FFCP PHASE1:Hg19::chr1:200270929..200270934,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:200270929..200270934,- to FFCP PHASE1:Hg19::chr1:200270929..200270934,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:200270929..200270934,- | |||
|coexpression_cluster_id=C513 | |||
|description=CAGE_peak_at_chr1:200270929..200270934,- | |||
|id=chr1:200270929..200270934,- | |||
|ontology_enrichment_celltype=CL:0000066!1.91e-13!254;CL:0000220!9.75e-12!246;CL:0002321!1.02e-11!248;CL:0000012!1.17e-11!682;CL:0000548!7.01e-11!679;CL:0000004!7.01e-11!679;CL:0000255!7.01e-11!679;CL:0000223!6.63e-09!59;CL:0002076!2.58e-08!43;CL:0000003!1.28e-07!722;CL:0002368!3.18e-07!13;CL:0002202!9.95e-07!9;CL:0002632!9.95e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002202;9.39e-13;9!CL:0002632;9.39e-13;9!CL:0002368;1.48e-11;13!CL:0000307;8.38e-11;3!CL:0000083;1.03e-07;4!CL:0002076;1.42e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,6.50e-13,9;CL:0002632,6.50e-13,9;CL:0002368,1.12e-11,13;CL:0000068,7.04e-11,3;CL:0000069,7.04e-11,3;CL:0000307,7.04e-11,3;CL:0000377,7.04e-11,3;CL:0000223,2.08e-10,58;CL:0000066,2.34e-10,253;CL:0002076,3.03e-10,42;CL:0000083,1.53e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000377;8.38e-11;3 | |||
|ontology_enrichment_disease=DOID:14566!8.64e-15!239;DOID:162!1.51e-14!235;DOID:0050687!5.47e-13!143;DOID:305!1.19e-12!106;DOID:1749!1.37e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.92e-14;14!DOID:1793;1.03e-07;4!DOID:4074;1.56e-07;2!DOID:4905;1.56e-07;2!DOID:3498;1.56e-07;2!DOID:4929;1.83e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.09e-14,14;DOID:0050687,1.60e-12,143;DOID:305,1.85e-11,106;DOID:1793,1.53e-07,4;DOID:14566,1.59e-07,239;DOID:4074,1.78e-07,2;DOID:4905,1.78e-07,2;DOID:3498,1.78e-07,2;DOID:4929,2.78e-07,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;9.92e-10;15!UBERON:0001558;9.92e-10;15!UBERON:0003343;4.51e-08;4!UBERON:0004785;4.51e-08;4!UBERON:0003126;1.18e-07;7!UBERON:0001005;1.18e-07;7!UBERON:0000344;3.99e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007196,7.87e-10,15;UBERON:0001558,7.87e-10,15;UBERON:0003343,5.23e-08,4;UBERON:0004785,5.23e-08,4;UBERON:0003126,1.09e-07,7;UBERON:0001005,1.09e-07,7;UBERON:0000344,4.20e-07,20 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,4.18680700783456,0,0,0.618831764800233,1.65698687863958,0,0,0.730310090387373,0.487932798790507,0.246242116153576,0.612002073732759,0,0,0.273748850145768,0.376627918784408,0,0,0,0,0,0.154816123316076,0.919421224478927,2.409647350226,7.02532619316897,0.0774672005803016,0.426507697462265,0.880801318004542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0.316462387440884,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0.790513071238134,0,0,0.370784442784429,0,0,0,0.715471872916026,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0,0,0.234321431833797,0.624320153660641,0,0,0.352303495931295,0,0.140450806702248,0,0,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0.438977620880838,0.30648779579902,0,0.226864366320042,0.358779271377724,0,0.211931901159562,0.600182192168805,0.412210116953756,0,0,0.168776332241266,0,0.252433774244115,0.0920498986422993,0,0,0,0,0.193260853163297,0,0,0.121973706129595,0,0.116193942869518,0.10366105501537,0.756962552626885,0,1.56449532329816,0,2.76269842704961,0.464367928031979,0,0.118306800039844,0,0,0.110293972732394,0.435758888184812,0.237270619111097,0,0,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0,0,0,1.1240175325762,0.301586917234893,2.12953423864618,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0,0.895585227028483,0.581267877027924,0.766765358330422,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0.266422179016099,0,0,0.823240336780769,0,0,1.58390374586686,0,0,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49076596687656,0,0.813795071099207,0.207970861530807,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0.462629081407967,0.177561725313127,0.821271560138091,0,1.16210378459959,0,0.200506470303285,0.184161977871793,0.114814448164607,0.182091168006717,0.131124414959424,0,0,0,1.46139224653261,0.105551628892876,1.13733384070897,0,0.431831832204279,0,0,0.501689773854853,0.254876273045038,0,1.56712328305525,0,0,0.512900250232778,0,0,0,0,0,0,0.650060246036521,0,0.386682873168488,0.616194468458578,0.307007349452259,1.51620229732984,0.214840489736547,0,0.596586391912706,0.0890320356467374,0,0.384380134730212,2.4246415373971,0.2023155617111,0.464845549297286,0.31481234683064,0.6970372701606,0,0,0.869932992075073,0,0.429374660225974,0,0,0.190630193923825,0,0,0.318203247925937,2.35484592059769,0,0.274537029736055,0.353437207037059,0.202182481573316,0,0.421258456238981,0,0,0,0,0.141405431953713,0,0,0.66343897524122,0.438450885253763,0,1.31178950409327,0.202910376962704,0,0,0.430234056612155,0,0,0,0,0,0,0.349934720244983,1.53955380360819,8.04362730642945,30.4894757611703,0,0,1.68471475667626,0.443430153536676,1.1486170010348,0,0,0,0,0,0,0,0,0,0,3.92064345569651,0.185803175125719,0.577076851905779,0.142283686696828,0,0,0,0,0,0,0,0,0,0.50787533340481,0.1605880751037,0.605399121573143,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0.284136146806413,0,0,0,0,0.140669416410513,0,0,1.47787785689595,0,0,0,0.20453736500431,0,0,2.60618218327248,0,0,0,0,0,0,0,0,0,1.74919999992391,0,5.34829206941848,1.77977555204936,0.236387681767936,1.03423011972439,0,0.694499979733169,0.885741385813839,0,0,0,0,0.219385397153973,0,0.139423744278603,0,0.455768223388005,0,0,0,0,0,0,0,0,0.664846727600626,0,0,0.167821586975843,0.189753732724185,2.70192184266644,3.16497096792041,0.489698424477443,0.424059214301822,0,0,0,0,0,0,0,0.067401132980677,0,0,0.729819156862664,2.34797542718508,2.42780379534093,0,0,0,0,0.450970258243478,0.207376382794494,0,0,0,0,0.853828638089378,0,0.173559738335131,0.587954384486266,0.435296032902013,0,0.51595809741485,0,0,0.0821154570532092,0,0,0,1.50746117111426,0.397429223405979,0,0,0.801588202515337,0,0.599428828746391,0.576361668616424,0,0,1.29649318189335,0,0.235694034616795,0.271808412147228,0.209205692624666,0,0.288950589901519,0,0,0,0.859530882839914,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.0674035438541849,0.196854963029498,0,0,0,0.321506296930038,0,0.83088067605837,0,0,0,0,0,0,2.64000841298516,0,0.191915197319445,0,0,0,0,0,0,0,0.82092520749339,0,0,0.146552233678082,0,0,0,0.342173675768659,0,0,0,0,0,0,0.121792598380896,7.66009509324218,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0.138348634936231,3.8743926468253,0,0.285465333544967,0.705797459094515,0,0.144921028610825,0.447764408660622,0.467426619694449,1.66441758450784,0,0.251567901752575,0,0,0.151230923763239,0.466311601748341,0,0,0,0.621051827505038,0,0,0.521745061811734,0.150257608997218,0.761610424337591,1.22061219961398,0.727394636810238,0.214821114084977,0,0,0,0,0.336749488765919,1.26184898228651,0.19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| ||
|short_description=p@chr1:200270929..200270934,- | |||
}} | }} |
Latest revision as of 02:00, 28 July 2015
Short description: | p@chr1:200270929..200270934, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:200270929..200270934, - |
Coexpression cluster: | C513_Tracheal_Bronchial_squamous_bronchial_Small_oral_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 6.50e-13 | 9 |
epithelial cell of lower respiratory tract | 6.50e-13 | 9 |
respiratory epithelial cell | 1.12e-11 | 13 |
duct epithelial cell | 7.04e-11 | 3 |
branched duct epithelial cell | 7.04e-11 | 3 |
tracheal epithelial cell | 7.04e-11 | 3 |
tracheoblast | 7.04e-11 | 3 |
endodermal cell | 2.08e-10 | 58 |
epithelial cell | 2.34e-10 | 253 |
endo-epithelial cell | 3.03e-10 | 42 |
epithelial cell of pancreas | 1.53e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
tracheobronchial tree | 7.87e-10 | 15 |
lower respiratory tract | 7.87e-10 | 15 |
mucosa of oral region | 5.23e-08 | 4 |
respiratory system mucosa | 5.23e-08 | 4 |
trachea | 1.09e-07 | 7 |
respiratory airway | 1.09e-07 | 7 |
mucosa | 4.20e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.09e-14 | 14 |
cell type cancer | 1.60e-12 | 143 |
carcinoma | 1.85e-11 | 106 |
pancreatic cancer | 1.53e-07 | 4 |
disease of cellular proliferation | 1.59e-07 | 239 |
pancreas adenocarcinoma | 1.78e-07 | 2 |
pancreatic carcinoma | 1.78e-07 | 2 |
pancreatic ductal adenocarcinoma | 1.78e-07 | 2 |
tubular adenocarcinoma | 2.78e-07 | 2 |