1.01e-12;4!UBERON:0004664;1.01e-12;4!UBERON:0004663;1.01e-12;4!UBERON:0001529;6.87e-12;2!UBERON:0007204;6.87e-12;2!UBERON:0003834;2.80e-10;5!UBERON:0001533;2.80e-10;5!UBERON:0007500;1.69e-08;56!UBERON:0001981;1.69e-08;56!UBERON:0004537;1.69e-08;56!UBERON:0003513;1.80e-07;7!UBERON:0002049;8.04e-07;75!UBERON:0007798;8.04e-07;75!UBERON:0003134;8.64e-07;33 | |ontology_enrichment_development_v019=CL:0000514;8.58e-11;43 | ||
|ontology_enrichment_disease=DOID:2394!9.33e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.51e-17;3!DOID:127;1.51e-17;3!DOID:0060072;2.72e-13;4!DOID:2394;8.79e-10;14!DOID:120;6.88e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.43e-17,3;DOID:127,1.43e-17,3;DOID:0060072,2.61e-13,4;DOID:2394,7.58e-10,14;DOID:120,6.38e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0001637!5.51e-19!42;UBERON:0003509!5.51e-19!42;UBERON:0004572!5.51e-19!42;UBERON:0002049!1.99e-17!79;UBERON:0007798!1.99e-17!79;UBERON:0004872!7.87e-17!84;UBERON:0001981!2.31e-16!60;UBERON:0007500!2.31e-16!60;UBERON:0004537!2.31e-16!60;UBERON:0006965!2.31e-16!60;UBERON:0004535!3.59e-16!110;UBERON:0001009!2.46e-15!113;UBERON:0000055!6.44e-15!69;UBERON:0001134!6.72e-13!61;UBERON:0002036!6.72e-13!61;UBERON:0003082!6.72e-13!61;UBERON:0000025!7.35e-13!194;UBERON:0002385!3.49e-12!63;UBERON:0001015!3.49e-12!63;UBERON:0000383!3.49e-12!63;UBERON:0004573!3.57e-12!33;UBERON:0004571!3.57e-12!33;UBERON:0004290!7.79e-12!70;UBERON:0000119!5.67e-10!312;UBERON:0000914!6.44e-10!83;UBERON:0002329!6.44e-10!83;UBERON:0003077!6.44e-10!83;UBERON:0003059!6.44e-10!83;UBERON:0007282!6.44e-10!83;UBERON:0009618!6.44e-10!83;UBERON:0007285!6.44e-10!83;UBERON:0000483!9.27e-10!309;UBERON:0003914!1.12e-09!118;UBERON:0001950!6.73e-09!20;UBERON:0002020!1.02e-08!34;UBERON:0003528!1.02e-08!34;UBERON:0004111!1.05e-08!241;UBERON:0000486!1.06e-08!82;UBERON:0001869!1.39e-08!32;UBERON:0000477!5.17e-08!286;UBERON:0001893!8.34e-08!34;UBERON:0002619!8.51e-08!22;UBERON:0000948!1.25e-07!24;UBERON:0005498!1.25e-07!24;UBERON:0004140!1.25e-07!24;UBERON:0009881!1.25e-07!24;UBERON:0004141!1.25e-07!24;UBERON:0003084!1.25e-07!24;UBERON:0007005!1.25e-07!24;UBERON:0004139!1.25e-07!24;UBERON:0004291!1.25e-07!24;UBERON:0000200!1.49e-07!6;UBERON:0003075!2.14e-07!86;UBERON:0007284!2.14e-07!86;UBERON:0002346!2.36e-07!90;UBERON:0002616!2.46e-07!59;UBERON:0002780!2.56e-07!41;UBERON:0001890!2.56e-07!41;UBERON:0006240!2.56e-07!41;UBERON:0002791!3.01e-07!33;UBERON:0003080!5.03e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;5.35e-17;42!UBERON:0003509;5.35e-17;42!UBERON:0004572;5.35e-17;42!UBERON:0004573;5.98e-16;33!UBERON:0004571;5.98e-16;33!UBERON:0004797;1.01e-12;4!UBERON:0000415;1.01e-12;4!UBERON:0007240;1.01e-12;4!UBERON:0005742;1.01e-12;4!UBERON:0005734;1.01e-12;4!UBERON:0004664;1.01e-12;4!UBERON:0004663;1.01e-12;4!UBERON:0001529;6.87e-12;2!UBERON:0007204;6.87e-12;2!UBERON:0003834;2.80e-10;5!UBERON:0001533;2.80e-10;5!UBERON:0007500;1.69e-08;56!UBERON:0001981;1.69e-08;56!UBERON:0004537;1.69e-08;56!UBERON:0003513;1.80e-07;7!UBERON:0002049;8.04e-07;75!UBERON:0007798;8.04e-07;75!UBERON:0003134;8.64e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,4.45e-22,42;UBERON:0003509,4.45e-22,42;UBERON:0004572,4.45e-22,42;UBERON:0004573,1.24e-17,33;UBERON:0004571,1.24e-17,33;UBERON:0007500,7.03e-15,59;UBERON:0001981,7.03e-15,59;UBERON:0004537,7.03e-15,59;UBERON:0006965,7.03e-15,59;UBERON:0004872,3.42e-13,83;UBERON:0000415,8.59e-13,4;UBERON:0007240,8.59e-13,4;UBERON:0005742,8.59e-13,4;UBERON:0005734,8.59e-13,4;UBERON:0004664,8.59e-13,4;UBERON:0004663,8.59e-13,4;UBERON:0000055,1.57e-12,68;UBERON:0001529,6.52e-12,2;UBERON:0007204,6.52e-12,2;UBERON:0002049,1.47e-10,78;UBERON:0007798,1.47e-10,78;UBERON:0003834,3.30e-10,5;UBERON:0001533,3.30e-10,5;UBERON:0004535,2.98e-09,109;UBERON:0001009,6.46e-09,112;UBERON:0003914,2.14e-08,117;UBERON:0001134,2.20e-08,62;UBERON:0002036,2.20e-08,62;UBERON:0003082,2.20e-08,62;UBERON:0002385,4.63e-08,64;UBERON:0001015,4.63e-08,64;UBERON:0000383,4.63e-08,64;UBERON:0004797,1.65e-07,7;UBERON:0003513,2.02e-07,7;UBERON:0002329,4.51e-07,71;UBERON:0003059,4.51e-07,71;UBERON:0007282,4.51e-07,71;UBERON:0004290,4.51e-07,71;UBERON:0009618,4.51e-07,71;UBERON:0003077,6.02e-07,72;UBERON:0007285,6.02e-07,72;UBERON:0007524,7.97e-07,73 | |||
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|short_description=p@chr1:163043243..163043264,+ | |short_description=p@chr1:163043243..163043264,+ | ||
}} | }} |
Latest revision as of 23:46, 27 July 2015
Short description: | p@chr1:163043243..163043264, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:163043243..163043264, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.65e-18 | 32 |
smooth muscle cell | 5.49e-13 | 43 |
smooth muscle myoblast | 5.49e-13 | 43 |
fibroblast of tunica adventitia of artery | 8.59e-13 | 4 |
fibroblast of the aortic adventitia | 8.59e-13 | 4 |
smooth muscle cell of the brachiocephalic vasculature | 6.52e-12 | 2 |
smooth muscle cell of the subclavian artery | 3.30e-10 | 5 |
muscle cell | 1.04e-09 | 55 |
muscle precursor cell | 4.22e-09 | 58 |
myoblast | 4.22e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.22e-09 | 58 |
electrically responsive cell | 1.48e-08 | 61 |
electrically active cell | 1.48e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.43e-17 | 3 |
leiomyoma | 1.43e-17 | 3 |
benign neoplasm | 2.61e-13 | 4 |
ovarian cancer | 7.58e-10 | 14 |
female reproductive organ cancer | 6.38e-07 | 27 |