FFCP PHASE1:Hg19::chr1:186277344..186277358,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:186277344..186277358,+ | |||
|coexpression_cluster_id=C287 | |||
|description=CAGE_peak_at_chr1:186277344..186277358,+ | |description=CAGE_peak_at_chr1:186277344..186277358,+ | ||
|id=chr1:186277344..186277358,+ | |id=chr1:186277344..186277358,+ | ||
|ontology_enrichment_celltype=CL:0002570!6.07e-10!8;CL:0000153!1.16e-09!9;CL:0000447!1.16e-09!9;CL:0000136!4.84e-08!15;CL:0000667!5.08e-07!6;CL:0000058!5.08e-07!6;CL:0000138!5.08e-07!6 | |ontology_enrichment_celltype=CL:0002570!6.07e-10!8;CL:0000153!1.16e-09!9;CL:0000447!1.16e-09!9;CL:0000136!4.84e-08!15;CL:0000667!5.08e-07!6;CL:0000058!5.08e-07!6;CL:0000138!5.08e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000153;2.71e-24;9!CL:0000447;2.71e-24;9!CL:0000138;6.97e-17;6!CL:0000327;2.34e-14;15!CL:0000499;7.64e-13;28!CL:0000214;4.08e-09;3!CL:0000135;5.97e-09;3!CL:0000388;5.97e-09;3!CL:0002582;1.75e-08;3!CL:0002570;3.17e-07;8!CL:0000569;8.34e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.71e-24,9;CL:0000447,2.71e-24,9;CL:0000058,6.97e-17,6;CL:0000138,6.97e-17,6;CL:0000327,2.34e-14,15;CL:0000499,7.46e-13,28;CL:0000214,4.08e-09,3;CL:0000135,5.62e-09,3;CL:0000388,5.62e-09,3;CL:0002582,1.89e-08,3;CL:0002570,3.60e-07,8;CL:0000569,8.59e-07,4;CL:0000011,8.59e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0010227;3.73e-07;1!UBERON:0010115;5.67e-07;1!CL:0000011;8.34e-07;4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001013!5.67e-12!14;UBERON:0007023!6.64e-07!115 | |ontology_enrichment_uberon=UBERON:0001013!5.67e-12!14;UBERON:0007023!6.64e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.44e-10;14!UBERON:0006915;4.08e-09;3!UBERON:0007616;4.08e-09;3!UBERON:0002217;4.08e-09;3!UBERON:0002018;4.08e-09;3!UBERON:0007846;5.97e-09;3!UBERON:0000043;5.97e-09;3!UBERON:0007845;5.97e-09;3!UBERON:0002107;6.36e-08;19!UBERON:0006925;6.36e-08;19!UBERON:0002079;3.73e-07;1!UBERON:0002363;5.67e-07;1!UBERON:0002171;5.67e-07;1!UBERON:0006518;5.67e-07;1!UBERON:0008949;5.67e-07;1!UBERON:0000101;5.67e-07;1!UBERON:0002167;5.67e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,1.64e-10,14;UBERON:0006915,4.08e-09,3;UBERON:0007616,4.08e-09,3;UBERON:0002217,4.08e-09,3;UBERON:0002018,4.08e-09,3;UBERON:0007846,5.62e-09,3;UBERON:0000043,5.62e-09,3;UBERON:0007845,5.62e-09,3;UBERON:0002107,6.18e-08,19;UBERON:0006925,6.18e-08,19;UBERON:0008836,6.18e-08,19;UBERON:0002079,3.85e-07,1;UBERON:0002363,4.34e-07,1;UBERON:0007645,4.34e-07,1;UBERON:0007647,4.34e-07,1;UBERON:0010115,4.34e-07,1;UBERON:0002171,4.89e-07,1;UBERON:0006518,4.89e-07,1;UBERON:0008949,4.89e-07,1;UBERON:0000101,4.89e-07,1;UBERON:0002167,4.89e-07,1;UBERON:0008835,8.18e-07,22;UBERON:0003894,8.18e-07,22 | |||
|phase1_expression=0.363356758541113,1.07050261945492,0.140954404095971,0,0,0,0,14.5295570888171,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0.25618263945135,1.1705341280389,0.164437904603676,0,0,0,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69870898099936,0,19.9888196165937,12.7245751528176,31.1446316993687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.1404027857465,13.7595810334868,12.9973779469909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.579125226670317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49076596687656,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0.195801157462741,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0.355123450626254,1.14978018419333,0,1.04589340613963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88514832613622,0,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.33322905892992,8.23237232399755,0,0,0,0,0,2.63602642174982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66270448179735,0,0,0,0,0,0,0,0,0,0,0,4.18420775327246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,1.76922422959766,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0.219267951258557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0,1.28767814440971,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1440859791201,0,0,0,0,0,0,0,0,0,9.52589518907536,3.97520666736664,0,0,0,0,0.320362237703084,0,1.24271716604159,0,0,0,0,0,0.2506898940227,0,0.327872630709804,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,7.16423053856995,0.701139929541673,6.10286447652875,0.378806010550178,0.50313580350515,3.55924488638614,0.457680136793847,1.05861646634267,7.9272972297218,0,0,0,0,2.07353103920428,0,0,0,0.380805212168795,0,0,0,0,0,0,0,1.01024846629776,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.762764190934334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0.175871244359621,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0.647428837187895,0.410651227424988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,6.93263442947127,3.8936390591141,0,0,0,0,0,0,0,0.378893491091197,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0.12729431655633,0,0,0,0,0.215166616178029,0,0,0,0,0,0,0,0,0,0.805095174364105,0 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|phase1_expression=0.363356758541113,1.07050261945492,0.140954404095971,0,0,0,0,14.5295570888171,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0.25618263945135,1.1705341280389,0.164437904603676,0,0,0,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69870898099936,0,19.9888196165937,12.7245751528176,31.1446316993687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.1404027857465,13.7595810334868,12.9973779469909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.579125226670317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49076596687656,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0.195801157462741,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0.355123450626254,1.14978018419333,0,1.04589340613963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88514832613622,0,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.33322905892992,8.23237232399755,0,0,0,0,0,2.63602642174982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66270448179735,0,0,0,0,0,0,0,0,0,0,0,4.18420775327246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,1.76922422959766,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0.219267951258557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0,1.28767814440971,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1440859791201,0,0,0,0,0,0,0,0,0,9.52589518907536,3.97520666736664,0,0,0,0,0.320362237703084,0,1.24271716604159,0,0,0,0,0,0.2506898940227,0,0.327872630709804,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,7.16423053856995,0.701139929541673,6.10286447652875,0.378806010550178,0.50313580350515,3.55924488638614,0.457680136793847,1.05861646634267,7.9272972297218,0,0,0,0,2.07353103920428,0,0,0,0.380805212168795,0,0,0,0,0,0,0,1.01024846629776,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.762764190934334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0.175871244359621,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0.647428837187895,0.410651227424988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,6.93263442947127,3.8936390591141,0,0,0,0,0,0,0,0.378893491091197,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0.12729431655633,0,0,0,0,0.215166616178029,0,0,0,0,0,0,0,0,0,0.805095174364105,0 | ||
|short_description=p@chr1:186277344..186277358,+ | |short_description=p@chr1:186277344..186277358,+ | ||
}} | }} |
Latest revision as of 01:30, 28 July 2015
Short description: | p@chr1:186277344..186277358, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:186277344..186277358, + |
Coexpression cluster: | C287_Hepatocyte_Chondrocyte_Adipocyte_Synoviocyte_liver_tenocyte_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.71e-24 | 9 |
carbohydrate secreting cell | 2.71e-24 | 9 |
chondroblast | 6.97e-17 | 6 |
chondrocyte | 6.97e-17 | 6 |
extracellular matrix secreting cell | 2.34e-14 | 15 |
stromal cell | 7.46e-13 | 28 |
synovial cell | 4.08e-09 | 3 |
fibrocyte | 5.62e-09 | 3 |
tendon cell | 5.62e-09 | 3 |
visceral preadipocyte | 1.89e-08 | 3 |
mesenchymal stem cell of adipose | 3.60e-07 | 8 |
cardiac mesenchymal cell | 8.59e-07 | 4 |
migratory trunk neural crest cell | 8.59e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 1.64e-10 | 14 |
stratified squamous epithelium | 4.08e-09 | 3 |
layer of synovial tissue | 4.08e-09 | 3 |
synovial joint | 4.08e-09 | 3 |
synovial membrane of synovial joint | 4.08e-09 | 3 |
dense regular connective tissue | 5.62e-09 | 3 |
tendon | 5.62e-09 | 3 |
regular connective tissue | 5.62e-09 | 3 |
liver | 6.18e-08 | 19 |
digestive gland | 6.18e-08 | 19 |
liver bud | 6.18e-08 | 19 |
left cardiac atrium | 3.85e-07 | 1 |
dura mater | 4.34e-07 | 1 |
future meninx | 4.34e-07 | 1 |
ectomeninx | 4.34e-07 | 1 |
future dura mater | 4.34e-07 | 1 |
lower lobe of right lung | 4.89e-07 | 1 |
right lung lobe | 4.89e-07 | 1 |
lower lobe of lung | 4.89e-07 | 1 |
lobe of lung | 4.89e-07 | 1 |
right lung | 4.89e-07 | 1 |
hepatic diverticulum | 8.18e-07 | 22 |
liver primordium | 8.18e-07 | 22 |