FFCP PHASE1:Hg19::chr20:20351080..20351098,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:20351080..20351098,+ | |||
|coexpression_cluster_id=C1864 | |||
|description=CAGE_peak_at_chr20:20351080..20351098,+ | |description=CAGE_peak_at_chr20:20351080..20351098,+ | ||
|id=chr20:20351080..20351098,+ | |id=chr20:20351080..20351098,+ | ||
|ontology_enrichment_celltype=CL:0002319!6.90e-10!25;CL:0000242!3.79e-09!2;CL:0000047!5.11e-08!8;CL:0000453!1.28e-07!5;CL:0000990!7.08e-07!8 | |ontology_enrichment_celltype=CL:0002319!6.90e-10!25;CL:0000242!3.79e-09!2;CL:0000047!5.11e-08!8;CL:0000453!1.28e-07!5;CL:0000990!7.08e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000123;1.03e-20;2!CL:0000242;1.03e-20;2!CL:0000453;1.05e-17;5!CL:0002591;1.27e-10;1!CL:0000990;4.32e-10;8!CL:0002319;6.70e-09;25!CL:0000312;7.72e-09;5!CL:0000451;2.39e-08;10!CL:0000240;1.67e-07;6!CL:0000311;1.67e-07;6!CL:0000079;1.67e-07;6!CL:0000237;1.67e-07;6!CL:0000540;2.09e-07;6!CL:0000404;2.09e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.14e-20,2;CL:0000453,1.11e-17,5;CL:0000047,1.94e-11,8;CL:0002591,1.46e-10,1;CL:0000990,4.45e-10,8;CL:0002319,6.93e-09,25;CL:0000312,8.03e-09,5;CL:0000451,2.45e-08,10;CL:0000240,1.73e-07,6;CL:0000311,1.73e-07,6;CL:0000079,1.73e-07,6;CL:0000237,1.73e-07,6;CL:0000036,1.73e-07,6;CL:0000357,1.73e-07,6;CL:0000114,1.73e-07,6;CL:0000540,2.09e-07,6;CL:0000031,2.09e-07,6;CL:0000404,2.09e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000357;1.67e-07;6!CL:0000114;1.67e-07;6!CL:0000031;2.09e-07;6 | |||
|ontology_enrichment_disease=DOID:3119!9.33e-07!14 | |ontology_enrichment_disease=DOID:3119!9.33e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:3119;9.41e-17;14!DOID:4362;9.73e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,7.33e-17,14;DOID:4362,1.05e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.91e-20!82;UBERON:0000073!2.87e-20!94;UBERON:0001016!2.87e-20!94;UBERON:0005743!3.11e-19!86;UBERON:0000955!9.74e-17!69;UBERON:0006238!9.74e-17!69;UBERON:0002780!2.68e-15!41;UBERON:0001890!2.68e-15!41;UBERON:0006240!2.68e-15!41;UBERON:0003080!7.32e-15!42;UBERON:0001049!1.95e-13!57;UBERON:0005068!1.95e-13!57;UBERON:0006241!1.95e-13!57;UBERON:0007135!1.95e-13!57;UBERON:0002616!7.39e-13!59;UBERON:0004121!1.21e-12!169;UBERON:0003056!2.61e-12!61;UBERON:0000924!3.45e-12!173;UBERON:0006601!3.45e-12!173;UBERON:0001893!8.03e-12!34;UBERON:0003075!2.41e-11!86;UBERON:0007284!2.41e-11!86;UBERON:0002346!1.21e-10!90;UBERON:0001869!1.29e-10!32;UBERON:0002791!2.82e-10!33;UBERON:0000153!1.23e-09!129;UBERON:0007811!1.23e-09!129;UBERON:0000033!2.34e-09!123;UBERON:0000369!2.36e-08!4;UBERON:0002435!2.36e-08!4;UBERON:0000204!2.36e-08!4;UBERON:0010082!2.36e-08!4;UBERON:0000007!3.13e-08!2;UBERON:0002020!3.55e-08!34;UBERON:0003528!3.55e-08!34 | |ontology_enrichment_uberon=UBERON:0001017!1.91e-20!82;UBERON:0000073!2.87e-20!94;UBERON:0001016!2.87e-20!94;UBERON:0005743!3.11e-19!86;UBERON:0000955!9.74e-17!69;UBERON:0006238!9.74e-17!69;UBERON:0002780!2.68e-15!41;UBERON:0001890!2.68e-15!41;UBERON:0006240!2.68e-15!41;UBERON:0003080!7.32e-15!42;UBERON:0001049!1.95e-13!57;UBERON:0005068!1.95e-13!57;UBERON:0006241!1.95e-13!57;UBERON:0007135!1.95e-13!57;UBERON:0002616!7.39e-13!59;UBERON:0004121!1.21e-12!169;UBERON:0003056!2.61e-12!61;UBERON:0000924!3.45e-12!173;UBERON:0006601!3.45e-12!173;UBERON:0001893!8.03e-12!34;UBERON:0003075!2.41e-11!86;UBERON:0007284!2.41e-11!86;UBERON:0002346!1.21e-10!90;UBERON:0001869!1.29e-10!32;UBERON:0002791!2.82e-10!33;UBERON:0000153!1.23e-09!129;UBERON:0007811!1.23e-09!129;UBERON:0000033!2.34e-09!123;UBERON:0000369!2.36e-08!4;UBERON:0002435!2.36e-08!4;UBERON:0000204!2.36e-08!4;UBERON:0010082!2.36e-08!4;UBERON:0000007!3.13e-08!2;UBERON:0002020!3.55e-08!34;UBERON:0003528!3.55e-08!34 | ||
|ontology_enrichment_uberon_v019=UBERON:0000002;2.02e-07;6!UBERON:0001560;2.02e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000002,2.16e-07,6;UBERON:0001560,2.16e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28685161800217,0,3.86644406388848,0.837581326671744,3.82763250991898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.56571342704538,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,3.99227596002388,0,0,0,0,0,0,1.72371686620732,1.16641845353302,1.04174996959975,0,0.361789315876224,0,0.221158519862449,0.591095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247127877893006,0.208843899010911,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,4.28987494654911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0.276697269872462,0,0,0,0,4.21501415226193,4.0577888011031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.50748555910899,2.5244319659539,1.30852315404675,0,0,0,0,0,0,0,0,0,0,0.511577485214607,0.323474434190045,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.0642292250964595,0,0,0.205116364240755,1.51243017733031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,1.09394961803644,0,0,0,0,0,0,0.606965604236632,0.227662191351298,0,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10545517115895,2.98426162742052,0,0.11294608203896,0,2.8682940277668,0,0.218559560503957,1.41095188908457,0,0.235676547101626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0,0.267964130156178,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28685161800217,0,3.86644406388848,0.837581326671744,3.82763250991898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.56571342704538,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,3.99227596002388,0,0,0,0,0,0,1.72371686620732,1.16641845353302,1.04174996959975,0,0.361789315876224,0,0.221158519862449,0.591095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247127877893006,0.208843899010911,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,4.28987494654911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0.276697269872462,0,0,0,0,4.21501415226193,4.0577888011031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.50748555910899,2.5244319659539,1.30852315404675,0,0,0,0,0,0,0,0,0,0,0.511577485214607,0.323474434190045,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.0642292250964595,0,0,0.205116364240755,1.51243017733031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,1.09394961803644,0,0,0,0,0,0,0.606965604236632,0.227662191351298,0,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10545517115895,2.98426162742052,0,0.11294608203896,0,2.8682940277668,0,0.218559560503957,1.41095188908457,0,0.235676547101626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0,0.267964130156178,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr20:20351080..20351098,+ | |short_description=p@chr20:20351080..20351098,+ | ||
}} | }} |
Latest revision as of 12:20, 28 July 2015
Short description: | p@chr20:20351080..20351098, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:20351080..20351098, + |
Coexpression cluster: | C1864_argyrophil_merkel_small_gastrointestinal_smallcell_migratory_nonsmall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.14e-20 | 2 |
Langerhans cell | 1.11e-17 | 5 |
neuronal stem cell | 1.94e-11 | 8 |
smooth muscle cell of the pulmonary artery | 1.46e-10 | 1 |
conventional dendritic cell | 4.45e-10 | 8 |
neural cell | 6.93e-09 | 25 |
keratinocyte | 8.03e-09 | 5 |
dendritic cell | 2.45e-08 | 10 |
stratified squamous epithelial cell | 1.73e-07 | 6 |
keratin accumulating cell | 1.73e-07 | 6 |
stratified epithelial cell | 1.73e-07 | 6 |
keratinizing barrier epithelial cell | 1.73e-07 | 6 |
epithelial fate stem cell | 1.73e-07 | 6 |
stratified epithelial stem cell | 1.73e-07 | 6 |
surface ectodermal cell | 1.73e-07 | 6 |
neuron | 2.09e-07 | 6 |
neuroblast | 2.09e-07 | 6 |
electrically signaling cell | 2.09e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
uterine cervix | 2.16e-07 | 6 |
neck of organ | 2.16e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 7.33e-17 | 14 |
cervical cancer | 1.05e-08 | 5 |