FFCP PHASE1:Hg19::chr1:3591362..3591369,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:3591362..3591369,- to FFCP PHASE1:Hg19::chr1:3591362..3591369,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:3591362..3591369,- | |||
|coexpression_cluster_id=C513 | |||
|description=CAGE_peak_at_chr1:3591362..3591369,- | |||
|id=chr1:3591362..3591369,- | |||
|ontology_enrichment_celltype=CL:0002368!9.05e-26!13;CL:0002202!3.40e-19!9;CL:0002632!3.40e-19!9;CL:0000066!3.91e-16!254;CL:0002076!1.18e-14!43;CL:0002328!8.17e-12!3;CL:0000068!1.01e-11!3;CL:0000069!1.01e-11!3;CL:0000307!1.01e-11!3;CL:0000377!1.01e-11!3;CL:0000223!3.96e-11!59;CL:0000575!2.55e-08!2;CL:1000415!2.80e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002328;9.55e-47;3!CL:0002202;5.61e-43;9!CL:0002632;5.61e-43;9!CL:0002368;2.27e-42;13!CL:0000575;5.50e-31;2!CL:0000307;7.68e-22;3!CL:0002159;2.58e-10;14!CL:0002076;7.99e-09;42!CL:0000082;6.24e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002328,1.03e-46,3;CL:0002202,5.86e-43,9;CL:0002632,5.86e-43,9;CL:0002368,2.27e-42,13;CL:0000575,2.97e-31,2;CL:0000068,7.68e-22,3;CL:0000069,7.68e-22,3;CL:0000307,7.68e-22,3;CL:0000377,7.68e-22,3;CL:0002076,4.97e-13,42;CL:0002159,2.31e-10,14;CL:0000223,2.28e-09,58;CL:0000082,6.32e-08,19;CL:0000066,1.35e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000377;7.68e-22;3 | |||
|ontology_enrichment_disease=DOID:305!1.69e-11!106;DOID:1749!4.71e-08!14;DOID:0050687!6.53e-08!143;DOID:3493!1.50e-07!2;DOID:299!3.57e-07!25 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007196!6.42e-12!14;UBERON:0001558!6.42e-12!14;UBERON:0004815!8.17e-12!3;UBERON:0002031!8.17e-12!3;UBERON:0002185!6.01e-09!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;9.55e-47;3!UBERON:0002031;9.55e-47;3!UBERON:0002185;2.20e-28;5!UBERON:0007196;7.14e-26;15!UBERON:0001558;7.14e-26;15!UBERON:0000485;1.72e-20;7!UBERON:0000964;4.87e-16;4!UBERON:0010409;4.87e-16;4!UBERON:0005178;9.14e-12;34!UBERON:0002224;9.14e-12;34!UBERON:0000065;6.29e-11;44!UBERON:0005181;2.43e-10;35!UBERON:0000072;4.07e-10;37!UBERON:0003126;6.40e-10;7!UBERON:0001005;6.40e-10;7!UBERON:0004802;6.24e-08;19!UBERON:0000115;6.24e-08;19!UBERON:0010313;5.76e-07;10!UBERON:0002048;6.42e-07;22!UBERON:0004807;6.42e-07;22!UBERON:0000117;6.42e-07;22!UBERON:0000171;6.42e-07;22!UBERON:0000170;6.42e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.03e-46,3;UBERON:0002031,1.03e-46,3;UBERON:0002185,2.30e-28,5;UBERON:0007196,7.33e-26,15;UBERON:0001558,7.33e-26,15;UBERON:0000964,3.59e-16,4;UBERON:0010409,3.59e-16,4;UBERON:0004348,3.59e-16,4;UBERON:0005427,3.59e-16,4;UBERON:0000485,4.43e-16,9;UBERON:0005178,1.88e-11,34;UBERON:0002224,1.88e-11,34;UBERON:0005181,3.99e-11,35;UBERON:0008947,3.02e-10,38;UBERON:0003258,3.02e-10,38;UBERON:0000065,4.42e-10,54;UBERON:0003126,6.40e-10,7;UBERON:0001005,6.40e-10,7;UBERON:0000072,2.81e-08,47;UBERON:0005157,3.49e-08,47;UBERON:0004802,6.32e-08,19;UBERON:0000115,6.32e-08,19;UBERON:0000915,1.78e-07,52;UBERON:0001004,2.81e-07,74;UBERON:0010313,5.11e-07,10;UBERON:0002342,5.11e-07,10;UBERON:0005062,5.11e-07,10;UBERON:0002048,6.48e-07,22;UBERON:0000117,6.48e-07,22;UBERON:0000171,6.48e-07,22;UBERON:0000170,6.48e-07,22;UBERON:0005597,6.48e-07,22;UBERON:0000118,6.48e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,3.48900583986214,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59710612239464,2.71085326900425,4.43704812200145,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82147644146271,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1240175325762,0.502644862058154,0.740707561268237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0.384380134730212,1.40373983744043,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962221127255121,8.71392958196524,30.4894757611703,0,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0.490080431962063,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0.251932747854276,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0241410345695,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217294743844016,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0.979396848954886,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0.160317640503067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0.643012593860077,0.275078873194468,0.415440338029185,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0,0,0,0,0,0,0,0,0,0,0.887136517302272,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0.118193840883968,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335566295393377,0.98150233615243,0.121917924982269,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0.655678681511872,0,0,0,0,0,0,0,0,0,0,0,2.82315897372553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,3.48900583986214,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59710612239464,2.71085326900425,4.43704812200145,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82147644146271,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1240175325762,0.502644862058154,0.740707561268237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0.384380134730212,1.40373983744043,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962221127255121,8.71392958196524,30.4894757611703,0,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0.490080431962063,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0.251932747854276,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0241410345695,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217294743844016,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0.979396848954886,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0.160317640503067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0.643012593860077,0.275078873194468,0.415440338029185,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0,0,0,0,0,0,0,0,0,0,0.887136517302272,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0.118193840883968,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335566295393377,0.98150233615243,0.121917924982269,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0.655678681511872,0,0,0,0,0,0,0,0,0,0,0,2.82315897372553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:3591362..3591369,- | |||
}} | }} |
Latest revision as of 07:38, 28 July 2015
Short description: | p@chr1:3591362..3591369, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:3591362..3591369, - |
Coexpression cluster: | C513_Tracheal_Bronchial_squamous_bronchial_Small_oral_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 1.03e-46 | 3 |
epithelial cell of tracheobronchial tree | 5.86e-43 | 9 |
epithelial cell of lower respiratory tract | 5.86e-43 | 9 |
respiratory epithelial cell | 2.27e-42 | 13 |
corneal epithelial cell | 2.97e-31 | 2 |
duct epithelial cell | 7.68e-22 | 3 |
branched duct epithelial cell | 7.68e-22 | 3 |
tracheal epithelial cell | 7.68e-22 | 3 |
tracheoblast | 7.68e-22 | 3 |
endo-epithelial cell | 4.97e-13 | 42 |
general ecto-epithelial cell | 2.31e-10 | 14 |
endodermal cell | 2.28e-09 | 58 |
epithelial cell of lung | 6.32e-08 | 19 |
epithelial cell | 1.35e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.03e-46 | 3 |
epithelium of bronchus | 1.03e-46 | 3 |
bronchus | 2.30e-28 | 5 |
tracheobronchial tree | 7.33e-26 | 15 |
lower respiratory tract | 7.33e-26 | 15 |
cornea | 3.59e-16 | 4 |
eye surface | 3.59e-16 | 4 |
optic eminence | 3.59e-16 | 4 |
corneal primordium | 3.59e-16 | 4 |
simple columnar epithelium | 4.43e-16 | 9 |
thoracic cavity element | 1.88e-11 | 34 |
thoracic cavity | 1.88e-11 | 34 |
thoracic segment organ | 3.99e-11 | 35 |
respiratory primordium | 3.02e-10 | 38 |
endoderm of foregut | 3.02e-10 | 38 |
respiratory tract | 4.42e-10 | 54 |
trachea | 6.40e-10 | 7 |
respiratory airway | 6.40e-10 | 7 |
segment of respiratory tract | 2.81e-08 | 47 |
epithelial fold | 3.49e-08 | 47 |
respiratory tract epithelium | 6.32e-08 | 19 |
lung epithelium | 6.32e-08 | 19 |
thoracic segment of trunk | 1.78e-07 | 52 |
respiratory system | 2.81e-07 | 74 |
neural crest-derived structure | 5.11e-07 | 10 |
neural crest | 5.11e-07 | 10 |
neural fold | 5.11e-07 | 10 |
lung | 6.48e-07 | 22 |
respiratory tube | 6.48e-07 | 22 |
respiration organ | 6.48e-07 | 22 |
pair of lungs | 6.48e-07 | 22 |
lung primordium | 6.48e-07 | 22 |
lung bud | 6.48e-07 | 22 |