FFCP PHASE1:Hg19::chr1:205426201..205426247,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:205426201..205426247,- | |||
|coexpression_cluster_id=C535 | |||
|description=CAGE_peak_at_chr1:205426201..205426247,- | |description=CAGE_peak_at_chr1:205426201..205426247,- | ||
|id=chr1:205426201..205426247,- | |id=chr1:205426201..205426247,- | ||
|ontology_enrichment_celltype=CL:0000047!1.23e-19!8;CL:0000540!5.11e-15!6;CL:0000031!5.11e-15!6;CL:0000404!5.11e-15!6;CL:0000133!3.69e-13!59;CL:0002319!8.85e-13!25;CL:0002322!1.18e-12!5;CL:0000221!4.87e-10!71 | |ontology_enrichment_celltype=CL:0000047!1.23e-19!8;CL:0000540!5.11e-15!6;CL:0000031!5.11e-15!6;CL:0000404!5.11e-15!6;CL:0000133!3.69e-13!59;CL:0002319!8.85e-13!25;CL:0002322!1.18e-12!5;CL:0000221!4.87e-10!71 | ||
|ontology_enrichment_celltype_v019=CL:0000540;2.06e-27;6!CL:0000404;2.06e-27;6!CL:0002322;7.70e-23;5!CL:0002319;3.62e-19;25!CL:0002321;7.53e-14;15!CL:0000047;1.19e-10;2!CL:0000039;2.74e-10;7!CL:0000586;2.74e-10;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.84e-36,8;CL:0000540,2.26e-27,6;CL:0000031,2.26e-27,6;CL:0000404,2.26e-27,6;CL:0002322,7.88e-23,5;CL:0002319,3.75e-19,25;CL:0000133,7.10e-16,59;CL:0000221,1.87e-12,72;CL:0000039,2.71e-10,7;CL:0000586,2.71e-10,7 | |||
|ontology_enrichment_development_v019=CL:0000031;2.06e-27;6!UBERON:0006215;3.20e-14;3!CL:0000133;1.44e-08;59!UBERON:0009117;3.14e-07;10!UBERON:0005564;3.14e-07;10 | |||
|ontology_enrichment_disease=DOID:1325!3.04e-08!7;DOID:3904!3.04e-08!7;DOID:3095!5.93e-07!22;DOID:2994!5.93e-07!22 | |ontology_enrichment_disease=DOID:1325!3.04e-08!7;DOID:3904!3.04e-08!7;DOID:3095!5.93e-07!22;DOID:2994!5.93e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;7.73e-09;22!DOID:2994;7.73e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,7.63e-09,22;DOID:2994,7.63e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.94e-23!94;UBERON:0001016!2.94e-23!94;UBERON:0005743!6.83e-22!86;UBERON:0001017!8.68e-22!82;UBERON:0000924!8.89e-14!173;UBERON:0006601!8.89e-14!173;UBERON:0004121!1.82e-13!169;UBERON:0001049!3.20e-13!57;UBERON:0005068!3.20e-13!57;UBERON:0006241!3.20e-13!57;UBERON:0007135!3.20e-13!57;UBERON:0000955!1.85e-12!69;UBERON:0006238!1.85e-12!69;UBERON:0002346!6.25e-12!90;UBERON:0003075!1.06e-11!86;UBERON:0007284!1.06e-11!86;UBERON:0002616!2.71e-11!59;UBERON:0004733!3.31e-11!12;UBERON:0002028!3.31e-11!12;UBERON:0007277!3.31e-11!12;UBERON:0003076!6.50e-11!15;UBERON:0003057!6.50e-11!15;UBERON:0004732!3.14e-10!13;UBERON:0000473!5.86e-10!8;UBERON:0003135!1.93e-09!11;UBERON:0002680!6.56e-09!9;UBERON:0001895!6.56e-09!9;UBERON:0010092!6.56e-09!9;UBERON:0000033!1.17e-07!123;UBERON:0000988!2.78e-07!3;UBERON:0003056!2.81e-07!61;UBERON:0000153!5.32e-07!129;UBERON:0007811!5.32e-07!129;UBERON:0002298!8.37e-07!8 | |ontology_enrichment_uberon=UBERON:0000073!2.94e-23!94;UBERON:0001016!2.94e-23!94;UBERON:0005743!6.83e-22!86;UBERON:0001017!8.68e-22!82;UBERON:0000924!8.89e-14!173;UBERON:0006601!8.89e-14!173;UBERON:0004121!1.82e-13!169;UBERON:0001049!3.20e-13!57;UBERON:0005068!3.20e-13!57;UBERON:0006241!3.20e-13!57;UBERON:0007135!3.20e-13!57;UBERON:0000955!1.85e-12!69;UBERON:0006238!1.85e-12!69;UBERON:0002346!6.25e-12!90;UBERON:0003075!1.06e-11!86;UBERON:0007284!1.06e-11!86;UBERON:0002616!2.71e-11!59;UBERON:0004733!3.31e-11!12;UBERON:0002028!3.31e-11!12;UBERON:0007277!3.31e-11!12;UBERON:0003076!6.50e-11!15;UBERON:0003057!6.50e-11!15;UBERON:0004732!3.14e-10!13;UBERON:0000473!5.86e-10!8;UBERON:0003135!1.93e-09!11;UBERON:0002680!6.56e-09!9;UBERON:0001895!6.56e-09!9;UBERON:0010092!6.56e-09!9;UBERON:0000033!1.17e-07!123;UBERON:0000988!2.78e-07!3;UBERON:0003056!2.81e-07!61;UBERON:0000153!5.32e-07!129;UBERON:0007811!5.32e-07!129;UBERON:0002298!8.37e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;4.44e-11;49!UBERON:0001905;5.54e-11;2!UBERON:0002757;5.54e-11;2!UBERON:0010134;5.54e-11;2!UBERON:0005408;5.54e-11;2!UBERON:0001899;5.54e-11;2!UBERON:0000473;5.13e-09;8!UBERON:0002680;4.12e-08;9!UBERON:0001895;4.12e-08;9!UBERON:0001016;1.54e-07;83!UBERON:0002037;2.43e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.35e-21,89;UBERON:0001017,5.86e-20,81;UBERON:0001905,5.54e-11,2;UBERON:0002757,5.54e-11,2;UBERON:0010134,5.54e-11,2;UBERON:0005408,5.54e-11,2;UBERON:0001899,5.54e-11,2;UBERON:0004121,7.07e-10,171;UBERON:0000924,7.07e-10,171;UBERON:0006601,7.07e-10,171;UBERON:0000473,5.08e-09,8;UBERON:0011216,9.03e-09,223;UBERON:0000955,1.43e-08,68;UBERON:0006238,1.43e-08,68;UBERON:0002680,3.96e-08,9;UBERON:0001895,3.96e-08,9;UBERON:0010092,3.96e-08,9;UBERON:0002037,2.43e-07,6;UBERON:0006215,2.43e-07,6;UBERON:0000073,9.54e-07,53;UBERON:0002616,9.54e-07,53 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78118489001746,8.74696470921803,4.99633954338929,4.04278114559945,4.03713361401005,10.9493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.7374882049029,5.20559415430487,6.95959931499926,3.18280904135263,7.65526501983796,0,0,0,0,0,0,0,0,0,0,0,0,2.0694614258501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.98841394003583,0,0,0,0,0.254253650292766,0.472775363535873,6.20538071834636,0,0,0,0.241192877250816,3.05163472634166,3.20679853800551,5.91095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,1.1713222286267,0,0.19566461893209,0,0,0,8.26396456402323,0,0,0,0,0,0,0,0,0,2.95051555169723,0,0,0.698906672968121,0,0,0,0,0,0,0.451961481561065,0,0,0,0.195551382734803,0,0,0,0.288180834308212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.14410075088061,5.08895915409765,4.56984371832104,0,0,0.0607495566580247,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.13223260174269,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0.332787154610557,0.745156835296601,45.2400036241475,0,0,0,0,0,17.390523433299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0.622077260032973,1.27894371303652,0.107824811396682,2.67352101155024,0,0,0.425149840203366,0,0,0,0,0,0,0,0,0,0,0,8.82250936776013,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0.887136517302272,0.0675375846183947,0,0,0,16.4092442705466,0,0,0,0,13.3925458969572,34.9735071107577,0,0,0,0,0,1.90315252335129,0.0657727735628491,0,0.111231401892069,0.078493092850514,0.157115589916002,0,0,0,0,0.78624198594322,36.1851170867944,12.4378325143894,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0,0,0,0,0,0.233939463462106,4.17796627838873,0,0,12.0934568419972,4.52888530700021,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,10.0360658778287,0,0,0,0,0,1.52971800749174,0,2.65170957329153,2.40495664739004,4.96232457488162,2.50707539292375,0.151557396436479,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87227517805241,0,0,0,0,0.122241444182866,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78118489001746,8.74696470921803,4.99633954338929,4.04278114559945,4.03713361401005,10.9493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.7374882049029,5.20559415430487,6.95959931499926,3.18280904135263,7.65526501983796,0,0,0,0,0,0,0,0,0,0,0,0,2.0694614258501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.98841394003583,0,0,0,0,0.254253650292766,0.472775363535873,6.20538071834636,0,0,0,0.241192877250816,3.05163472634166,3.20679853800551,5.91095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,1.1713222286267,0,0.19566461893209,0,0,0,8.26396456402323,0,0,0,0,0,0,0,0,0,2.95051555169723,0,0,0.698906672968121,0,0,0,0,0,0,0.451961481561065,0,0,0,0.195551382734803,0,0,0,0.288180834308212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.14410075088061,5.08895915409765,4.56984371832104,0,0,0.0607495566580247,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.13223260174269,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0.332787154610557,0.745156835296601,45.2400036241475,0,0,0,0,0,17.390523433299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0.622077260032973,1.27894371303652,0.107824811396682,2.67352101155024,0,0,0.425149840203366,0,0,0,0,0,0,0,0,0,0,0,8.82250936776013,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0.887136517302272,0.0675375846183947,0,0,0,16.4092442705466,0,0,0,0,13.3925458969572,34.9735071107577,0,0,0,0,0,1.90315252335129,0.0657727735628491,0,0.111231401892069,0.078493092850514,0.157115589916002,0,0,0,0,0.78624198594322,36.1851170867944,12.4378325143894,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0,0,0,0,0,0.233939463462106,4.17796627838873,0,0,12.0934568419972,4.52888530700021,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,10.0360658778287,0,0,0,0,0,1.52971800749174,0,2.65170957329153,2.40495664739004,4.96232457488162,2.50707539292375,0.151557396436479,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87227517805241,0,0,0,0,0.122241444182866,0.406896178315738,0,0,0 | ||
|short_description=p@chr1:205426201..205426247,- | |short_description=p@chr1:205426201..205426247,- | ||
}} | }} |
Latest revision as of 02:46, 28 July 2015
Short description: | p@chr1:205426201..205426247, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:205426201..205426247, - |
Coexpression cluster: | C535_medulloblastoma_small_pineal_retinoblastoma_eye_Retinal_retina |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.84e-36 | 8 |
neuron | 2.26e-27 | 6 |
neuroblast | 2.26e-27 | 6 |
electrically signaling cell | 2.26e-27 | 6 |
embryonic stem cell | 7.88e-23 | 5 |
neural cell | 3.75e-19 | 25 |
neurectodermal cell | 7.10e-16 | 59 |
ectodermal cell | 1.87e-12 | 72 |
germ line cell | 2.71e-10 | 7 |
germ cell | 2.71e-10 | 7 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.35e-21 | 89 |
central nervous system | 5.86e-20 | 81 |
pineal body | 5.54e-11 | 2 |
regional part of epithalamus | 5.54e-11 | 2 |
secretory circumventricular organ | 5.54e-11 | 2 |
circumventricular organ | 5.54e-11 | 2 |
epithalamus | 5.54e-11 | 2 |
ectoderm-derived structure | 7.07e-10 | 171 |
ectoderm | 7.07e-10 | 171 |
presumptive ectoderm | 7.07e-10 | 171 |
testis | 5.08e-09 | 8 |
organ system subdivision | 9.03e-09 | 223 |
brain | 1.43e-08 | 68 |
future brain | 1.43e-08 | 68 |
regional part of metencephalon | 3.96e-08 | 9 |
metencephalon | 3.96e-08 | 9 |
future metencephalon | 3.96e-08 | 9 |
cerebellum | 2.43e-07 | 6 |
rhombic lip | 2.43e-07 | 6 |
regional part of nervous system | 9.54e-07 | 53 |
regional part of brain | 9.54e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.63e-09 | 22 |
germ cell cancer | 7.63e-09 | 22 |