FFCP PHASE1:Hg19::chr1:198488823..198488834,-: Difference between revisions
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|id=chr1:198488823..198488834,-
|short_description=p@chr1:198488823..198488834,-
|description=CAGE_peak_at_chr1:198488823..198488834,-
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:198488823..198488834,- | |||
|coexpression_cluster_id=C580 | |||
|description=CAGE_peak_at_chr1:198488823..198488834,- | |||
|id=chr1:198488823..198488834,- | |||
|ontology_enrichment_celltype=CL:0000838!1.72e-08!52;CL:0000542!2.68e-08!53;CL:0000051!2.68e-08!53;CL:0000623!4.72e-08!3;CL:0000825!4.72e-08!3 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3371!9.48e-07!1;DOID:4549!9.48e-07!1;DOID:5861!9.48e-07!1;DOID:6496!9.48e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!3.06e-23!20;UBERON:0002619!4.62e-21!22;UBERON:0000956!2.01e-18!25;UBERON:0000203!2.01e-18!25;UBERON:0001869!4.05e-17!32;UBERON:0002791!1.49e-16!33;UBERON:0002020!5.08e-16!34;UBERON:0003528!5.08e-16!34;UBERON:0001893!5.08e-16!34;UBERON:0002370!5.00e-13!4;UBERON:0005058!5.00e-13!4;UBERON:0009113!5.00e-13!4;UBERON:0003295!5.00e-13!4;UBERON:0005562!5.00e-13!4;UBERON:0002780!5.31e-13!41;UBERON:0001890!5.31e-13!41;UBERON:0006240!5.31e-13!41;UBERON:0003080!1.19e-12!42;UBERON:0004177!1.56e-12!7;UBERON:0007023!2.48e-12!115;UBERON:0002021!1.79e-10!5;UBERON:0000153!2.28e-10!129;UBERON:0007811!2.28e-10!129;UBERON:0003056!9.62e-10!61;UBERON:0000974!6.05e-09!10;UBERON:0001049!7.57e-09!57;UBERON:0005068!7.57e-09!57;UBERON:0006241!7.57e-09!57;UBERON:0007135!7.57e-09!57;UBERON:0003351!7.76e-09!6;UBERON:0001042!8.77e-09!10;UBERON:0009145!8.77e-09!10;UBERON:0000200!1.70e-08!6;UBERON:0002616!1.74e-08!59;UBERON:0000955!2.76e-08!69;UBERON:0006238!2.76e-08!69;UBERON:0002771!4.25e-08!3;UBERON:0006562!5.44e-08!11;UBERON:0005743!2.05e-07!86;UBERON:0003112!6.08e-07!1;UBERON:0000032!6.08e-07!1;UBERON:0005253!6.08e-07!1;UBERON:0003128!6.08e-07!1;UBERON:0002241!6.08e-07!1;UBERON:0001703!6.08e-07!1;UBERON:0004761!6.08e-07!1;UBERON:0009617!6.08e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.86e-79;2!UBERON:0005058;2.86e-79;2!UBERON:0009113;2.86e-79;2!UBERON:0004177;1.57e-32;5!UBERON:0005057;1.57e-32;5!UBERON:0002021;3.22e-09;5!UBERON:0000077;6.92e-07;27!UBERON:0002405;6.92e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.81e-40,4;UBERON:0005058,1.81e-40,4;UBERON:0009113,1.81e-40,4;UBERON:0003295,1.81e-40,4;UBERON:0005562,1.81e-40,4;UBERON:0003351,2.08e-27,6;UBERON:0004177,1.14e-23,7;UBERON:0005057,1.14e-23,7;UBERON:0000974,6.39e-17,10;UBERON:0003408,6.39e-17,10;UBERON:0001042,6.39e-17,10;UBERON:0009145,6.39e-17,10;UBERON:0006562,1.74e-15,11;UBERON:0009722,1.74e-15,11;UBERON:0007690,1.74e-15,11;UBERON:0008814,7.10e-10,18;UBERON:0001557,2.08e-09,19;UBERON:0002021,3.22e-09,5 | |||
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|short_description=p@chr1:198488823..198488834,- | |||
}} | }} |
Latest revision as of 01:54, 28 July 2015
Short description: | p@chr1:198488823..198488834, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:198488823..198488834, - |
Coexpression cluster: | C580_chronic_thymus_Hodgkin_acute_iPS_vein_Burkitt |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 1.81e-40 | 4 |
hemolymphoid system gland | 1.81e-40 | 4 |
thymic region | 1.81e-40 | 4 |
pharyngeal gland | 1.81e-40 | 4 |
thymus primordium | 1.81e-40 | 4 |
pharyngeal epithelium | 2.08e-27 | 6 |
hemopoietic organ | 1.14e-23 | 7 |
immune organ | 1.14e-23 | 7 |
neck | 6.39e-17 | 10 |
gland of gut | 6.39e-17 | 10 |
chordate pharynx | 6.39e-17 | 10 |
pharyngeal region of foregut | 6.39e-17 | 10 |
pharynx | 1.74e-15 | 11 |
entire pharyngeal arch endoderm | 1.74e-15 | 11 |
early pharyngeal endoderm | 1.74e-15 | 11 |
pharyngeal arch system | 7.10e-10 | 18 |
upper respiratory tract | 2.08e-09 | 19 |
occipital lobe | 3.22e-09 | 5 |