FFCP PHASE1:Hg19::chr1:240448610..240448624,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:240448610..240448624,+ | |||
|coexpression_cluster_id=C3954 | |coexpression_cluster_id=C3954 | ||
|description=CAGE_peak_at_chr1:240448610..240448624,+ | |description=CAGE_peak_at_chr1:240448610..240448624,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002620!3.98e-31!23;CL:0000057!3.31e-27!75;CL:0002334!1.48e-17!12;CL:0000055!9.35e-14!180;CL:0002570!1.03e-11!8;CL:0002580!4.30e-10!3;CL:0002573!2.12e-09!2;CL:0000135!5.69e-09!3;CL:0000386!5.69e-09!3;CL:0000388!5.69e-09!3;CL:0000136!2.44e-08!15;CL:0000134!9.08e-08!358;CL:0002551!9.23e-08!6;CL:0000219!1.01e-07!390;CL:0002320!2.15e-07!365;CL:0002617!3.98e-07!2;CL:0000515!6.47e-07!4 | |ontology_enrichment_celltype=CL:0002620!3.98e-31!23;CL:0000057!3.31e-27!75;CL:0002334!1.48e-17!12;CL:0000055!9.35e-14!180;CL:0002570!1.03e-11!8;CL:0002580!4.30e-10!3;CL:0002573!2.12e-09!2;CL:0000135!5.69e-09!3;CL:0000386!5.69e-09!3;CL:0000388!5.69e-09!3;CL:0000136!2.44e-08!15;CL:0000134!9.08e-08!358;CL:0002551!9.23e-08!6;CL:0000219!1.01e-07!390;CL:0002320!2.15e-07!365;CL:0002617!3.98e-07!2;CL:0000515!6.47e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.20e-35;23!CL:0002580;2.31e-23;3!CL:0002617;1.04e-15;2!CL:0002551;2.00e-11;6!CL:0002573;5.58e-11;2!CL:0002334;3.35e-10;12!CL:0000057;4.62e-10;73 | |ontology_enrichment_celltype_v019=CL:0002620;2.20e-35;23!CL:0002580;2.31e-23;3!CL:0002617;1.04e-15;2!CL:0002551;2.00e-11;6!CL:0002573;5.58e-11;2!CL:0002334;3.35e-10;12!CL:0000057;4.62e-10;73 | ||
|ontology_enrichment_celltype_v019_2=CL:0002620,1.33e-35,23;CL:0002580,2.32e-23,3;CL:0000057,3.49e-21,76;CL:0002617,8.66e-16,2;CL:0002551,1.74e-11,6;CL:0002573,5.59e-11,2;CL:0002334,3.56e-10,12;CL:0000219,5.16e-08,386;CL:0000136,8.00e-08,15;CL:0000134,2.75e-07,354;CL:0002320,4.65e-07,361 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:17!1.07e-09!5;DOID:450!1.07e-09!5;DOID:66!1.07e-09!5;DOID:423!1.07e-09!5;DOID:0080000!1.07e-09!5;DOID:11722!1.07e-09!5 | |ontology_enrichment_disease=DOID:17!1.07e-09!5;DOID:450!1.07e-09!5;DOID:66!1.07e-09!5;DOID:423!1.07e-09!5;DOID:0080000!1.07e-09!5;DOID:11722!1.07e-09!5 | ||
|ontology_enrichment_disease_v019=DOID:17;8.95e-23;5!DOID:450;8.95e-23;5!DOID:66;8.95e-23;5!DOID:423;8.95e-23;5!DOID:0080000;8.95e-23;5!DOID:11722;8.95e-23;5!DOID:4235;2.55e-08;1 | |ontology_enrichment_disease_v019=DOID:17;8.95e-23;5!DOID:450;8.95e-23;5!DOID:66;8.95e-23;5!DOID:423;8.95e-23;5!DOID:0080000;8.95e-23;5!DOID:11722;8.95e-23;5!DOID:4235;2.55e-08;1 | ||
|ontology_enrichment_disease_v019_2=DOID:17,6.02e-23,5;DOID:450,6.02e-23,5;DOID:66,6.02e-23,5;DOID:423,6.02e-23,5;DOID:0080000,6.02e-23,5;DOID:11722,6.02e-23,5;DOID:4235,3.28e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0002199!2.32e-19!45;UBERON:0002416!2.32e-19!45;UBERON:0002097!6.47e-16!40;UBERON:0001013!6.24e-11!14;UBERON:0000043!5.69e-09!3;UBERON:0003102!3.61e-08!95;UBERON:0002384!6.09e-08!375;UBERON:0003688!1.03e-07!6;UBERON:0002358!1.03e-07!6;UBERON:0003684!1.03e-07!6;UBERON:0001178!1.03e-07!6;UBERON:0000310!1.67e-07!10;UBERON:0001443!8.99e-07!11 | |ontology_enrichment_uberon=UBERON:0002199!2.32e-19!45;UBERON:0002416!2.32e-19!45;UBERON:0002097!6.47e-16!40;UBERON:0001013!6.24e-11!14;UBERON:0000043!5.69e-09!3;UBERON:0003102!3.61e-08!95;UBERON:0002384!6.09e-08!375;UBERON:0003688!1.03e-07!6;UBERON:0002358!1.03e-07!6;UBERON:0003684!1.03e-07!6;UBERON:0001178!1.03e-07!6;UBERON:0000310!1.67e-07!10;UBERON:0001443!8.99e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0000310;1.40e-18;10!UBERON:0001443;7.07e-17;11!UBERON:0002097;3.40e-16;41!UBERON:0002199;1.68e-13;46!UBERON:0002416;1.68e-13;46!UBERON:0003102;1.00e-09;50!UBERON:0002067;8.93e-08;9 | |ontology_enrichment_uberon_v019=UBERON:0000310;1.40e-18;10!UBERON:0001443;7.07e-17;11!UBERON:0002097;3.40e-16;41!UBERON:0002199;1.68e-13;46!UBERON:0002416;1.68e-13;46!UBERON:0003102;1.00e-09;50!UBERON:0002067;8.93e-08;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.80e-19,41;UBERON:0000310,1.28e-18,10;UBERON:0001443,6.53e-17,11;UBERON:0002199,7.38e-17,46;UBERON:0002416,7.38e-17,46;UBERON:0002067,8.14e-08,9;UBERON:0004016,8.14e-08,9;UBERON:0010083,8.14e-08,9;UBERON:0003102,8.06e-07,99;UBERON:0002384,9.50e-07,371 | |||
|phase1_expression=2.90685406832891,3.42560838225573,0.563817616383885,1.0007329835313,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,2.18512053781224,3.4228309292667,1.94283284717341,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,1.07633781413317,0,2.96704661623387,1.50045548042201,1.95799805553034,0.257640540045629,0.744467425326359,2.19409231913646,1.85130309806277,2.77677151668526,1.28869858099219,0.161646056818812,0,0.705264687593482,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,1.30294473717494,0,0,0,0,0,0,0,0,0,0,0,0.868687840005475,0.410952645100767,3.22309733831812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,1.03473071292505,0,0,0.60818530127658,0,0,0,0,0,0,0,0.30239029332968,6.69891081110698,9.66810431714793,8.70046292742528,0.896974044789907,2.04682899626681,0,0,0.308419387605311,0.355123450626254,0.492762936082855,0,0.348631135379878,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24807205711825,0,0,0,0,0.343972064943233,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0.653174720218818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0.298509605773748,0.233713309847224,0,0,0,0.889811221596536,0,0.151230923763239,0.310874401165561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,1.71697852591396,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49661602776148,4.94237747603115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18948980281472,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0.924351257262837,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=2.90685406832891,3.42560838225573,0.563817616383885,1.0007329835313,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,2.18512053781224,3.4228309292667,1.94283284717341,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,1.07633781413317,0,2.96704661623387,1.50045548042201,1.95799805553034,0.257640540045629,0.744467425326359,2.19409231913646,1.85130309806277,2.77677151668526,1.28869858099219,0.161646056818812,0,0.705264687593482,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,1.30294473717494,0,0,0,0,0,0,0,0,0,0,0,0.868687840005475,0.410952645100767,3.22309733831812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,1.03473071292505,0,0,0.60818530127658,0,0,0,0,0,0,0,0.30239029332968,6.69891081110698,9.66810431714793,8.70046292742528,0.896974044789907,2.04682899626681,0,0,0.308419387605311,0.355123450626254,0.492762936082855,0,0.348631135379878,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24807205711825,0,0,0,0,0.343972064943233,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0.653174720218818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0.298509605773748,0.233713309847224,0,0,0,0.889811221596536,0,0.151230923763239,0.310874401165561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,1.71697852591396,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49661602776148,4.94237747603115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18948980281472,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0.924351257262837,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:240448610..240448624,+ | |short_description=p@chr1:240448610..240448624,+ | ||
}} | }} |
Latest revision as of 05:39, 28 July 2015
Short description: | p@chr1:240448610..240448624, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:240448610..240448624, + |
Coexpression cluster: | C3954_Preadipocyte_schwannoma_Adipocyte_Ewing_Fibroblast_Myoblast_thyroid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.33e-35 | 23 |
preadipocyte of the breast | 2.32e-23 | 3 |
fibroblast | 3.49e-21 | 76 |
adipocyte of breast | 8.66e-16 | 2 |
fibroblast of dermis | 1.74e-11 | 6 |
Schwann cell | 5.59e-11 | 2 |
preadipocyte | 3.56e-10 | 12 |
motile cell | 5.16e-08 | 386 |
fat cell | 8.00e-08 | 15 |
mesenchymal cell | 2.75e-07 | 354 |
connective tissue cell | 4.65e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.80e-19 | 41 |
breast | 1.28e-18 | 10 |
chest | 6.53e-17 | 11 |
integument | 7.38e-17 | 46 |
integumental system | 7.38e-17 | 46 |
dermis | 8.14e-08 | 9 |
dermatome | 8.14e-08 | 9 |
future dermis | 8.14e-08 | 9 |
surface structure | 8.06e-07 | 99 |
connective tissue | 9.50e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.02e-23 | 5 |
myotonic disease | 6.02e-23 | 5 |
muscle tissue disease | 6.02e-23 | 5 |
myopathy | 6.02e-23 | 5 |
muscular disease | 6.02e-23 | 5 |
myotonic dystrophy | 6.02e-23 | 5 |
spindle cell sarcoma | 3.28e-08 | 1 |